Wall clock time and date at job start Tue Mar 31 2020 12:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47057 * 2 1 4 4 N 1.46507 * 109.46948 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00185 * 269.99600 * 4 3 2 6 6 C 1.50691 * 109.47446 * 270.00259 * 5 4 3 7 7 H 1.08003 * 120.00399 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00224 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00187 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 119.99777 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47084 * 89.99956 * 10 8 6 12 12 H 1.48502 * 109.47156 * 209.99782 * 10 8 6 13 13 H 1.48498 * 109.47312 * 330.00020 * 10 8 6 14 14 C 1.34782 * 119.99733 * 90.00314 * 4 3 2 15 15 O 1.21593 * 119.99343 * 180.02562 * 14 4 3 16 16 N 1.34771 * 119.99903 * 359.97438 * 14 4 3 17 17 C 1.40139 * 119.99541 * 184.59684 * 16 14 4 18 18 C 1.38833 * 120.01782 * 324.87915 * 17 16 14 19 19 C 1.38140 * 120.03903 * 180.10235 * 18 17 16 20 20 C 1.38701 * 120.16296 * 359.94330 * 19 18 17 21 21 C 1.38992 * 119.92837 * 359.95597 * 20 19 18 22 22 C 1.38652 * 119.88502 * 0.12774 * 21 20 19 23 23 O 1.36113 * 120.78232 * 180.39238 * 21 20 19 24 24 C 1.43173 * 116.70619 * 342.55966 * 23 21 20 25 25 C 1.53463 * 108.23626 * 46.31925 * 24 23 21 26 26 O 1.36210 * 119.32596 * 179.80778 * 20 19 18 27 27 H 1.09002 * 109.47330 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47281 * 300.00211 * 1 2 3 29 29 H 1.08998 * 109.46823 * 60.00298 * 1 2 3 30 30 H 1.08998 * 109.47281 * 239.99789 * 2 1 3 31 31 H 1.09004 * 109.46728 * 120.00159 * 2 1 3 32 32 H 1.09004 * 109.47273 * 60.00220 * 3 2 1 33 33 H 1.09004 * 109.47481 * 299.99698 * 3 2 1 34 34 H 1.09002 * 109.46646 * 30.00739 * 5 4 3 35 35 H 1.08991 * 109.46836 * 149.99920 * 5 4 3 36 36 H 0.97001 * 119.99536 * 180.02562 * 9 8 6 37 37 H 0.97000 * 120.00361 * 4.58974 * 16 14 4 38 38 H 1.07995 * 119.98404 * 0.11842 * 18 17 16 39 39 H 1.08005 * 119.91834 * 179.97438 * 19 18 17 40 40 H 1.08001 * 119.98786 * 180.16752 * 22 21 20 41 41 H 1.08999 * 109.71026 * 286.63231 * 24 23 21 42 42 H 1.09004 * 109.70914 * 166.00605 * 24 23 21 43 43 H 1.08993 * 109.71072 * 180.57268 * 25 24 23 44 44 H 1.09008 * 109.74253 * 59.97149 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4427 1.2696 6 6 4.4880 2.8634 1.7045 7 1 4.1377 3.6843 1.0963 8 6 5.1649 3.1156 2.8790 9 7 5.3835 4.3556 3.2588 10 14 5.7714 1.6960 3.9306 11 1 7.1452 1.3200 3.5102 12 1 5.7857 2.1076 5.3574 13 1 4.8656 0.5316 3.7605 14 6 4.1794 1.4423 -1.1664 15 8 5.3953 1.4418 -1.1658 16 7 3.5059 1.4417 -2.3338 17 6 4.2038 1.3443 -3.5451 18 6 5.4474 1.9464 -3.6806 19 6 6.1348 1.8525 -4.8751 20 6 5.5863 1.1561 -5.9419 21 6 4.3424 0.5504 -5.8086 22 6 3.6521 0.6465 -4.6100 23 8 3.7914 -0.1439 -6.8415 24 6 4.3384 0.0963 -8.1427 25 6 5.8688 0.0605 -8.0344 26 8 6.2770 1.0776 -7.1132 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.6476 0.9289 2.0291 35 1 5.1894 0.9288 1.1397 36 1 5.8600 4.5329 4.0848 37 1 2.5382 1.5085 -2.3355 38 1 5.8778 2.4884 -2.8515 39 1 7.1019 2.3220 -4.9785 40 1 2.6867 0.1742 -4.5037 41 1 4.0180 1.0745 -8.5013 42 1 4.0004 -0.6774 -8.8321 43 1 6.3110 0.2511 -9.0121 44 1 6.1894 -0.9156 -7.6700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185956151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:54 Heat of formation + Delta-G solvation = -87.380110 kcal Electronic energy + Delta-G solvation = -27046.715039 eV Core-core repulsion = 23157.435749 eV Total energy + Delta-G solvation = -3889.279290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.86 seconds Orbital eigenvalues (eV) -42.30420 -41.49050 -38.93226 -38.20483 -37.26017 -35.66398 -34.81577 -33.64511 -31.92165 -31.34217 -30.06464 -28.72168 -26.95819 -25.80149 -24.54665 -23.85794 -22.77057 -22.02316 -20.78120 -19.89415 -19.16752 -19.01088 -18.68924 -18.03311 -17.30092 -16.65370 -16.57822 -16.18990 -15.89738 -15.77623 -15.55466 -15.37699 -15.26934 -14.89638 -14.85890 -14.49723 -14.30980 -14.22633 -13.69248 -13.57540 -13.18189 -13.00698 -12.90046 -12.74554 -12.56787 -12.34399 -12.20835 -11.95598 -11.95217 -11.72047 -11.62290 -11.48556 -11.11950 -10.81869 -10.76263 -9.61382 -9.45887 -8.70914 -8.31936 -6.36726 0.17471 0.26239 1.33825 1.38841 1.46311 1.58408 1.98026 2.20898 2.32631 2.34513 2.70664 2.94484 3.03790 3.31811 3.68911 3.96335 4.00112 4.07394 4.08729 4.13923 4.24825 4.36523 4.40185 4.50035 4.58978 4.61819 4.71551 4.73846 4.76582 4.83469 4.91639 5.02891 5.06201 5.21626 5.24299 5.27955 5.35099 5.45376 5.48600 5.60753 5.79240 5.89977 5.98397 6.28205 6.41371 6.64592 6.97610 7.24743 7.57136 8.85080 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003269 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.663464 B = 8564.229237 C = 9829.617556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.105 3.895 4 N -0.608 5.608 5 C 0.243 3.757 6 C -0.534 4.534 7 H 0.028 0.972 8 C 0.012 3.988 9 N -0.946 5.946 10 Si 0.946 3.054 11 H -0.277 1.277 12 H -0.276 1.276 13 H -0.236 1.236 14 C 0.697 3.303 15 O -0.615 6.615 16 N -0.672 5.672 17 C 0.166 3.834 18 C -0.134 4.134 19 C -0.100 4.100 20 C 0.026 3.974 21 C 0.068 3.932 22 C -0.139 4.139 23 O -0.315 6.315 24 C 0.015 3.985 25 C 0.012 3.988 26 O -0.323 6.323 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.419 0.581 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.161 0.839 41 H 0.083 0.917 42 H 0.158 0.842 43 H 0.155 0.845 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 -12.640 -22.321 27.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C -0.018 4.018 4 N -0.341 5.341 5 C 0.120 3.880 6 C -0.573 4.573 7 H 0.047 0.953 8 C -0.186 4.186 9 N -0.586 5.586 10 Si 0.769 3.231 11 H -0.203 1.203 12 H -0.201 1.201 13 H -0.159 1.159 14 C 0.399 3.601 15 O -0.495 6.495 16 N -0.323 5.323 17 C 0.071 3.929 18 C -0.155 4.155 19 C -0.119 4.119 20 C -0.019 4.019 21 C 0.022 3.978 22 C -0.160 4.160 23 O -0.230 6.230 24 C -0.059 4.059 25 C -0.063 4.063 26 O -0.238 6.238 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.260 0.740 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.178 0.822 41 H 0.101 0.899 42 H 0.175 0.825 43 H 0.172 0.828 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.337 -12.569 -22.138 26.787 hybrid contribution 0.384 0.255 0.802 0.925 sum -7.953 -12.313 -21.336 25.886 Atomic orbital electron populations 1.21673 0.92866 1.02736 1.02778 1.21931 0.97775 0.95424 1.02363 1.21824 0.77865 0.98272 1.03804 1.47194 1.07401 1.75217 1.04332 1.19243 0.92413 0.95271 0.81059 1.21572 1.36726 0.92436 1.06585 0.95319 1.25819 0.95312 0.98529 0.98938 1.70054 1.42793 1.21274 1.24478 0.85740 0.79608 0.79988 0.77756 1.20303 1.20080 1.15943 1.16051 0.85049 0.77919 0.81084 1.90858 1.13598 1.58639 1.86360 1.42512 1.10602 1.77041 1.02170 1.17208 0.93343 0.97199 0.85185 1.21075 0.95839 1.01221 0.97330 1.20378 1.00871 1.00940 0.89746 1.18844 0.91381 1.03472 0.88217 1.18465 0.91261 0.98086 0.89960 1.20067 1.02742 1.02497 0.90707 1.86272 1.59038 1.61990 1.15725 1.23993 0.93674 1.05818 0.82419 1.23983 0.95959 0.91300 0.95063 1.86301 1.56892 1.54748 1.25864 0.91457 0.92429 0.91132 0.91690 0.92552 0.90216 0.89496 0.92901 0.96184 0.92311 0.74036 0.86182 0.83935 0.82192 0.89925 0.82493 0.82775 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 71.98 0.71 -1.63 16 2 C -0.14 -3.12 6.26 30.59 0.19 -2.93 16 3 C 0.10 3.07 5.21 86.38 0.45 3.52 16 4 N -0.61 -24.87 2.46 -844.20 -2.07 -26.94 16 5 C 0.24 11.84 4.23 85.63 0.36 12.21 16 6 C -0.53 -31.55 9.94 25.60 0.25 -31.30 16 7 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 8 C 0.01 0.71 5.47 84.65 0.46 1.17 16 9 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 10 Si 0.95 44.63 27.47 68.60 1.88 46.52 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 14 C 0.70 29.51 8.12 179.05 1.45 30.97 16 15 O -0.61 -31.78 13.36 -4.01 -0.05 -31.83 16 16 N -0.67 -21.46 5.22 -317.14 -1.66 -23.12 16 17 C 0.17 5.29 6.30 38.08 0.24 5.53 16 18 C -0.13 -4.77 8.69 22.39 0.19 -4.57 16 19 C -0.10 -3.07 9.95 22.36 0.22 -2.85 16 20 C 0.03 0.72 6.50 22.56 0.15 0.87 16 21 C 0.07 1.74 6.49 22.55 0.15 1.89 16 22 C -0.14 -3.58 9.88 22.49 0.22 -3.35 16 23 O -0.32 -6.50 10.42 -82.61 -0.86 -7.36 16 24 C 0.02 0.18 7.26 72.14 0.52 0.71 16 25 C 0.01 0.15 7.26 72.14 0.52 0.67 16 26 O -0.32 -7.48 10.42 -83.72 -0.87 -8.35 16 27 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 2.50 8.07 -2.39 -0.02 2.48 16 33 H 0.09 2.05 6.30 -2.39 -0.02 2.04 16 34 H 0.05 2.36 7.13 -2.39 -0.02 2.34 16 35 H 0.02 1.06 6.85 -2.39 -0.02 1.04 16 36 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 37 H 0.42 10.13 6.52 -92.71 -0.60 9.52 16 38 H 0.12 5.14 6.22 -2.91 -0.02 5.12 16 39 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 40 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.16 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.15 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -81.15 362.37 3.13 -78.02 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.36 Total: 22.05 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.11 Total: 10.90 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -3.43 Total: -109.94 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -1.79 Total: -47.54 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -81.15 3.13 -78.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185956151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.364 kcal (2) G-P(sol) polarization free energy of solvation -81.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds