Wall clock time and date at job start Tue Mar 31 2020 12:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47309 * 2 1 4 4 H 1.08997 * 109.46757 * 305.00230 * 3 2 1 5 5 C 1.50693 * 109.47313 * 184.99800 * 3 2 1 6 6 H 1.07994 * 120.00185 * 239.99729 * 5 3 2 7 7 C 1.37880 * 119.99936 * 60.00316 * 5 3 2 8 8 N 1.31514 * 119.99869 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00127 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47106 * 59.99561 * 9 7 5 11 11 H 1.48502 * 109.47230 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46903 * 299.99704 * 9 7 5 13 13 N 1.46505 * 109.46863 * 64.99705 * 3 2 1 14 14 C 1.34771 * 120.00253 * 275.00443 * 13 3 2 15 15 O 1.21534 * 119.99770 * 359.97438 * 14 13 3 16 16 C 1.47992 * 120.00436 * 180.02562 * 14 13 3 17 17 C 1.39832 * 120.59385 * 305.22333 * 16 14 13 18 18 C 1.38472 * 118.35506 * 179.97438 * 17 16 14 19 19 C 1.38607 * 119.45695 * 359.97438 * 18 17 16 20 20 N 1.31620 * 121.18772 * 0.02562 * 19 18 17 21 21 C 1.32505 * 121.79143 * 359.69633 * 20 19 18 22 22 C 1.48220 * 119.79968 * 180.28970 * 21 20 19 23 23 O 1.21408 * 120.00032 * 174.47374 * 22 21 20 24 24 O 1.34667 * 120.00147 * 354.47631 * 22 21 20 25 25 C 1.45206 * 117.00127 * 179.97438 * 24 22 21 26 26 C 1.53004 * 109.46716 * 150.00072 * 25 24 22 27 27 C 1.53006 * 109.46932 * 269.99893 * 25 24 22 28 28 H 1.08999 * 109.47322 * 59.99749 * 1 2 3 29 29 H 1.09004 * 109.47292 * 300.00192 * 1 2 3 30 30 H 1.09003 * 109.47179 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47491 * 119.99605 * 2 1 3 32 32 H 1.08994 * 109.47290 * 239.99992 * 2 1 3 33 33 H 0.97001 * 120.00157 * 179.97438 * 8 7 5 34 34 H 0.97002 * 119.99416 * 95.00611 * 13 3 2 35 35 H 1.08005 * 120.82650 * 0.02562 * 17 16 14 36 36 H 1.07989 * 120.26904 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.40659 * 179.97438 * 19 18 17 38 38 H 1.08992 * 109.46671 * 30.00163 * 25 24 22 39 39 H 1.08996 * 109.47002 * 60.00650 * 26 25 24 40 40 H 1.09004 * 109.46228 * 179.97438 * 26 25 24 41 41 H 1.08993 * 109.47091 * 299.99626 * 26 25 24 42 42 H 1.09000 * 109.46704 * 179.97438 * 27 25 24 43 43 H 1.08992 * 109.47251 * 300.00009 * 27 25 24 44 44 H 1.08997 * 109.46804 * 60.00391 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8813 -1.3818 10 1 6.5975 0.1474 -0.2348 11 1 6.3978 0.2168 -2.6504 12 1 6.4993 2.2816 -1.3821 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3409 2.6326 0.4322 16 6 0.0437 3.3265 2.6313 17 6 0.1089 2.6366 3.8459 18 6 -0.2679 3.3012 5.0008 19 6 -0.6941 4.6177 4.9214 20 7 -0.7479 5.2483 3.7674 21 6 -0.3937 4.6609 2.6337 22 6 -0.4655 5.4148 1.3596 23 8 -0.0483 4.9157 0.3345 24 8 -0.9935 6.6535 1.3390 25 6 -1.0310 7.3330 0.0563 26 6 -2.2295 8.2833 0.0175 27 6 0.2598 8.1317 -0.1356 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.8292 -0.0610 -2.9498 34 1 2.2719 2.1232 1.9978 35 1 0.4457 1.6111 3.8824 36 1 -0.2300 2.7978 5.9554 37 1 -0.9883 5.1351 5.8226 38 1 -1.1250 6.5969 -0.7420 39 1 -2.1354 9.0194 0.8158 40 1 -2.2573 8.7937 -0.9453 41 1 -3.1489 7.7143 0.1542 42 1 0.2318 8.6414 -1.0987 43 1 0.3537 8.8677 0.6628 44 1 1.1135 7.4546 -0.1079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194043690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:07 Heat of formation + Delta-G solvation = -109.249817 kcal Electronic energy + Delta-G solvation = -27707.958153 eV Core-core repulsion = 23817.730522 eV Total energy + Delta-G solvation = -3890.227632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22395 -40.94110 -40.08870 -37.94920 -36.86781 -34.55322 -34.26817 -33.74094 -32.97080 -32.24940 -29.02913 -28.26288 -26.74941 -25.57802 -24.82964 -23.41715 -22.21334 -21.74738 -21.20702 -19.65804 -19.29724 -18.16486 -17.72111 -17.57704 -17.23832 -17.12092 -16.39601 -16.14500 -15.81606 -15.41788 -15.25553 -14.92577 -14.75045 -14.59275 -14.38822 -14.09275 -13.82053 -13.56049 -13.46905 -13.22049 -13.20279 -13.17226 -12.93909 -12.77814 -12.67211 -12.21047 -12.09023 -11.98844 -11.92373 -11.61170 -11.54375 -11.12223 -11.10612 -10.97026 -10.61655 -10.50615 -10.35238 -9.63799 -8.16789 -6.34618 -0.75555 -0.05196 1.31768 1.39502 1.42376 1.45118 1.52690 1.84242 2.30372 2.49083 2.68651 3.02557 3.12325 3.61047 3.73780 3.75526 3.78702 3.87459 3.88655 4.07748 4.28887 4.41125 4.47753 4.55202 4.60820 4.68725 4.72377 4.74475 4.78925 4.91755 4.95430 5.04308 5.04653 5.15634 5.23783 5.36191 5.42531 5.44946 5.54690 5.59718 5.78428 5.91862 6.15888 6.43168 6.72213 6.73751 6.92379 7.31629 7.54047 8.88591 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011581 B = 0.004265 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.093901 B = 6563.169711 C = 7720.245765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.118 4.118 3 C 0.283 3.717 4 H -0.010 1.010 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.276 1.276 13 N -0.696 5.696 14 C 0.548 3.452 15 O -0.555 6.555 16 C -0.128 4.128 17 C -0.058 4.058 18 C -0.109 4.109 19 C 0.108 3.892 20 N -0.453 5.453 21 C 0.105 3.895 22 C 0.499 3.501 23 O -0.497 6.497 24 O -0.334 6.334 25 C 0.064 3.936 26 C -0.137 4.137 27 C -0.163 4.163 28 H 0.019 0.981 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.172 0.828 36 H 0.205 0.795 37 H 0.216 0.784 38 H 0.058 0.942 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.859 10.506 17.307 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.157 4.157 3 C 0.180 3.820 4 H 0.008 0.992 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.201 1.201 13 N -0.345 5.345 14 C 0.333 3.667 15 O -0.433 6.433 16 C -0.134 4.134 17 C -0.084 4.084 18 C -0.128 4.128 19 C -0.052 4.052 20 N -0.165 5.165 21 C -0.032 4.032 22 C 0.341 3.659 23 O -0.383 6.383 24 O -0.251 6.251 25 C 0.010 3.990 26 C -0.194 4.194 27 C -0.220 4.220 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.235 0.765 35 H 0.189 0.811 36 H 0.222 0.778 37 H 0.233 0.767 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.551 11.137 16.003 21.290 hybrid contribution 1.438 -0.969 -0.850 1.931 sum -7.114 10.168 15.154 19.586 Atomic orbital electron populations 1.21673 0.97131 0.99211 0.99985 1.21763 0.93568 0.98676 1.01654 1.18357 0.93628 0.89182 0.80844 0.99233 1.21520 0.91314 1.39085 1.06913 0.91284 1.25771 1.03414 0.94302 0.94868 1.70051 1.37168 1.38231 1.09797 0.85428 0.78976 0.78285 0.77817 1.18419 1.20984 1.20119 1.46124 1.14671 1.55945 1.17750 1.18304 0.82903 0.78464 0.87044 1.90758 1.52672 1.59497 1.40387 1.21026 1.01750 0.94473 0.96189 1.22160 0.95028 1.01664 0.89500 1.22995 0.94176 0.95214 1.00446 1.23925 0.93078 0.92822 0.95337 1.67683 1.12381 1.38196 0.98231 1.19826 1.01723 0.90311 0.91322 1.21308 0.75324 0.80835 0.88468 1.91051 1.44026 1.68510 1.34755 1.86663 1.73597 1.27354 1.37447 1.23117 0.99196 0.94142 0.82534 1.21864 0.94538 0.98207 1.04746 1.22182 0.95075 1.00169 1.04595 0.96222 0.93874 0.93104 0.93279 0.90943 0.92571 0.76454 0.81079 0.77838 0.76731 0.92336 0.90028 0.87989 0.92063 0.88345 0.89897 0.94917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.71 8.51 71.98 0.61 -5.10 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.76 16 3 C 0.28 15.29 2.24 44.25 0.10 15.39 16 4 H -0.01 -0.68 7.58 -2.39 -0.02 -0.69 16 5 C -0.55 -30.25 8.73 25.60 0.22 -30.03 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -53.78 11.29 21.45 0.24 -53.54 16 9 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 13 N -0.70 -30.86 5.01 -448.84 -2.25 -33.10 16 14 C 0.55 24.19 4.49 86.83 0.39 24.58 16 15 O -0.55 -29.58 11.86 19.18 0.23 -29.35 16 16 C -0.13 -4.29 5.68 -19.77 -0.11 -4.41 16 17 C -0.06 -1.22 9.91 22.71 0.23 -1.00 16 18 C -0.11 -1.35 10.10 22.41 0.23 -1.12 16 19 C 0.11 1.65 11.17 84.81 0.95 2.60 16 20 N -0.45 -12.09 10.11 -184.03 -1.86 -13.95 16 21 C 0.10 3.59 6.78 42.23 0.29 3.88 16 22 C 0.50 20.03 7.84 70.48 0.55 20.58 16 23 O -0.50 -24.31 12.21 27.78 0.34 -23.98 16 24 O -0.33 -11.40 9.71 -55.76 -0.54 -11.94 16 25 C 0.06 1.85 3.19 30.60 0.10 1.95 16 26 C -0.14 -2.65 9.57 71.98 0.69 -1.96 16 27 C -0.16 -4.09 9.55 71.98 0.69 -3.40 16 28 H 0.02 0.99 7.84 -2.39 -0.02 0.97 16 29 H 0.04 1.92 5.65 -2.38 -0.01 1.91 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.07 4.08 5.95 -2.39 -0.01 4.06 16 33 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 34 H 0.40 15.02 8.52 -92.71 -0.79 14.23 16 35 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.20 0.35 8.06 -2.92 -0.02 0.33 16 37 H 0.22 1.17 8.06 -2.91 -0.02 1.15 16 38 H 0.06 2.00 7.16 -2.39 -0.02 1.99 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -83.16 367.60 3.96 -79.21 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.23 Total: 23.98 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: 5.54 Total: 17.57 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -3.87 Total: -100.59 kcal Atomic # 8 Polarization: -65.29 SS G_CDS: 0.03 Total: -65.27 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -83.16 3.96 -79.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194043690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.044 kcal (2) G-P(sol) polarization free energy of solvation -83.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds