Wall clock time and date at job start Tue Mar 31 2020 12:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47057 * 2 1 4 4 N 1.46507 * 109.46948 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00185 * 269.99600 * 4 3 2 6 6 C 1.50691 * 109.47446 * 270.00259 * 5 4 3 7 7 H 1.08003 * 120.00399 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00224 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00187 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99777 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47084 * 89.99956 * 10 8 6 12 12 H 1.48502 * 109.47156 * 209.99782 * 10 8 6 13 13 H 1.48498 * 109.47312 * 330.00020 * 10 8 6 14 14 C 1.34782 * 119.99733 * 90.00314 * 4 3 2 15 15 O 1.21593 * 119.99343 * 180.02562 * 14 4 3 16 16 N 1.34771 * 119.99903 * 359.97438 * 14 4 3 17 17 C 1.40139 * 119.99541 * 184.59684 * 16 14 4 18 18 C 1.38833 * 120.01782 * 324.87915 * 17 16 14 19 19 C 1.38140 * 120.03903 * 180.10235 * 18 17 16 20 20 C 1.38701 * 120.16296 * 359.94330 * 19 18 17 21 21 C 1.38992 * 119.92837 * 359.95597 * 20 19 18 22 22 C 1.38652 * 119.88502 * 0.12774 * 21 20 19 23 23 O 1.36113 * 120.78232 * 180.39238 * 21 20 19 24 24 C 1.43173 * 116.70619 * 342.55966 * 23 21 20 25 25 C 1.53463 * 108.23626 * 46.31925 * 24 23 21 26 26 O 1.36210 * 119.32596 * 179.80778 * 20 19 18 27 27 H 1.09002 * 109.47330 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47281 * 300.00211 * 1 2 3 29 29 H 1.08998 * 109.46823 * 60.00298 * 1 2 3 30 30 H 1.08998 * 109.47281 * 239.99789 * 2 1 3 31 31 H 1.09004 * 109.46728 * 120.00159 * 2 1 3 32 32 H 1.09004 * 109.47273 * 60.00220 * 3 2 1 33 33 H 1.09004 * 109.47481 * 299.99698 * 3 2 1 34 34 H 1.09002 * 109.46646 * 30.00739 * 5 4 3 35 35 H 1.08991 * 109.46836 * 149.99920 * 5 4 3 36 36 H 0.97001 * 119.99536 * 180.02562 * 9 8 6 37 37 H 0.97000 * 120.00361 * 4.58974 * 16 14 4 38 38 H 1.07995 * 119.98404 * 0.11842 * 18 17 16 39 39 H 1.08005 * 119.91834 * 179.97438 * 19 18 17 40 40 H 1.08001 * 119.98786 * 180.16752 * 22 21 20 41 41 H 1.08999 * 109.71026 * 286.63231 * 24 23 21 42 42 H 1.09004 * 109.70914 * 166.00605 * 24 23 21 43 43 H 1.08993 * 109.71072 * 180.57268 * 25 24 23 44 44 H 1.09008 * 109.74253 * 59.97149 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4427 1.2696 6 6 4.4880 2.8634 1.7045 7 1 4.1377 3.6843 1.0963 8 6 5.1649 3.1156 2.8790 9 7 5.3835 4.3556 3.2588 10 14 5.7714 1.6960 3.9306 11 1 7.1452 1.3200 3.5102 12 1 5.7857 2.1076 5.3574 13 1 4.8656 0.5316 3.7605 14 6 4.1794 1.4423 -1.1664 15 8 5.3953 1.4418 -1.1658 16 7 3.5059 1.4417 -2.3338 17 6 4.2038 1.3443 -3.5451 18 6 5.4474 1.9464 -3.6806 19 6 6.1348 1.8525 -4.8751 20 6 5.5863 1.1561 -5.9419 21 6 4.3424 0.5504 -5.8086 22 6 3.6521 0.6465 -4.6100 23 8 3.7914 -0.1439 -6.8415 24 6 4.3384 0.0963 -8.1427 25 6 5.8688 0.0605 -8.0344 26 8 6.2770 1.0776 -7.1132 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.6476 0.9289 2.0291 35 1 5.1894 0.9288 1.1397 36 1 5.8600 4.5329 4.0848 37 1 2.5382 1.5085 -2.3355 38 1 5.8778 2.4884 -2.8515 39 1 7.1019 2.3220 -4.9785 40 1 2.6867 0.1742 -4.5037 41 1 4.0180 1.0745 -8.5013 42 1 4.0004 -0.6774 -8.8321 43 1 6.3110 0.2511 -9.0121 44 1 6.1894 -0.9156 -7.6700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185956151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:56 Heat of formation + Delta-G solvation = -63.992900 kcal Electronic energy + Delta-G solvation = -27045.700893 eV Core-core repulsion = 23157.435749 eV Total energy + Delta-G solvation = -3888.265145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29658 -40.07899 -37.71966 -37.29086 -35.80693 -34.22526 -33.06552 -32.07736 -30.98390 -30.20268 -28.48001 -27.47227 -25.73104 -24.79789 -22.95920 -22.54945 -21.67971 -20.88145 -19.41110 -18.83596 -17.85299 -17.49662 -17.06011 -16.89614 -16.04237 -15.53079 -15.18645 -14.89517 -14.80506 -14.48619 -14.40270 -14.17032 -13.87568 -13.75211 -13.69195 -13.22316 -13.14303 -12.60246 -12.39457 -12.03449 -12.02637 -11.88595 -11.57228 -11.35980 -11.27751 -11.22783 -10.89636 -10.62661 -10.58900 -10.48969 -10.16128 -9.67282 -9.55115 -9.28167 -8.58189 -8.48672 -7.87507 -7.48807 -6.08105 -4.06855 1.32487 1.40749 2.81691 3.00323 3.28509 3.31863 3.36619 3.38951 3.60667 3.96098 4.05853 4.28506 4.40215 4.57414 4.61228 4.67014 5.00526 5.04390 5.13602 5.21039 5.22811 5.25338 5.35597 5.39616 5.46677 5.55111 5.75126 5.79758 5.91293 5.97921 6.05697 6.16319 6.20690 6.37599 6.40800 6.53185 6.63113 6.85104 6.88601 7.04628 7.24146 7.40596 7.47052 7.62231 8.43144 8.47843 8.95026 9.12382 9.52167 11.05274 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003269 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.663464 B = 8564.229237 C = 9829.617556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.111 3.889 4 N -0.602 5.602 5 C 0.231 3.769 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.702 3.298 15 O -0.567 6.567 16 N -0.692 5.692 17 C 0.185 3.815 18 C -0.112 4.112 19 C -0.092 4.092 20 C 0.023 3.977 21 C 0.065 3.935 22 C -0.151 4.151 23 O -0.309 6.309 24 C 0.022 3.978 25 C 0.021 3.979 26 O -0.309 6.309 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.038 0.962 36 H 0.264 0.736 37 H 0.403 0.597 38 H 0.156 0.844 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 -9.843 -20.217 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C -0.013 4.013 4 N -0.335 5.335 5 C 0.111 3.889 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.404 3.596 15 O -0.443 6.443 16 N -0.342 5.342 17 C 0.089 3.911 18 C -0.132 4.132 19 C -0.111 4.111 20 C -0.022 4.022 21 C 0.020 3.980 22 C -0.172 4.172 23 O -0.224 6.224 24 C -0.054 4.054 25 C -0.055 4.055 26 O -0.224 6.224 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.240 0.760 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.415 -9.755 -19.970 23.132 hybrid contribution -0.196 -0.668 0.418 0.812 sum -6.610 -10.423 -19.552 23.121 Atomic orbital electron populations 1.21701 0.95387 1.01579 1.01950 1.22028 0.95791 0.97922 1.02728 1.21502 0.80944 0.95887 1.02965 1.47230 1.05435 1.75260 1.05596 1.19604 0.92203 0.98336 0.78796 1.21347 1.37027 0.91326 1.07076 0.90723 1.24841 0.95241 0.95533 0.97338 1.69899 1.41480 1.18641 1.23551 0.86865 0.80202 0.82930 0.79760 1.19869 1.21120 1.19065 1.15846 0.85465 0.78224 0.80017 1.90890 1.11302 1.56601 1.85468 1.42881 1.10033 1.77888 1.03385 1.17115 0.93325 0.95869 0.84801 1.21313 0.94608 0.99881 0.97421 1.20358 1.00575 1.00390 0.89824 1.18830 0.91136 1.04363 0.87868 1.18390 0.91591 0.98722 0.89274 1.19928 1.02068 1.03654 0.91600 1.86278 1.58812 1.62546 1.14721 1.23583 0.94094 1.03835 0.83873 1.23557 0.95265 0.92181 0.94507 1.86318 1.56652 1.53274 1.26153 0.92793 0.92334 0.92800 0.92184 0.91267 0.89225 0.92067 0.95052 0.94389 0.92568 0.75990 0.82603 0.84560 0.84813 0.90617 0.86372 0.86419 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.15 -1.82 6.26 -26.74 -0.17 -1.99 16 3 C 0.11 1.67 5.21 -4.04 -0.02 1.65 16 4 N -0.60 -12.10 2.46 -180.81 -0.44 -12.55 16 5 C 0.23 5.55 4.23 -5.20 -0.02 5.53 16 6 C -0.53 -14.98 9.94 -34.44 -0.34 -15.33 16 7 H 0.07 2.32 8.06 -52.48 -0.42 1.90 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 9 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 10 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 14 C 0.70 14.42 8.12 -86.92 -0.71 13.71 16 15 O -0.57 -13.84 13.36 5.28 0.07 -13.77 16 16 N -0.69 -11.04 5.22 -14.21 -0.07 -11.11 16 17 C 0.19 2.93 6.30 -83.65 -0.53 2.40 16 18 C -0.11 -1.88 8.69 -39.40 -0.34 -2.22 16 19 C -0.09 -1.37 9.95 -39.45 -0.39 -1.76 16 20 C 0.02 0.33 6.50 -39.13 -0.25 0.07 16 21 C 0.07 0.90 6.49 -39.15 -0.25 0.65 16 22 C -0.15 -2.07 9.88 -39.24 -0.39 -2.46 16 23 O -0.31 -3.68 10.42 -32.89 -0.34 -4.03 16 24 C 0.02 0.17 7.26 37.40 0.27 0.44 16 25 C 0.02 0.17 7.26 37.40 0.27 0.44 16 26 O -0.31 -3.85 10.42 -33.20 -0.35 -4.20 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.06 0.77 6.30 -51.93 -0.33 0.44 16 34 H 0.03 0.72 7.13 -51.93 -0.37 0.34 16 35 H 0.04 0.98 6.85 -51.93 -0.36 0.63 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.40 5.14 6.52 -40.82 -0.27 4.87 16 38 H 0.16 3.01 6.22 -52.49 -0.33 2.69 16 39 H 0.14 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -34.88 362.37 -8.48 -43.36 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -6.30 Total: 4.75 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -2.60 Total: 2.08 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.26 Total: -50.39 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.62 Total: -21.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.88 -8.48 -43.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185956151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.630 kcal (2) G-P(sol) polarization free energy of solvation -34.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds