Wall clock time and date at job start Tue Mar 31 2020 12:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47294 * 2 1 4 4 N 1.46501 * 109.47202 * 120.00127 * 2 1 3 5 5 C 1.46497 * 119.99831 * 299.99861 * 4 2 1 6 6 C 1.34778 * 119.99565 * 119.99470 * 4 2 1 7 7 O 1.21340 * 120.00355 * 354.44501 * 6 4 2 8 8 C 1.49456 * 119.99404 * 174.44149 * 6 4 2 9 9 O 1.21350 * 120.00163 * 358.42102 * 8 6 4 10 10 N 1.34778 * 119.99807 * 178.42784 * 8 6 4 11 11 C 1.46494 * 119.99737 * 180.02562 * 10 8 6 12 12 C 1.50710 * 109.46935 * 179.97438 * 11 10 8 13 13 C 1.38317 * 119.96197 * 269.97941 * 12 11 10 14 14 C 1.38288 * 120.13263 * 180.02562 * 13 12 11 15 15 C 1.38122 * 120.06953 * 359.67816 * 14 13 12 16 16 C 1.38853 * 119.93121 * 0.59833 * 15 14 13 17 17 O 1.35745 * 120.06987 * 179.70305 * 16 15 14 18 18 C 1.34829 * 116.99961 * 356.35925 * 17 16 15 19 19 H 1.07998 * 120.00103 * 4.98188 * 18 17 16 20 20 C 1.38660 * 119.99828 * 184.98683 * 18 17 16 21 21 N 1.31556 * 120.00008 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99800 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47364 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47324 * 120.00048 * 22 20 18 25 25 H 1.48501 * 109.47432 * 239.99687 * 22 20 18 26 26 C 1.38081 * 119.96607 * 89.99594 * 12 11 10 27 27 H 1.08992 * 109.46922 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46449 * 300.00206 * 1 2 3 29 29 H 1.08996 * 109.47063 * 59.99534 * 1 2 3 30 30 H 1.08998 * 109.46568 * 240.00224 * 2 1 3 31 31 H 1.09002 * 109.47213 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46652 * 300.00315 * 3 2 1 33 33 H 1.08996 * 109.47063 * 59.99798 * 3 2 1 34 34 H 1.08999 * 109.46892 * 263.69735 * 5 4 2 35 35 H 1.08993 * 109.47592 * 23.69819 * 5 4 2 36 36 H 1.08999 * 109.46872 * 143.70153 * 5 4 2 37 37 H 0.97001 * 119.99730 * 359.97438 * 10 8 6 38 38 H 1.08997 * 109.47402 * 59.99837 * 11 10 8 39 39 H 1.09001 * 109.47146 * 299.99370 * 11 10 8 40 40 H 1.08000 * 119.93713 * 0.02562 * 13 12 11 41 41 H 1.08005 * 119.96288 * 179.97438 * 14 13 12 42 42 H 1.08003 * 120.03292 * 180.31788 * 15 14 13 43 43 H 0.96999 * 119.99562 * 180.02562 * 21 20 18 44 44 H 1.08005 * 120.03067 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5267 6 6 2.7932 -1.7865 1.0724 7 8 3.0034 -2.2602 -0.0248 8 6 3.3934 -2.4182 2.2866 9 8 3.2068 -1.9279 3.3808 10 7 4.1422 -3.5324 2.1662 11 6 4.7300 -4.1519 3.3565 12 6 5.5134 -5.3741 2.9517 13 6 4.8907 -6.6082 2.9008 14 6 5.6062 -7.7320 2.5304 15 6 6.9439 -7.6242 2.2035 16 6 7.5732 -6.3878 2.2592 17 8 8.8892 -6.2796 1.9444 18 6 9.5461 -7.4219 1.6588 19 1 9.0073 -8.3565 1.6080 20 6 10.9136 -7.3966 1.4304 21 7 11.5698 -6.2581 1.4919 22 14 11.8236 -8.9790 1.0341 23 1 10.8644 -10.1126 1.0244 24 1 12.4643 -8.8607 -0.3003 25 1 12.8658 -9.2219 2.0637 26 6 6.8520 -5.2609 2.6323 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 2.4699 0.4401 2.9039 35 1 0.7461 0.3934 2.4630 36 1 1.5143 -1.0314 3.2032 37 1 4.2911 -3.9245 1.2916 38 1 3.9363 -4.4411 4.0452 39 1 5.3944 -3.4399 3.8461 40 1 3.8436 -6.6942 3.1509 41 1 5.1173 -8.6944 2.4920 42 1 7.5008 -8.5015 1.9093 43 1 12.5263 -6.2405 1.3318 44 1 7.3377 -4.2971 2.6729 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258468498.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:33 Heat of formation + Delta-G solvation = -64.594216 kcal Electronic energy + Delta-G solvation = -25998.116624 eV Core-core repulsion = 22109.825404 eV Total energy + Delta-G solvation = -3888.291219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.94121 -39.29751 -38.66996 -37.03205 -36.76864 -34.68088 -32.47510 -32.34413 -30.90437 -29.19542 -27.60447 -27.30447 -26.61681 -25.36070 -24.16589 -21.75261 -21.15826 -20.84575 -19.74064 -18.26735 -17.52994 -17.32202 -16.94397 -16.30697 -15.96100 -15.29383 -15.13427 -14.92384 -14.46504 -14.35857 -14.34691 -14.07100 -13.65101 -13.55384 -13.27327 -13.26792 -12.80688 -12.67183 -12.55683 -12.45505 -12.39309 -12.20431 -11.69999 -11.65771 -11.51893 -11.39140 -11.14307 -10.95322 -10.85453 -10.72270 -10.46933 -9.51358 -9.41986 -9.24643 -8.98513 -8.90641 -8.27400 -7.34550 -6.50250 -4.09578 1.34899 1.77175 2.23420 2.36708 3.09268 3.10948 3.12219 3.16605 3.44741 3.91822 4.26797 4.48913 4.55060 4.68351 4.84059 4.87348 4.92478 5.04919 5.18811 5.20223 5.26761 5.36001 5.42242 5.48740 5.56270 5.63571 5.67198 5.76105 5.82516 5.84297 5.84543 6.04985 6.12848 6.22660 6.27277 6.52250 6.78991 6.80632 6.97548 7.14370 7.20625 7.26657 7.34282 7.63267 7.68803 7.93748 7.94196 8.95201 9.63541 10.67565 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.021394 B = 0.002291 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.469882 B =12217.608146 C =12767.354266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 C -0.161 4.161 4 N -0.586 5.586 5 C 0.076 3.924 6 C 0.507 3.493 7 O -0.519 6.519 8 C 0.504 3.496 9 O -0.522 6.522 10 N -0.687 5.687 11 C 0.167 3.833 12 C -0.077 4.077 13 C -0.193 4.193 14 C -0.076 4.076 15 C -0.224 4.224 16 C 0.150 3.850 17 O -0.175 6.175 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.169 4.169 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.416 0.584 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.270 0.730 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.063 10.280 0.091 22.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.023 3.977 3 C -0.219 4.219 4 N -0.320 5.320 5 C -0.066 4.066 6 C 0.289 3.711 7 O -0.395 6.395 8 C 0.285 3.715 9 O -0.400 6.400 10 N -0.339 5.339 11 C 0.045 3.955 12 C -0.078 4.078 13 C -0.213 4.213 14 C -0.094 4.094 15 C -0.243 4.243 16 C 0.096 3.904 17 O -0.079 6.079 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.767 3.233 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.189 4.189 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.252 0.748 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.668 10.655 0.250 22.370 hybrid contribution 0.587 -1.005 -0.545 1.285 sum -19.081 9.650 -0.294 21.384 Atomic orbital electron populations 1.22147 0.94464 1.02701 1.02585 1.21226 0.94486 0.93337 0.88613 1.22145 1.01989 0.95167 1.02605 1.47798 1.48845 1.26933 1.08426 1.22147 1.00351 1.01612 0.82511 1.20280 0.79901 0.81375 0.89519 1.90766 1.59518 1.61730 1.27447 1.20016 0.80521 0.81851 0.89152 1.90708 1.59313 1.62371 1.27594 1.46009 1.49270 1.26018 1.12621 1.20306 0.96462 0.92516 0.86241 1.19196 0.93217 0.93604 1.01754 1.20474 0.99092 0.92366 1.09368 1.20749 0.93760 0.97516 0.97366 1.21259 0.95559 0.98289 1.09233 1.19311 0.85888 0.92969 0.92211 1.83984 1.15888 1.34027 1.73951 1.21382 0.90799 0.85596 1.49138 0.88932 1.25310 0.95555 0.98943 0.96704 1.70047 1.09129 1.25145 1.45157 0.85633 0.79410 0.79894 0.78405 1.19071 1.20093 1.20101 1.20079 0.93331 0.97594 1.07855 0.92071 0.92053 0.91088 0.87825 0.92054 0.91102 0.92067 0.92001 0.91546 0.88691 0.74776 0.90295 0.90196 0.87437 0.87197 0.85375 0.91975 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.18 37.16 0.34 -0.69 16 2 C 0.13 1.07 3.24 -67.93 -0.22 0.85 16 3 C -0.16 -1.10 9.19 37.16 0.34 -0.76 16 4 N -0.59 -6.10 2.76 -174.44 -0.48 -6.58 16 5 C 0.08 0.66 8.26 59.85 0.49 1.15 16 6 C 0.51 6.69 7.73 -11.58 -0.09 6.60 16 7 O -0.52 -8.01 15.82 5.51 0.09 -7.92 16 8 C 0.50 6.91 7.75 -11.58 -0.09 6.82 16 9 O -0.52 -7.53 13.30 5.50 0.07 -7.46 16 10 N -0.69 -9.50 5.54 -61.91 -0.34 -9.85 16 11 C 0.17 2.35 5.80 -5.19 -0.03 2.32 16 12 C -0.08 -1.29 5.25 -104.65 -0.55 -1.84 16 13 C -0.19 -3.15 9.70 -39.53 -0.38 -3.53 16 14 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 15 C -0.22 -4.68 9.17 -39.40 -0.36 -5.05 16 16 C 0.15 3.51 6.65 -39.11 -0.26 3.25 16 17 O -0.18 -4.90 9.76 0.07 0.00 -4.90 16 18 C -0.39 -10.78 9.49 30.89 0.29 -10.49 16 19 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 22 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 26 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.34 6.67 -51.93 -0.35 -0.01 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 1.05 6.91 -51.93 -0.36 0.69 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 34 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 35 H 0.07 0.41 6.44 -51.93 -0.33 0.07 16 36 H 0.09 0.94 5.91 -51.93 -0.31 0.64 16 37 H 0.42 5.85 7.94 -40.82 -0.32 5.52 16 38 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 39 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 40 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 42 H 0.13 2.69 5.62 -52.48 -0.30 2.40 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -31.36 370.01 -6.73 -38.09 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.99 Total: 7.92 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.39 Total: -5.90 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.07 Total: -40.64 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.16 Total: -20.28 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.36 -6.73 -38.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258468498.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.507 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds