Wall clock time and date at job start Tue Mar 31 2020 12:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09002 * 109.47393 * 136.68384 * 3 2 1 5 5 N 1.46497 * 109.47230 * 16.68482 * 3 2 1 6 6 C 1.34781 * 120.00356 * 84.99859 * 5 3 2 7 7 O 1.21345 * 119.99504 * 0.02562 * 6 5 3 8 8 C 1.49445 * 120.00194 * 180.02562 * 6 5 3 9 9 O 1.21352 * 120.00035 * 5.17329 * 8 6 5 10 10 N 1.34780 * 119.99848 * 185.17653 * 8 6 5 11 11 C 1.46502 * 119.99960 * 175.09416 * 10 8 6 12 12 C 1.52995 * 109.47068 * 185.84523 * 11 10 8 13 13 C 1.50694 * 115.56378 * 33.20746 * 12 11 10 14 14 H 1.08007 * 119.99992 * 265.33874 * 13 12 11 15 15 C 1.37875 * 120.00467 * 85.33070 * 13 12 11 16 16 N 1.31510 * 120.00388 * 180.88080 * 15 13 12 17 17 Si 1.86799 * 119.99655 * 0.88153 * 15 13 12 18 18 H 1.48506 * 109.47178 * 92.24040 * 17 15 13 19 19 H 1.48505 * 109.47465 * 212.23873 * 17 15 13 20 20 H 1.48500 * 109.47202 * 332.24114 * 17 15 13 21 21 C 1.52997 * 117.49851 * 178.89483 * 12 11 10 22 22 C 1.52997 * 60.00063 * 107.48866 * 21 12 11 23 23 C 1.53004 * 109.47126 * 256.68549 * 3 2 1 24 24 H 1.08993 * 110.33167 * 300.69905 * 23 3 2 25 25 C 1.54476 * 110.37083 * 178.45113 * 23 3 2 26 26 C 1.54514 * 104.06104 * 217.18687 * 25 23 3 27 27 C 1.54478 * 104.06261 * 0.02562 * 26 25 23 28 28 O 1.44422 * 110.37283 * 62.94875 * 23 3 2 29 29 H 4.18742 * 15.03930 * 359.97438 * 4 2 1 30 30 H 0.97001 * 120.00214 * 264.99693 * 5 3 2 31 31 H 0.96997 * 120.00051 * 355.09152 * 10 8 6 32 32 H 1.09003 * 109.46863 * 65.84633 * 11 10 8 33 33 H 1.09003 * 109.47159 * 305.84933 * 11 10 8 34 34 H 0.96998 * 119.99965 * 179.97438 * 16 15 13 35 35 H 1.09003 * 117.49993 * 0.02562 * 21 12 11 36 36 H 1.08998 * 117.50181 * 214.97986 * 21 12 11 37 37 H 1.09004 * 117.49830 * 107.48972 * 22 21 12 38 38 H 1.09002 * 117.50079 * 252.50333 * 22 21 12 39 39 H 1.09006 * 110.51596 * 335.83132 * 25 23 3 40 40 H 1.08996 * 110.51231 * 98.40760 * 25 23 3 41 41 H 1.09004 * 110.50678 * 118.64750 * 26 25 23 42 42 H 1.08999 * 110.51464 * 241.21358 * 26 25 23 43 43 H 1.08999 * 110.37384 * 142.81173 * 27 26 25 44 44 H 1.09001 * 110.36562 * 265.14666 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7485 -0.7050 5 7 3.1349 -1.3222 -0.3965 6 6 3.2638 -1.6294 -1.7025 7 8 2.9752 -0.8101 -2.5498 8 6 3.7620 -2.9791 -2.1070 9 8 3.9612 -3.8298 -1.2649 10 7 3.9902 -3.2514 -3.4072 11 6 4.5796 -4.5356 -3.7941 12 6 4.8663 -4.5329 -5.2970 13 6 5.2585 -3.2006 -5.8818 14 1 4.5086 -2.5661 -6.3308 15 6 6.5746 -2.7914 -5.8436 16 7 6.9140 -1.6211 -6.3384 17 14 7.8755 -3.8993 -5.0890 18 1 8.4788 -4.7471 -6.1485 19 1 8.9319 -3.0657 -4.4608 20 1 7.2502 -4.7658 -4.0578 21 6 5.5117 -5.7844 -5.8952 22 6 4.0399 -5.4743 -6.1755 23 6 3.1559 0.3331 1.4038 24 1 2.7897 1.3104 1.7181 25 6 4.6999 0.3013 1.4365 26 6 5.0337 -0.2999 2.8202 27 6 3.6518 -0.5608 3.4594 28 8 2.7434 -0.6840 2.3424 29 1 -1.0500 -0.0008 0.0001 30 1 3.3660 -1.9770 0.2808 31 1 3.7641 -2.5971 -4.0866 32 1 3.8834 -5.3405 -3.5585 33 1 5.5099 -4.6880 -3.2469 34 1 7.8399 -1.3332 -6.3111 35 1 5.7316 -6.6099 -5.2182 36 1 6.2199 -5.6442 -6.7118 37 1 3.7799 -5.1299 -7.1765 38 1 3.2920 -6.0956 -5.6829 39 1 5.0859 -0.3353 0.6403 40 1 5.1047 1.3095 1.3482 41 1 5.5847 -1.2337 2.7080 42 1 5.6056 0.4103 3.4174 43 1 3.6698 -1.4840 4.0386 44 1 3.3613 0.2788 4.0909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327257570.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:48 Heat of formation + Delta-G solvation = -51.321724 kcal Electronic energy + Delta-G solvation = -27075.091107 eV Core-core repulsion = 23187.375426 eV Total energy + Delta-G solvation = -3887.715681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.88529 -40.66541 -39.64972 -38.68651 -36.80082 -35.09980 -34.25876 -33.62040 -33.02615 -31.13943 -28.94904 -27.67788 -27.06824 -24.72621 -23.31422 -23.08666 -22.02884 -21.50347 -21.15886 -19.75577 -19.37198 -18.36209 -18.02326 -17.35167 -17.20636 -16.91126 -16.86413 -16.55909 -16.12439 -15.89818 -15.58463 -15.28457 -14.85042 -14.73116 -14.62924 -14.52750 -14.16013 -13.95864 -13.76614 -13.09453 -12.84218 -12.70439 -12.62101 -12.58573 -12.22140 -12.15689 -12.01450 -11.66706 -11.59696 -11.53579 -11.20607 -11.06557 -10.86125 -10.74957 -10.65179 -10.63486 -10.40501 -9.95508 -8.29893 -6.38419 0.29900 1.10317 1.34114 1.38968 1.48477 1.79526 1.89508 2.12965 2.35937 2.73383 2.79462 3.06062 3.18768 3.22051 3.49957 3.58528 3.81023 3.96526 4.01225 4.11354 4.24011 4.32222 4.36678 4.38258 4.39760 4.57955 4.69368 4.76164 4.85227 4.89003 4.97680 4.98995 5.03344 5.03668 5.08160 5.15676 5.16848 5.35856 5.50312 5.68610 5.79305 5.91676 6.27991 6.39613 6.59737 6.70079 6.72026 6.94488 7.33064 8.84352 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.003438 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.012305 B = 8141.623716 C = 8615.379277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.240 4.240 3 C 0.258 3.742 4 H 0.120 0.880 5 N -0.677 5.677 6 C 0.512 3.488 7 O -0.536 6.536 8 C 0.498 3.502 9 O -0.552 6.552 10 N -0.666 5.666 11 C 0.154 3.846 12 C -0.046 4.046 13 C -0.485 4.485 14 H 0.041 0.959 15 C 0.033 3.967 16 N -0.939 5.939 17 Si 0.927 3.073 18 H -0.268 1.268 19 H -0.303 1.303 20 H -0.233 1.233 21 C -0.186 4.186 22 C -0.158 4.158 23 C 0.081 3.919 24 H 0.110 0.890 25 C -0.158 4.158 26 C -0.150 4.150 27 C 0.040 3.960 28 O -0.388 6.388 29 H 0.251 0.749 30 H 0.422 0.578 31 H 0.417 0.583 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.265 0.735 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.752 1.905 19.773 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.241 4.241 3 C 0.155 3.845 4 H 0.137 0.863 5 N -0.331 5.331 6 C 0.293 3.707 7 O -0.412 6.412 8 C 0.278 3.722 9 O -0.432 6.432 10 N -0.317 5.317 11 C 0.030 3.970 12 C -0.047 4.047 13 C -0.523 4.523 14 H 0.059 0.941 15 C -0.166 4.166 16 N -0.578 5.578 17 Si 0.753 3.247 18 H -0.193 1.193 19 H -0.230 1.230 20 H -0.156 1.156 21 C -0.224 4.224 22 C -0.195 4.195 23 C 0.023 3.977 24 H 0.127 0.873 25 C -0.195 4.195 26 C -0.188 4.188 27 C -0.036 4.036 28 O -0.307 6.307 29 H 0.267 0.733 30 H 0.260 0.740 31 H 0.255 0.745 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.802 1.853 19.675 20.900 hybrid contribution 0.858 0.098 -0.303 0.916 sum -5.944 1.951 19.372 20.357 Atomic orbital electron populations 1.25780 0.96773 0.96597 0.98902 1.23433 0.95075 1.03478 1.02085 1.18080 0.84354 0.85244 0.96856 0.86262 1.45628 1.64292 1.16966 1.06237 1.20241 0.78653 0.87882 0.83911 1.90783 1.49214 1.50108 1.51081 1.20118 0.80051 0.88210 0.83834 1.90685 1.53351 1.48259 1.50883 1.45935 1.58721 1.20264 1.06807 1.21195 0.97114 0.83586 0.95057 1.19498 1.03820 0.90980 0.90403 1.20269 0.93454 1.01065 1.37483 0.94063 1.25696 1.00632 0.95665 0.94579 1.70031 1.18800 1.21667 1.47283 0.86087 0.78786 0.79541 0.80325 1.19323 1.23039 1.15622 1.23022 0.96581 0.99237 1.03552 1.22976 0.93135 1.02472 1.00908 1.23293 0.94561 0.93495 0.86380 0.87289 1.23068 0.93873 1.03720 0.98873 1.22935 0.98118 1.02413 0.95336 1.23646 0.87572 1.03393 0.89022 1.89190 1.55367 1.55331 1.30860 0.73287 0.73992 0.74461 0.90532 0.92332 0.92616 0.87805 0.90373 0.90007 0.87552 0.91754 0.87993 0.90859 0.88215 0.88079 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 19.25 74.32 1.43 -2.22 16 2 C -0.24 -6.31 12.58 31.13 0.39 -5.92 16 3 C 0.26 6.45 2.30 43.19 0.10 6.55 16 4 H 0.12 3.07 7.58 -2.39 -0.02 3.05 16 5 N -0.68 -19.69 4.03 -452.55 -1.82 -21.52 16 6 C 0.51 18.57 7.83 87.27 0.68 19.26 16 7 O -0.54 -22.19 16.15 -3.23 -0.05 -22.24 16 8 C 0.50 19.41 7.88 87.27 0.69 20.10 16 9 O -0.55 -22.04 16.50 -3.25 -0.05 -22.10 16 10 N -0.67 -27.56 5.27 -464.40 -2.45 -30.01 16 11 C 0.15 6.12 5.57 86.38 0.48 6.61 16 12 C -0.05 -1.95 1.22 -52.93 -0.06 -2.01 16 13 C -0.49 -25.70 7.82 25.60 0.20 -25.50 16 14 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 15 C 0.03 1.85 5.47 84.65 0.46 2.32 16 16 N -0.94 -56.82 13.96 21.45 0.30 -56.52 16 17 Si 0.93 43.01 25.26 68.60 1.73 44.74 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 20 H -0.23 -9.89 5.19 99.48 0.52 -9.37 16 21 C -0.19 -6.96 7.58 30.59 0.23 -6.73 16 22 C -0.16 -5.66 9.88 30.59 0.30 -5.36 16 23 C 0.08 1.49 3.00 31.10 0.09 1.58 16 24 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 25 C -0.16 -2.55 6.53 31.61 0.21 -2.34 16 26 C -0.15 -1.92 7.09 31.61 0.22 -1.70 16 27 C 0.04 0.53 7.63 72.48 0.55 1.09 16 28 O -0.39 -7.95 10.50 -148.98 -1.56 -9.52 16 29 H 0.25 3.41 7.80 -4.42 -0.03 3.37 16 30 H 0.42 11.71 7.61 -92.71 -0.71 11.00 16 31 H 0.42 18.63 6.79 -92.71 -0.63 18.00 16 32 H 0.08 2.70 7.89 -2.39 -0.02 2.68 16 33 H 0.06 2.43 6.38 -2.39 -0.02 2.42 16 34 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 35 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.08 3.12 7.30 -2.39 -0.02 3.10 16 37 H 0.08 3.04 8.14 -2.38 -0.02 3.02 16 38 H 0.11 3.17 8.04 -2.39 -0.02 3.15 16 39 H 0.06 1.33 7.13 -2.38 -0.02 1.31 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -69.49 370.72 1.58 -67.91 By element: Atomic # 1 Polarization: 44.03 SS G_CDS: -0.50 Total: 43.53 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 5.98 Total: 5.71 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -3.97 Total: -108.04 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -1.67 Total: -53.85 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.73 Total: 44.74 kcal Total: -69.49 1.58 -67.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327257570.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.591 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds