Wall clock time and date at job start Tue Mar 31 2020 12:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 N 1.46497 * 109.46767 * 179.97438 * 3 2 1 5 5 C 1.46493 * 119.99932 * 269.99671 * 4 3 2 6 6 C 1.50700 * 109.47023 * 269.99976 * 5 4 3 7 7 H 1.08002 * 120.00367 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00239 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00626 * 180.02562 * 8 6 5 10 10 Si 1.86809 * 119.99813 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46886 * 90.00022 * 10 8 6 12 12 H 1.48497 * 109.47272 * 210.00099 * 10 8 6 13 13 H 1.48497 * 109.46912 * 330.00370 * 10 8 6 14 14 C 1.34782 * 119.99669 * 90.00135 * 4 3 2 15 15 O 1.21586 * 119.99395 * 179.97438 * 14 4 3 16 16 N 1.34775 * 120.00575 * 359.97438 * 14 4 3 17 17 C 1.39398 * 120.00484 * 184.55317 * 16 14 4 18 18 C 1.39153 * 119.92087 * 144.84125 * 17 16 14 19 19 C 1.37634 * 120.07818 * 180.27736 * 18 17 16 20 20 C 1.39823 * 119.91890 * 359.51899 * 19 18 17 21 21 C 1.47451 * 120.07851 * 180.22730 * 20 19 18 22 22 O 1.21502 * 119.99570 * 180.24871 * 21 20 19 23 23 O 1.34745 * 119.99825 * 0.25764 * 21 20 19 24 24 C 1.45209 * 116.99932 * 179.97438 * 23 21 20 25 25 C 1.39816 * 119.84068 * 0.48541 * 20 19 18 26 26 C 1.37632 * 119.91904 * 359.74306 * 25 20 19 27 27 H 1.08993 * 109.47450 * 300.00645 * 1 2 3 28 28 H 1.08999 * 109.46783 * 60.00475 * 1 2 3 29 29 H 1.09003 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47295 * 239.99586 * 2 1 3 31 31 H 1.08999 * 109.46783 * 119.99525 * 2 1 3 32 32 H 1.08992 * 109.46869 * 59.99152 * 3 2 1 33 33 H 1.09002 * 109.46739 * 299.99854 * 3 2 1 34 34 H 1.08994 * 109.47617 * 30.00008 * 5 4 3 35 35 H 1.09000 * 109.47406 * 150.00854 * 5 4 3 36 36 H 0.96999 * 120.00228 * 180.02562 * 9 8 6 37 37 H 0.97003 * 119.99399 * 4.55066 * 16 14 4 38 38 H 1.07994 * 119.96227 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.04175 * 179.74424 * 19 18 17 40 40 H 1.09001 * 109.47021 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.46594 * 299.99849 * 24 23 21 42 42 H 1.08996 * 109.46812 * 59.99115 * 24 23 21 43 43 H 1.08001 * 120.04023 * 179.73252 * 25 20 19 44 44 H 1.08001 * 119.95886 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2369 1.4428 1.2696 6 6 4.4880 2.8637 1.7044 7 1 4.1370 3.6845 1.0965 8 6 5.1657 3.1159 2.8783 9 7 5.3844 4.3559 3.2581 10 14 5.7734 1.6962 3.9295 11 1 7.1469 1.3207 3.5079 12 1 5.7887 2.1078 5.3562 13 1 4.8678 0.5317 3.7599 14 6 4.1794 1.4423 -1.1664 15 8 5.3952 1.4428 -1.1658 16 7 3.5060 1.4417 -2.3339 17 6 4.2002 1.3457 -3.5389 18 6 3.6459 0.6442 -4.6052 19 6 4.3311 0.5426 -5.7946 20 6 5.5809 1.1537 -5.9339 21 6 6.3157 1.0512 -7.2082 22 8 7.4037 1.5790 -7.3261 23 8 5.7804 0.3725 -8.2418 24 6 6.5595 0.3133 -9.4658 25 6 6.1347 1.8576 -4.8603 26 6 5.4460 1.9511 -3.6724 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6476 0.9291 2.0291 35 1 5.1895 0.9290 1.1398 36 1 5.8615 4.5333 4.0838 37 1 2.5383 1.5080 -2.3356 38 1 2.6792 0.1749 -4.4979 39 1 3.9022 -0.0055 -6.6205 40 1 6.0151 -0.2608 -10.2156 41 1 6.7310 1.3239 -9.8364 42 1 7.5169 -0.1670 -9.2642 43 1 7.1019 2.3272 -4.9629 44 1 5.8730 2.4950 -2.8427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187776655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:05 Heat of formation + Delta-G solvation = -79.772738 kcal Electronic energy + Delta-G solvation = -26469.547358 eV Core-core repulsion = 22580.597949 eV Total energy + Delta-G solvation = -3888.949410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78155 -40.25850 -38.49160 -36.54410 -35.99760 -34.68724 -33.15310 -32.16628 -31.06474 -30.33947 -28.27810 -27.55891 -25.84859 -24.07353 -22.93188 -22.32794 -21.71740 -20.89878 -19.51686 -18.30516 -17.81838 -17.29941 -16.99486 -16.89355 -16.47294 -15.34749 -15.19098 -14.80545 -14.61166 -14.43628 -13.99015 -13.88768 -13.71331 -13.62354 -13.44443 -13.27257 -12.62294 -12.58588 -12.43462 -12.28182 -12.09215 -12.04856 -11.51090 -11.39040 -11.27729 -10.99070 -10.95513 -10.70838 -10.65044 -10.53987 -10.30395 -10.15369 -9.64022 -9.44646 -9.00717 -8.62498 -8.23641 -7.77751 -6.12256 -4.11644 0.65399 1.37977 2.45621 2.56030 2.93717 3.27005 3.32688 3.35377 3.52579 3.88125 4.15181 4.36166 4.62071 4.82557 4.86395 4.91120 4.95131 4.96519 5.06793 5.19883 5.25134 5.25881 5.28302 5.39902 5.45922 5.56465 5.71989 5.84122 5.93031 5.98836 6.03496 6.13715 6.18533 6.26012 6.32271 6.35642 6.52850 6.56261 6.80836 7.01837 7.13497 7.34825 7.56087 7.64386 8.29578 8.42353 8.89685 8.98975 9.47416 11.00979 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.002994 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.978664 B = 9349.451451 C =10743.826749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.110 3.890 4 N -0.599 5.599 5 C 0.231 3.769 6 C -0.531 4.531 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.896 5.896 10 Si 0.876 3.124 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.700 3.300 15 O -0.563 6.563 16 N -0.693 5.693 17 C 0.221 3.779 18 C -0.173 4.173 19 C -0.040 4.040 20 C -0.164 4.164 21 C 0.513 3.487 22 O -0.512 6.512 23 O -0.358 6.358 24 C 0.037 3.963 25 C -0.030 4.030 26 C -0.136 4.136 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.033 0.967 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.406 0.594 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.138 0.862 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 -10.196 -18.897 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.014 4.014 4 N -0.333 5.333 5 C 0.110 3.890 6 C -0.569 4.569 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.402 3.598 15 O -0.438 6.438 16 N -0.341 5.341 17 C 0.123 3.877 18 C -0.194 4.194 19 C -0.059 4.059 20 C -0.166 4.166 21 C 0.359 3.641 22 O -0.401 6.401 23 O -0.275 6.275 24 C -0.057 4.057 25 C -0.049 4.049 26 C -0.156 4.156 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.243 0.757 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.156 0.844 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.579 -9.935 -18.638 22.440 hybrid contribution -0.035 -0.529 0.544 0.759 sum -7.614 -10.464 -18.095 22.246 Atomic orbital electron populations 1.21704 0.95306 1.01640 1.01991 1.22032 0.95859 0.97806 1.02751 1.21526 0.80833 0.95982 1.03062 1.47256 1.05524 1.74883 1.05589 1.19633 0.92217 0.98450 0.78689 1.21319 1.37201 0.91226 1.07202 0.90735 1.24842 0.95195 0.95553 0.97326 1.69890 1.41300 1.18650 1.23569 0.86867 0.80213 0.82871 0.79812 1.19845 1.21062 1.19074 1.15887 0.85499 0.78346 0.80064 1.90910 1.11244 1.56261 1.85402 1.42961 1.10382 1.77009 1.03761 1.17884 0.92634 0.92383 0.84836 1.20819 1.02386 1.02635 0.93561 1.21107 0.92418 0.95418 0.96935 1.18971 0.97235 1.08431 0.91977 1.21218 0.83924 0.74951 0.84021 1.90835 1.21279 1.44838 1.83145 1.86546 1.49653 1.68672 1.22621 1.23249 0.96342 1.02790 0.83303 1.21165 0.99180 0.94091 0.90449 1.21478 0.95070 1.00806 0.98286 0.92300 0.92784 0.92734 0.92210 0.91206 0.89090 0.92067 0.94945 0.94349 0.92504 0.75680 0.85027 0.84452 0.88122 0.91904 0.91892 0.84384 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.15 -1.68 6.26 -26.72 -0.17 -1.85 16 3 C 0.11 1.56 5.21 -4.04 -0.02 1.54 16 4 N -0.60 -11.55 2.46 -180.81 -0.44 -11.99 16 5 C 0.23 5.39 4.23 -5.20 -0.02 5.37 16 6 C -0.53 -14.77 9.94 -34.44 -0.34 -15.11 16 7 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 8 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 10 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 14 C 0.70 13.67 8.11 -86.92 -0.71 12.97 16 15 O -0.56 -13.28 13.33 5.29 0.07 -13.21 16 16 N -0.69 -10.10 5.19 -14.22 -0.07 -10.17 16 17 C 0.22 3.13 6.30 -83.74 -0.53 2.61 16 18 C -0.17 -1.90 9.94 -39.46 -0.39 -2.29 16 19 C -0.04 -0.43 9.60 -39.21 -0.38 -0.81 16 20 C -0.16 -2.13 5.88 -104.96 -0.62 -2.74 16 21 C 0.51 6.77 7.89 34.48 0.27 7.04 16 22 O -0.51 -8.00 16.13 -19.27 -0.31 -8.31 16 23 O -0.36 -3.85 9.81 -40.61 -0.40 -4.24 16 24 C 0.04 0.28 10.57 101.05 1.07 1.35 16 25 C -0.03 -0.43 9.58 -39.21 -0.38 -0.80 16 26 C -0.14 -2.16 8.66 -39.46 -0.34 -2.50 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.06 0.71 6.30 -51.93 -0.33 0.38 16 34 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 35 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.41 4.56 6.51 -40.82 -0.27 4.29 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.14 1.15 7.60 -52.49 -0.40 0.75 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.14 1.93 7.64 -52.49 -0.40 1.53 16 44 H 0.16 2.91 6.21 -52.49 -0.33 2.59 16 LS Contribution 372.51 15.07 5.61 5.61 Total: -1.00 -34.64 372.51 -7.97 -42.61 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.26 Total: 3.85 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -2.28 Total: 5.82 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.26 Total: -48.58 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.64 Total: -25.77 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.64 -7.97 -42.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187776655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.163 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds