Wall clock time and date at job start Tue Mar 31 2020 12:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47540 * 117.24832 * 3 2 1 5 5 N 1.46503 * 109.47420 * 237.24649 * 3 2 1 6 6 C 1.34779 * 120.00021 * 275.00514 * 5 3 2 7 7 O 1.21351 * 119.99970 * 359.97438 * 6 5 3 8 8 C 1.49449 * 120.00143 * 179.97438 * 6 5 3 9 9 O 1.21346 * 120.00264 * 354.86643 * 8 6 5 10 10 N 1.34783 * 119.99905 * 174.85760 * 8 6 5 11 11 C 1.46496 * 119.99663 * 184.87705 * 10 8 6 12 12 C 1.53005 * 109.46745 * 185.62900 * 11 10 8 13 13 C 1.50694 * 115.55341 * 32.55854 * 12 11 10 14 14 H 1.08010 * 119.99892 * 267.33458 * 13 12 11 15 15 C 1.37879 * 120.00304 * 87.33065 * 13 12 11 16 16 N 1.31509 * 119.99794 * 178.80054 * 15 13 12 17 17 Si 1.86797 * 119.99707 * 358.80486 * 15 13 12 18 18 H 1.48495 * 109.47220 * 91.24684 * 17 15 13 19 19 H 1.48501 * 109.47009 * 211.24847 * 17 15 13 20 20 H 1.48496 * 109.47284 * 331.24576 * 17 15 13 21 21 C 1.53006 * 117.49429 * 246.85020 * 12 11 10 22 22 C 1.53004 * 117.49909 * 178.22862 * 12 11 10 23 23 C 1.53003 * 109.47403 * 357.24106 * 3 2 1 24 24 H 1.09006 * 109.86046 * 64.30112 * 23 3 2 25 25 C 1.54094 * 109.87924 * 185.30424 * 23 3 2 26 26 C 1.54817 * 104.18518 * 121.45925 * 25 23 3 27 27 C 1.54994 * 102.09168 * 20.87948 * 26 25 23 28 28 O 1.43743 * 109.88075 * 303.29824 * 23 3 2 29 29 H 4.18748 * 15.03902 * 0.02562 * 4 2 1 30 30 H 0.96998 * 120.00609 * 94.99151 * 5 3 2 31 31 H 0.96995 * 120.00254 * 4.88145 * 10 8 6 32 32 H 1.09005 * 109.47521 * 305.62230 * 11 10 8 33 33 H 1.08991 * 109.47399 * 65.62914 * 11 10 8 34 34 H 0.97008 * 120.00090 * 180.02562 * 16 15 13 35 35 H 1.08996 * 117.49973 * 359.97438 * 21 12 11 36 36 H 1.08997 * 117.49683 * 145.02530 * 21 12 11 37 37 H 1.08995 * 117.50096 * 214.97532 * 22 12 11 38 38 H 1.09005 * 117.49856 * 359.97438 * 22 12 11 39 39 H 1.09002 * 110.48681 * 240.12875 * 25 23 3 40 40 H 1.08991 * 110.49301 * 2.64973 * 25 23 3 41 41 H 1.08996 * 110.90740 * 139.07609 * 26 25 23 42 42 H 1.08996 * 110.90718 * 262.68178 * 26 25 23 43 43 H 1.09000 * 110.61972 * 81.47718 * 27 26 25 44 44 H 1.09000 * 110.61824 * 204.47413 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0091 0.4713 -0.9136 5 7 3.1340 0.7481 1.1616 6 6 3.2621 2.0882 1.0954 7 8 2.9735 2.6755 0.0735 8 6 3.7594 2.8508 2.2805 9 8 3.9593 2.2771 3.3310 10 7 3.9861 4.1758 2.1826 11 6 4.5740 4.9036 3.3099 12 6 4.5954 6.4007 2.9949 13 6 3.4588 6.9018 2.1418 14 1 3.5706 6.9526 1.0687 15 6 2.2760 7.2953 2.7310 16 7 1.2925 7.7547 1.9885 17 14 2.0706 7.1759 4.5838 18 1 2.4896 8.4547 5.2117 19 1 0.6462 6.9088 4.9077 20 1 2.9126 6.0694 5.1049 21 6 5.9618 7.0649 2.8132 22 6 5.1380 7.3417 4.0725 23 6 3.1566 -1.4399 0.0694 24 1 2.8612 -1.9813 -0.8294 25 6 4.6917 -1.4458 0.2039 26 6 4.9539 -2.2085 1.5253 27 6 3.6367 -3.0048 1.7075 28 8 2.6202 -2.0932 1.2321 29 1 -1.0501 0.0002 0.0006 30 1 3.3648 0.2787 1.9785 31 1 3.7600 4.6475 1.3658 32 1 3.9778 4.7293 4.2056 33 1 5.5923 4.5530 3.4774 34 1 0.4604 8.0320 2.4031 35 1 6.8454 6.4354 2.9185 36 1 6.0387 7.8644 2.0764 37 1 4.6730 8.3233 4.1640 38 1 5.4793 6.8942 5.0060 39 1 5.1463 -1.9708 -0.6363 40 1 5.0731 -0.4267 0.2671 41 1 5.8047 -2.8821 1.4234 42 1 5.1061 -1.5142 2.3516 43 1 3.6495 -3.9115 1.1026 44 1 3.4759 -3.2455 2.7583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327257571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:54 Heat of formation + Delta-G solvation = -28.122134 kcal Electronic energy + Delta-G solvation = -27107.800797 eV Core-core repulsion = 23221.091125 eV Total energy + Delta-G solvation = -3886.709671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.65824 -39.65899 -38.21772 -37.03461 -35.61484 -33.55025 -32.64080 -32.19776 -32.18348 -30.30235 -27.42717 -26.29695 -25.46000 -23.36963 -22.40934 -21.73149 -21.31868 -20.06059 -19.45529 -18.57129 -18.06737 -17.00686 -16.54969 -16.27361 -16.15603 -15.56698 -15.52696 -15.03719 -14.87140 -14.66238 -14.18025 -13.95284 -13.84617 -13.44877 -13.06595 -12.99152 -12.78237 -12.42981 -12.34352 -12.08813 -11.84874 -11.55095 -11.34856 -11.17226 -11.11366 -10.72000 -10.58884 -10.53477 -10.34370 -10.24423 -9.97008 -9.68447 -9.42777 -9.32748 -9.11932 -8.76499 -8.63857 -8.29881 -6.19109 -4.25763 1.77494 2.33720 2.83551 3.13326 3.26307 3.37086 3.40221 3.46060 3.60200 4.05665 4.14502 4.23742 4.36803 4.53727 4.55401 4.73189 4.78917 4.90765 4.96889 5.06383 5.13936 5.23876 5.34286 5.44445 5.47632 5.64669 5.65757 5.74585 5.90862 5.92040 6.03468 6.16874 6.20902 6.39650 6.43092 6.52072 6.65235 6.78875 6.98185 7.04996 7.23864 7.63047 7.63589 7.85546 8.16581 8.36443 8.55169 8.81768 9.43272 10.91399 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.003388 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.685089 B = 8261.297515 C = 8935.316767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.199 4.199 3 C 0.261 3.739 4 H 0.123 0.877 5 N -0.696 5.696 6 C 0.510 3.490 7 O -0.506 6.506 8 C 0.497 3.503 9 O -0.545 6.545 10 N -0.657 5.657 11 C 0.147 3.853 12 C -0.017 4.017 13 C -0.499 4.499 14 H 0.082 0.918 15 C 0.085 3.915 16 N -0.887 5.887 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.294 1.294 20 H -0.256 1.256 21 C -0.177 4.177 22 C -0.194 4.194 23 C 0.076 3.924 24 H 0.089 0.911 25 C -0.155 4.155 26 C -0.157 4.157 27 C 0.043 3.957 28 O -0.364 6.364 29 H 0.218 0.782 30 H 0.416 0.584 31 H 0.424 0.576 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.267 0.733 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.532 -20.232 -2.566 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.200 4.200 3 C 0.156 3.844 4 H 0.140 0.860 5 N -0.351 5.351 6 C 0.291 3.709 7 O -0.380 6.380 8 C 0.276 3.724 9 O -0.424 6.424 10 N -0.309 5.309 11 C 0.024 3.976 12 C -0.018 4.018 13 C -0.536 4.536 14 H 0.100 0.900 15 C -0.119 4.119 16 N -0.523 5.523 17 Si 0.705 3.295 18 H -0.203 1.203 19 H -0.221 1.221 20 H -0.180 1.180 21 C -0.214 4.214 22 C -0.232 4.232 23 C 0.017 3.983 24 H 0.107 0.893 25 C -0.193 4.193 26 C -0.194 4.194 27 C -0.033 4.033 28 O -0.283 6.283 29 H 0.235 0.765 30 H 0.254 0.746 31 H 0.264 0.736 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.080 0.920 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.107 -20.038 -2.505 21.097 hybrid contribution -0.402 0.062 0.974 1.055 sum 5.705 -19.975 -1.531 20.830 Atomic orbital electron populations 1.24903 0.95860 0.99505 0.98857 1.22976 0.94265 1.01148 1.01599 1.18003 0.84396 0.90921 0.91071 0.85953 1.45692 1.65919 1.06384 1.17153 1.20511 0.78649 0.82888 0.88872 1.90796 1.47397 1.68470 1.31295 1.19875 0.80435 0.84047 0.88029 1.90697 1.52925 1.69518 1.29280 1.45894 1.58682 1.06210 1.20155 1.21240 0.96094 0.92114 0.88177 1.19593 0.94643 0.88758 0.98852 1.20160 0.95284 1.43943 0.94215 0.90041 1.24970 0.95389 0.93445 0.98104 1.69888 1.04918 1.41577 1.35919 0.86896 0.77071 0.79367 0.86146 1.20316 1.22050 1.18031 1.22926 0.94451 1.03976 1.00067 1.22964 1.05829 1.01903 0.92503 1.23032 0.93127 0.91229 0.90890 0.89316 1.23034 0.94562 1.02963 0.98729 1.23167 0.98540 0.99721 0.98008 1.23647 0.86501 0.92650 1.00508 1.89042 1.38795 1.56582 1.43840 0.76523 0.74642 0.73558 0.91296 0.92859 0.92363 0.90783 0.89312 0.89144 0.90705 0.89921 0.89457 0.89894 0.89922 0.92020 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 19.25 29.55 0.57 -1.71 16 2 C -0.20 -2.83 12.41 -37.12 -0.46 -3.29 16 3 C 0.26 3.21 2.22 -70.72 -0.16 3.06 16 4 H 0.12 1.46 7.58 -51.93 -0.39 1.06 16 5 N -0.70 -9.83 4.07 -56.98 -0.23 -10.06 16 6 C 0.51 8.95 7.83 -11.58 -0.09 8.86 16 7 O -0.51 -10.05 16.15 5.50 0.09 -9.96 16 8 C 0.50 9.63 7.88 -11.58 -0.09 9.54 16 9 O -0.54 -11.05 16.46 5.50 0.09 -10.96 16 10 N -0.66 -13.53 5.28 -60.73 -0.32 -13.85 16 11 C 0.15 3.04 5.63 -4.04 -0.02 3.02 16 12 C -0.02 -0.38 1.24 -155.66 -0.19 -0.57 16 13 C -0.50 -13.06 7.79 -34.44 -0.27 -13.33 16 14 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 15 C 0.09 2.36 5.47 -17.82 -0.10 2.26 16 16 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 17 Si 0.88 21.43 25.16 -169.99 -4.28 17.15 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 H -0.26 -5.98 5.30 56.52 0.30 -5.68 16 21 C -0.18 -3.37 9.88 -26.72 -0.26 -3.63 16 22 C -0.19 -3.92 7.60 -26.73 -0.20 -4.12 16 23 C 0.08 0.71 3.18 -26.16 -0.08 0.62 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 25 C -0.16 -1.15 6.29 -25.20 -0.16 -1.31 16 26 C -0.16 -1.07 7.16 -24.72 -0.18 -1.24 16 27 C 0.04 0.32 7.72 38.21 0.29 0.62 16 28 O -0.36 -3.92 10.42 -35.23 -0.37 -4.28 16 29 H 0.22 2.08 7.80 -54.09 -0.42 1.66 16 30 H 0.42 5.60 7.74 -40.82 -0.32 5.28 16 31 H 0.42 9.18 6.76 -40.82 -0.28 8.91 16 32 H 0.07 1.53 6.39 -51.93 -0.33 1.19 16 33 H 0.05 0.99 7.89 -51.93 -0.41 0.58 16 34 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 35 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 36 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 37 H 0.09 1.92 7.22 -51.93 -0.37 1.55 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.74 7.15 -51.93 -0.37 0.37 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.61 15.07 5.59 5.59 Total: -1.00 -32.16 370.61 -6.41 -38.58 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -6.35 Total: 14.54 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.40 Total: -1.22 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.22 Total: -49.42 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.19 Total: -25.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.28 Total: 17.15 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.16 -6.41 -38.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327257571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.454 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds