Wall clock time and date at job start Tue Mar 31 2020 12:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46959 * 2 1 4 4 N 1.46497 * 109.46767 * 179.97438 * 3 2 1 5 5 C 1.46493 * 119.99932 * 269.99671 * 4 3 2 6 6 C 1.50700 * 109.47023 * 269.99976 * 5 4 3 7 7 H 1.08002 * 120.00367 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00239 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00626 * 180.02562 * 8 6 5 10 10 Si 1.86809 * 119.99813 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.46886 * 90.00022 * 10 8 6 12 12 H 1.48497 * 109.47272 * 210.00099 * 10 8 6 13 13 H 1.48497 * 109.46912 * 330.00370 * 10 8 6 14 14 C 1.34782 * 119.99669 * 90.00135 * 4 3 2 15 15 O 1.21586 * 119.99395 * 179.97438 * 14 4 3 16 16 N 1.34775 * 120.00575 * 359.97438 * 14 4 3 17 17 C 1.39398 * 120.00484 * 184.55317 * 16 14 4 18 18 C 1.39153 * 119.92087 * 144.84125 * 17 16 14 19 19 C 1.37634 * 120.07818 * 180.27736 * 18 17 16 20 20 C 1.39823 * 119.91890 * 359.51899 * 19 18 17 21 21 C 1.47451 * 120.07851 * 180.22730 * 20 19 18 22 22 O 1.21502 * 119.99570 * 180.24871 * 21 20 19 23 23 O 1.34745 * 119.99825 * 0.25764 * 21 20 19 24 24 C 1.45209 * 116.99932 * 179.97438 * 23 21 20 25 25 C 1.39816 * 119.84068 * 0.48541 * 20 19 18 26 26 C 1.37632 * 119.91904 * 359.74306 * 25 20 19 27 27 H 1.08993 * 109.47450 * 300.00645 * 1 2 3 28 28 H 1.08999 * 109.46783 * 60.00475 * 1 2 3 29 29 H 1.09003 * 109.46973 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47295 * 239.99586 * 2 1 3 31 31 H 1.08999 * 109.46783 * 119.99525 * 2 1 3 32 32 H 1.08992 * 109.46869 * 59.99152 * 3 2 1 33 33 H 1.09002 * 109.46739 * 299.99854 * 3 2 1 34 34 H 1.08994 * 109.47617 * 30.00008 * 5 4 3 35 35 H 1.09000 * 109.47406 * 150.00854 * 5 4 3 36 36 H 0.96999 * 120.00228 * 180.02562 * 9 8 6 37 37 H 0.97003 * 119.99399 * 4.55066 * 16 14 4 38 38 H 1.07994 * 119.96227 * 359.97438 * 18 17 16 39 39 H 1.08001 * 120.04175 * 179.74424 * 19 18 17 40 40 H 1.09001 * 109.47021 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.46594 * 299.99849 * 24 23 21 42 42 H 1.08996 * 109.46812 * 59.99115 * 24 23 21 43 43 H 1.08001 * 120.04023 * 179.73252 * 25 20 19 44 44 H 1.08001 * 119.95886 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2369 1.4428 1.2696 6 6 4.4880 2.8637 1.7044 7 1 4.1370 3.6845 1.0965 8 6 5.1657 3.1159 2.8783 9 7 5.3844 4.3559 3.2581 10 14 5.7734 1.6962 3.9295 11 1 7.1469 1.3207 3.5079 12 1 5.7887 2.1078 5.3562 13 1 4.8678 0.5317 3.7599 14 6 4.1794 1.4423 -1.1664 15 8 5.3952 1.4428 -1.1658 16 7 3.5060 1.4417 -2.3339 17 6 4.2002 1.3457 -3.5389 18 6 3.6459 0.6442 -4.6052 19 6 4.3311 0.5426 -5.7946 20 6 5.5809 1.1537 -5.9339 21 6 6.3157 1.0512 -7.2082 22 8 7.4037 1.5790 -7.3261 23 8 5.7804 0.3725 -8.2418 24 6 6.5595 0.3133 -9.4658 25 6 6.1347 1.8576 -4.8603 26 6 5.4460 1.9511 -3.6724 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.6476 0.9291 2.0291 35 1 5.1895 0.9290 1.1398 36 1 5.8615 4.5333 4.0838 37 1 2.5383 1.5080 -2.3356 38 1 2.6792 0.1749 -4.4979 39 1 3.9022 -0.0055 -6.6205 40 1 6.0151 -0.2608 -10.2156 41 1 6.7310 1.3239 -9.8364 42 1 7.5169 -0.1670 -9.2642 43 1 7.1019 2.3272 -4.9629 44 1 5.8730 2.4950 -2.8427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187776655.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:00 Heat of formation + Delta-G solvation = -101.737014 kcal Electronic energy + Delta-G solvation = -26470.499801 eV Core-core repulsion = 22580.597949 eV Total energy + Delta-G solvation = -3889.901852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -41.97454 -41.41244 -39.65082 -37.54742 -37.34923 -36.04061 -34.90573 -33.66286 -32.10695 -31.56160 -29.88928 -28.40835 -26.98931 -25.42712 -24.06554 -23.87038 -22.69654 -21.94866 -20.88952 -19.51980 -19.11588 -18.91194 -18.48028 -18.00044 -17.37264 -16.82799 -16.64296 -16.09283 -15.75738 -15.57876 -15.43271 -15.22760 -14.79428 -14.54333 -14.52535 -14.42163 -14.23766 -13.74998 -13.63587 -13.61798 -13.16818 -13.01675 -12.94339 -12.75840 -12.36204 -12.32965 -12.23389 -11.96114 -11.80831 -11.73760 -11.72575 -11.62386 -11.47095 -11.01726 -10.82498 -10.04907 -9.63149 -9.14601 -8.33459 -6.38444 -0.41316 0.36581 1.32338 1.36991 1.37889 1.45139 1.61463 1.70240 2.11335 2.31130 2.77636 2.87479 3.02006 3.70484 3.85105 3.94693 3.96569 4.12173 4.23047 4.30902 4.34113 4.35944 4.41890 4.50450 4.59892 4.72358 4.73870 4.76263 4.85542 4.96085 5.03305 5.06965 5.21617 5.23537 5.25012 5.28687 5.30234 5.43439 5.45757 5.48480 5.59237 5.88466 5.93385 6.25668 6.63051 6.66822 6.92415 7.22987 7.51523 8.83439 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.002994 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.978664 B = 9349.451451 C =10743.826749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.103 3.897 4 N -0.606 5.606 5 C 0.242 3.758 6 C -0.534 4.534 7 H 0.028 0.972 8 C 0.011 3.989 9 N -0.946 5.946 10 Si 0.946 3.054 11 H -0.279 1.279 12 H -0.276 1.276 13 H -0.235 1.235 14 C 0.695 3.305 15 O -0.614 6.614 16 N -0.672 5.672 17 C 0.202 3.798 18 C -0.148 4.148 19 C -0.023 4.023 20 C -0.168 4.168 21 C 0.516 3.484 22 O -0.545 6.545 23 O -0.351 6.351 24 C 0.029 3.971 25 C -0.041 4.041 26 C -0.159 4.159 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.424 0.576 38 H 0.177 0.823 39 H 0.176 0.824 40 H 0.139 0.861 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.788 -13.468 -20.844 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.019 4.019 4 N -0.339 5.339 5 C 0.119 3.881 6 C -0.573 4.573 7 H 0.047 0.953 8 C -0.187 4.187 9 N -0.586 5.586 10 Si 0.769 3.231 11 H -0.204 1.204 12 H -0.201 1.201 13 H -0.158 1.158 14 C 0.397 3.603 15 O -0.493 6.493 16 N -0.322 5.322 17 C 0.105 3.895 18 C -0.168 4.168 19 C -0.041 4.041 20 C -0.170 4.170 21 C 0.363 3.637 22 O -0.437 6.437 23 O -0.267 6.267 24 C -0.064 4.064 25 C -0.060 4.060 26 C -0.180 4.180 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.265 0.735 38 H 0.194 0.806 39 H 0.193 0.807 40 H 0.157 0.843 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.145 0.855 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -10.595 -13.227 -20.644 26.710 hybrid contribution 0.862 0.560 0.948 1.398 sum -9.733 -12.667 -19.697 25.361 Atomic orbital electron populations 1.21677 0.92866 1.02758 1.02793 1.21936 0.97751 0.95256 1.02503 1.21858 0.77670 0.98439 1.03929 1.47205 1.07516 1.74877 1.04301 1.19255 0.92457 0.95248 0.81125 1.21561 1.36693 0.92441 1.06597 0.95326 1.25829 0.95349 0.98509 0.98987 1.70049 1.42734 1.21293 1.24496 0.85747 0.79578 0.80030 0.77773 1.20432 1.20131 1.15784 1.16108 0.85043 0.77953 0.81229 1.90885 1.13717 1.58360 1.86349 1.42568 1.11007 1.76228 1.02386 1.18098 0.92321 0.93585 0.85523 1.21191 1.03478 1.00416 0.91747 1.21519 0.90872 0.93932 0.97792 1.19086 0.98270 1.08222 0.91426 1.21247 0.83345 0.74541 0.84571 1.90825 1.22766 1.46347 1.83767 1.86524 1.49686 1.67580 1.22915 1.23601 0.96809 1.03479 0.82549 1.21037 0.99020 0.95089 0.90836 1.21188 0.96736 1.02347 0.97747 0.92683 0.90895 0.91437 0.91264 0.92725 0.90344 0.89209 0.92791 0.96193 0.92321 0.73481 0.80607 0.80659 0.84302 0.92031 0.92188 0.85542 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.14 -2.76 6.26 30.60 0.19 -2.57 16 3 C 0.10 2.78 5.21 86.38 0.45 3.23 16 4 N -0.61 -23.50 2.46 -844.23 -2.07 -25.57 16 5 C 0.24 11.47 4.23 85.63 0.36 11.83 16 6 C -0.53 -31.01 9.94 25.60 0.25 -30.75 16 7 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 8 C 0.01 0.66 5.47 84.65 0.46 1.12 16 9 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 10 Si 0.95 44.13 27.47 68.60 1.88 46.02 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.23 -9.69 6.54 99.48 0.65 -9.04 16 14 C 0.69 27.68 8.11 179.05 1.45 29.13 16 15 O -0.61 -30.64 13.33 -3.99 -0.05 -30.69 16 16 N -0.67 -18.87 5.19 -317.17 -1.65 -20.51 16 17 C 0.20 5.52 6.30 38.38 0.24 5.77 16 18 C -0.15 -2.64 9.94 22.35 0.22 -2.42 16 19 C -0.02 -0.40 9.60 22.51 0.22 -0.18 16 20 C -0.17 -4.15 5.88 -20.08 -0.12 -4.27 16 21 C 0.52 13.02 7.89 70.25 0.55 13.57 16 22 O -0.55 -17.20 16.13 19.83 0.32 -16.88 16 23 O -0.35 -6.56 9.81 -56.56 -0.55 -7.11 16 24 C 0.03 0.36 10.57 113.37 1.20 1.56 16 25 C -0.04 -1.23 9.58 22.51 0.22 -1.01 16 26 C -0.16 -5.35 8.66 22.35 0.19 -5.16 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 33 H 0.09 1.86 6.30 -2.39 -0.02 1.84 16 34 H 0.05 2.33 7.13 -2.39 -0.02 2.31 16 35 H 0.02 1.03 6.85 -2.39 -0.02 1.01 16 36 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 37 H 0.42 8.34 6.51 -92.71 -0.60 7.73 16 38 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.18 1.86 7.60 -2.91 -0.02 1.84 16 40 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.13 3.94 7.64 -2.91 -0.02 3.92 16 44 H 0.11 4.81 6.21 -2.91 -0.02 4.79 16 Total: -1.00 -82.66 372.51 5.15 -77.51 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.36 Total: 18.18 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 6.61 Total: 18.53 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -3.42 Total: -105.54 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -0.29 Total: -54.69 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -82.66 5.15 -77.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187776655.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.224 kcal (2) G-P(sol) polarization free energy of solvation -82.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds