Wall clock time and date at job start Tue Mar 31 2020 12:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 H 1.09004 * 109.47540 * 117.24832 * 3 2 1 5 5 N 1.46503 * 109.47420 * 237.24649 * 3 2 1 6 6 C 1.34779 * 120.00021 * 275.00514 * 5 3 2 7 7 O 1.21351 * 119.99970 * 359.97438 * 6 5 3 8 8 C 1.49449 * 120.00143 * 179.97438 * 6 5 3 9 9 O 1.21346 * 120.00264 * 354.86643 * 8 6 5 10 10 N 1.34783 * 119.99905 * 174.85760 * 8 6 5 11 11 C 1.46496 * 119.99663 * 184.87705 * 10 8 6 12 12 C 1.53005 * 109.46745 * 185.62900 * 11 10 8 13 13 C 1.50694 * 115.55341 * 32.55854 * 12 11 10 14 14 H 1.08010 * 119.99892 * 267.33458 * 13 12 11 15 15 C 1.37879 * 120.00304 * 87.33065 * 13 12 11 16 16 N 1.31509 * 119.99794 * 178.80054 * 15 13 12 17 17 Si 1.86797 * 119.99707 * 358.80486 * 15 13 12 18 18 H 1.48495 * 109.47220 * 91.24684 * 17 15 13 19 19 H 1.48501 * 109.47009 * 211.24847 * 17 15 13 20 20 H 1.48496 * 109.47284 * 331.24576 * 17 15 13 21 21 C 1.53006 * 117.49429 * 246.85020 * 12 11 10 22 22 C 1.53004 * 117.49909 * 178.22862 * 12 11 10 23 23 C 1.53003 * 109.47403 * 357.24106 * 3 2 1 24 24 H 1.09006 * 109.86046 * 64.30112 * 23 3 2 25 25 C 1.54094 * 109.87924 * 185.30424 * 23 3 2 26 26 C 1.54817 * 104.18518 * 121.45925 * 25 23 3 27 27 C 1.54994 * 102.09168 * 20.87948 * 26 25 23 28 28 O 1.43743 * 109.88075 * 303.29824 * 23 3 2 29 29 H 4.18748 * 15.03902 * 0.02562 * 4 2 1 30 30 H 0.96998 * 120.00609 * 94.99151 * 5 3 2 31 31 H 0.96995 * 120.00254 * 4.88145 * 10 8 6 32 32 H 1.09005 * 109.47521 * 305.62230 * 11 10 8 33 33 H 1.08991 * 109.47399 * 65.62914 * 11 10 8 34 34 H 0.97008 * 120.00090 * 180.02562 * 16 15 13 35 35 H 1.08996 * 117.49973 * 359.97438 * 21 12 11 36 36 H 1.08997 * 117.49683 * 145.02530 * 21 12 11 37 37 H 1.08995 * 117.50096 * 214.97532 * 22 12 11 38 38 H 1.09005 * 117.49856 * 359.97438 * 22 12 11 39 39 H 1.09002 * 110.48681 * 240.12875 * 25 23 3 40 40 H 1.08991 * 110.49301 * 2.64973 * 25 23 3 41 41 H 1.08996 * 110.90740 * 139.07609 * 26 25 23 42 42 H 1.08996 * 110.90718 * 262.68178 * 26 25 23 43 43 H 1.09000 * 110.61972 * 81.47718 * 27 26 25 44 44 H 1.09000 * 110.61824 * 204.47413 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0091 0.4713 -0.9136 5 7 3.1340 0.7481 1.1616 6 6 3.2621 2.0882 1.0954 7 8 2.9735 2.6755 0.0735 8 6 3.7594 2.8508 2.2805 9 8 3.9593 2.2771 3.3310 10 7 3.9861 4.1758 2.1826 11 6 4.5740 4.9036 3.3099 12 6 4.5954 6.4007 2.9949 13 6 3.4588 6.9018 2.1418 14 1 3.5706 6.9526 1.0687 15 6 2.2760 7.2953 2.7310 16 7 1.2925 7.7547 1.9885 17 14 2.0706 7.1759 4.5838 18 1 2.4896 8.4547 5.2117 19 1 0.6462 6.9088 4.9077 20 1 2.9126 6.0694 5.1049 21 6 5.9618 7.0649 2.8132 22 6 5.1380 7.3417 4.0725 23 6 3.1566 -1.4399 0.0694 24 1 2.8612 -1.9813 -0.8294 25 6 4.6917 -1.4458 0.2039 26 6 4.9539 -2.2085 1.5253 27 6 3.6367 -3.0048 1.7075 28 8 2.6202 -2.0932 1.2321 29 1 -1.0501 0.0002 0.0006 30 1 3.3648 0.2787 1.9785 31 1 3.7600 4.6475 1.3658 32 1 3.9778 4.7293 4.2056 33 1 5.5923 4.5530 3.4774 34 1 0.4604 8.0320 2.4031 35 1 6.8454 6.4354 2.9185 36 1 6.0387 7.8644 2.0764 37 1 4.6730 8.3233 4.1640 38 1 5.4793 6.8942 5.0060 39 1 5.1463 -1.9708 -0.6363 40 1 5.0731 -0.4267 0.2671 41 1 5.8047 -2.8821 1.4234 42 1 5.1061 -1.5142 2.3516 43 1 3.6495 -3.9115 1.1026 44 1 3.4759 -3.2455 2.7583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327257571.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:54 Heat of formation + Delta-G solvation = -51.660552 kcal Electronic energy + Delta-G solvation = -27108.821499 eV Core-core repulsion = 23221.091125 eV Total energy + Delta-G solvation = -3887.730374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90541 -40.68513 -39.63406 -38.68540 -36.75265 -35.09797 -34.26774 -33.65712 -32.97806 -31.15950 -28.95047 -27.67794 -27.02564 -24.67544 -23.31495 -23.09887 -22.05710 -21.49765 -21.15902 -19.74624 -19.40940 -18.37579 -18.01776 -17.34548 -17.18524 -17.09306 -16.75812 -16.49965 -16.11443 -15.90189 -15.54918 -15.26811 -14.83268 -14.75283 -14.51877 -14.43602 -14.16948 -14.00848 -13.88322 -13.11589 -12.84438 -12.67709 -12.62556 -12.53708 -12.15378 -12.11405 -12.01014 -11.70767 -11.65490 -11.56545 -11.22813 -11.05543 -10.83846 -10.73418 -10.67020 -10.55930 -10.43801 -9.93891 -8.31929 -6.39959 0.29980 1.09370 1.31939 1.37659 1.46509 1.80457 1.91628 2.09954 2.34102 2.73919 2.81188 3.04376 3.19125 3.26381 3.50263 3.56762 3.81359 3.96061 4.01271 4.10687 4.24212 4.33438 4.39363 4.39676 4.46617 4.57161 4.76474 4.77077 4.85264 4.89437 4.96231 4.98574 5.04973 5.06227 5.09553 5.17644 5.20428 5.36231 5.51157 5.67805 5.85376 5.93800 6.26294 6.39668 6.59542 6.70008 6.70937 6.94825 7.31654 8.82355 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.003388 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.685089 B = 8261.297515 C = 8935.316767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.235 4.235 3 C 0.253 3.747 4 H 0.124 0.876 5 N -0.677 5.677 6 C 0.513 3.487 7 O -0.536 6.536 8 C 0.497 3.503 9 O -0.552 6.552 10 N -0.667 5.667 11 C 0.153 3.847 12 C -0.047 4.047 13 C -0.484 4.484 14 H 0.043 0.957 15 C 0.032 3.968 16 N -0.940 5.940 17 Si 0.927 3.073 18 H -0.265 1.265 19 H -0.306 1.306 20 H -0.235 1.235 21 C -0.154 4.154 22 C -0.189 4.189 23 C 0.081 3.919 24 H 0.107 0.893 25 C -0.152 4.152 26 C -0.153 4.153 27 C 0.039 3.961 28 O -0.392 6.392 29 H 0.245 0.755 30 H 0.420 0.580 31 H 0.417 0.583 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.264 0.736 35 H 0.109 0.891 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.456 -22.253 -1.378 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.236 4.236 3 C 0.150 3.850 4 H 0.141 0.859 5 N -0.330 5.330 6 C 0.294 3.706 7 O -0.412 6.412 8 C 0.277 3.723 9 O -0.432 6.432 10 N -0.318 5.318 11 C 0.030 3.970 12 C -0.048 4.048 13 C -0.522 4.522 14 H 0.061 0.939 15 C -0.167 4.167 16 N -0.579 5.579 17 Si 0.753 3.247 18 H -0.190 1.190 19 H -0.234 1.234 20 H -0.159 1.159 21 C -0.191 4.191 22 C -0.227 4.227 23 C 0.023 3.977 24 H 0.125 0.875 25 C -0.190 4.190 26 C -0.191 4.191 27 C -0.037 4.037 28 O -0.311 6.311 29 H 0.262 0.738 30 H 0.259 0.741 31 H 0.256 0.744 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.071 -22.105 -1.290 23.568 hybrid contribution -0.990 0.633 0.524 1.287 sum 7.081 -21.471 -0.766 22.622 Atomic orbital electron populations 1.25756 0.96931 0.98741 0.97756 1.23576 0.95354 1.02005 1.02644 1.18340 0.83881 0.92703 0.90090 0.85863 1.45639 1.64264 1.05169 1.17957 1.20231 0.78701 0.83819 0.87881 1.90788 1.49158 1.69207 1.32027 1.20137 0.79896 0.83752 0.88466 1.90682 1.53251 1.69584 1.29719 1.45948 1.59171 1.06750 1.19901 1.21199 0.97342 0.90980 0.87482 1.19501 0.95029 0.89832 1.00436 1.20293 0.96574 1.42197 0.93125 0.93905 1.25713 0.95295 0.93661 1.02076 1.70030 1.05718 1.44397 1.37746 0.86087 0.76517 0.80476 0.81631 1.18968 1.23416 1.15858 1.22984 0.93960 1.03210 0.98970 1.23023 1.05240 1.00607 0.93795 1.23082 0.94192 0.89116 0.91335 0.87537 1.23052 0.93106 1.02719 1.00112 1.23161 0.99087 0.99700 0.97114 1.23842 0.85956 0.92792 1.01099 1.89011 1.40336 1.57390 1.44379 0.73838 0.74146 0.74441 0.92666 0.90015 0.92668 0.87241 0.90019 0.90541 0.87753 0.87451 0.90746 0.87654 0.91193 0.90222 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.48 19.25 74.32 1.43 -3.05 16 2 C -0.23 -6.61 12.41 31.12 0.39 -6.22 16 3 C 0.25 6.15 2.22 43.19 0.10 6.25 16 4 H 0.12 2.94 7.58 -2.39 -0.02 2.92 16 5 N -0.68 -18.91 4.07 -452.53 -1.84 -20.75 16 6 C 0.51 18.12 7.83 87.27 0.68 18.81 16 7 O -0.54 -21.77 16.15 -3.25 -0.05 -21.82 16 8 C 0.50 19.09 7.88 87.27 0.69 19.78 16 9 O -0.55 -21.80 16.46 -3.23 -0.05 -21.86 16 10 N -0.67 -27.27 5.28 -464.41 -2.45 -29.72 16 11 C 0.15 6.04 5.63 86.38 0.49 6.52 16 12 C -0.05 -1.98 1.24 -52.92 -0.07 -2.05 16 13 C -0.48 -25.80 7.79 25.60 0.20 -25.60 16 14 H 0.04 2.55 8.06 -2.91 -0.02 2.53 16 15 C 0.03 1.78 5.47 84.66 0.46 2.24 16 16 N -0.94 -57.83 13.96 21.45 0.30 -57.53 16 17 Si 0.93 44.05 25.16 68.60 1.73 45.77 16 18 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.31 -15.11 7.11 99.48 0.71 -14.40 16 20 H -0.24 -10.30 5.30 99.48 0.53 -9.78 16 21 C -0.15 -5.42 9.88 30.60 0.30 -5.12 16 22 C -0.19 -7.05 7.60 30.60 0.23 -6.82 16 23 C 0.08 1.39 3.18 30.97 0.10 1.49 16 24 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 25 C -0.15 -1.94 6.29 31.58 0.20 -1.74 16 26 C -0.15 -1.73 7.16 31.90 0.23 -1.51 16 27 C 0.04 0.50 7.72 72.66 0.56 1.06 16 28 O -0.39 -7.89 10.42 -148.98 -1.55 -9.44 16 29 H 0.25 4.36 7.80 -4.41 -0.03 4.32 16 30 H 0.42 11.07 7.74 -92.71 -0.72 10.35 16 31 H 0.42 18.48 6.76 -92.71 -0.63 17.85 16 32 H 0.06 2.32 6.39 -2.38 -0.02 2.30 16 33 H 0.08 2.75 7.89 -2.39 -0.02 2.73 16 34 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 35 H 0.11 3.11 8.04 -2.39 -0.02 3.09 16 36 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.08 3.08 7.22 -2.39 -0.02 3.06 16 38 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.16 7.15 -2.39 -0.02 1.14 16 41 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -71.21 370.61 1.57 -69.64 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.49 Total: 41.67 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 5.99 Total: 4.04 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -3.99 Total: -108.00 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -1.66 Total: -53.12 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.73 Total: 45.77 kcal Total: -71.21 1.57 -69.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327257571.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.976 kcal (2) G-P(sol) polarization free energy of solvation -71.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds