Wall clock time and date at job start Tue Mar 31 2020 12:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47046 * 2 1 4 4 H 1.08998 * 109.46854 * 54.99481 * 3 2 1 5 5 N 1.46494 * 109.46846 * 294.99875 * 3 2 1 6 6 C 1.34781 * 120.00333 * 84.99931 * 5 3 2 7 7 O 1.21280 * 119.99869 * 359.97438 * 6 5 3 8 8 C 1.50693 * 120.00012 * 179.97438 * 6 5 3 9 9 C 1.50706 * 109.46988 * 180.02562 * 8 6 5 10 10 C 1.38326 * 119.96331 * 269.72154 * 9 8 6 11 11 C 1.38280 * 120.13525 * 179.76350 * 10 9 8 12 12 C 1.38122 * 120.07106 * 0.51439 * 11 10 9 13 13 C 1.38854 * 119.92587 * 359.74407 * 12 11 10 14 14 O 1.35753 * 120.06504 * 179.97438 * 13 12 11 15 15 C 1.34825 * 116.99984 * 354.48296 * 14 13 12 16 16 H 1.08000 * 120.00124 * 5.06945 * 15 14 13 17 17 C 1.38658 * 120.00022 * 185.05893 * 15 14 13 18 18 N 1.31555 * 120.00031 * 180.02562 * 17 15 14 19 19 Si 1.86794 * 119.99981 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47284 * 89.99927 * 19 17 15 21 21 H 1.48505 * 109.47411 * 210.00075 * 19 17 15 22 22 H 1.48500 * 109.47663 * 330.00108 * 19 17 15 23 23 C 1.38075 * 119.96635 * 89.99995 * 9 8 6 24 24 C 1.50699 * 109.47033 * 174.99720 * 3 2 1 25 25 O 1.21282 * 119.99871 * 120.00234 * 24 3 2 26 26 N 1.34780 * 120.00130 * 299.99802 * 24 3 2 27 27 C 1.46498 * 119.99972 * 180.02562 * 26 24 3 28 28 H 1.08997 * 109.47549 * 299.99903 * 1 2 3 29 29 H 1.09001 * 109.47031 * 60.00270 * 1 2 3 30 30 H 1.09010 * 109.46883 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47595 * 239.99627 * 2 1 3 32 32 H 1.09001 * 109.47021 * 119.99173 * 2 1 3 33 33 H 0.97003 * 120.00320 * 264.99686 * 5 3 2 34 34 H 1.09000 * 109.47367 * 299.99819 * 8 6 5 35 35 H 1.09000 * 109.47111 * 60.00069 * 8 6 5 36 36 H 1.08003 * 119.92746 * 0.02562 * 10 9 8 37 37 H 1.08004 * 119.96257 * 180.25518 * 11 10 9 38 38 H 1.07990 * 120.03419 * 179.71693 * 12 11 10 39 39 H 0.96999 * 120.00246 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.03415 * 359.95658 * 23 9 8 41 41 H 0.96998 * 119.99514 * 359.97438 * 26 24 3 42 42 H 1.08998 * 109.47219 * 180.02562 * 27 26 24 43 43 H 1.08995 * 109.46794 * 300.00069 * 27 26 24 44 44 H 1.08997 * 109.47440 * 60.00014 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0974 -1.2518 6 6 0.4351 2.6643 -1.3670 7 8 -0.3397 2.6319 -0.4345 8 6 0.0367 3.3385 -2.6546 9 6 -1.3609 3.8868 -2.5229 10 6 -2.4461 3.1038 -2.8731 11 6 -3.7302 3.6016 -2.7491 12 6 -3.9325 4.8867 -2.2850 13 6 -2.8449 5.6770 -1.9378 14 8 -3.0404 6.9407 -1.4819 15 6 -4.3049 7.4083 -1.4976 16 1 -5.1177 6.7575 -1.7842 17 6 -4.5617 8.7246 -1.1455 18 7 -5.7956 9.1807 -1.1603 19 14 -3.1558 9.8502 -0.6501 20 1 -2.6235 10.5369 -1.8544 21 1 -3.6492 10.8616 0.3189 22 1 -2.0767 9.0472 -0.0209 23 6 -1.5565 5.1723 -2.0584 24 6 3.5419 1.4444 0.1239 25 8 4.2216 1.9436 -0.7477 26 7 4.1297 0.8912 1.2033 27 6 5.5897 0.8935 1.3240 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5137 0.8901 33 1 2.2719 2.1232 -1.9978 34 1 0.7280 4.1540 -2.8668 35 1 0.0681 2.6144 -3.4687 36 1 -2.2902 2.1000 -3.2401 37 1 -4.5757 2.9863 -3.0194 38 1 -4.9353 5.2765 -2.1928 39 1 -5.9754 10.1014 -0.9136 40 1 -0.7085 5.7845 -1.7887 41 1 3.5860 0.4923 1.9005 42 1 5.8781 0.4058 2.2551 43 1 6.0246 0.3548 0.4822 44 1 5.9527 1.9212 1.3242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361409391.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:56 Heat of formation + Delta-G solvation = -102.715815 kcal Electronic energy + Delta-G solvation = -26416.864249 eV Core-core repulsion = 22526.919953 eV Total energy + Delta-G solvation = -3889.944296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -41.63935 -40.91320 -40.14221 -38.33775 -36.37749 -35.78649 -34.48111 -33.85957 -32.89631 -31.07169 -29.65846 -28.37316 -27.19734 -26.36662 -23.48013 -23.12534 -22.58103 -21.47240 -21.29506 -19.68906 -19.21742 -18.65028 -17.88177 -17.21225 -16.98259 -16.84330 -16.54107 -16.18222 -16.03049 -15.74520 -15.62835 -15.23035 -14.93157 -14.76053 -14.54878 -14.26802 -14.07616 -14.00828 -13.90051 -13.40308 -13.12692 -13.04629 -13.01101 -12.78218 -12.54663 -12.44935 -12.41148 -12.32523 -11.93083 -11.84585 -11.30661 -11.06409 -10.94034 -10.86128 -10.22388 -10.06210 -9.65797 -9.05234 -8.50300 -6.22698 0.49558 0.71585 1.29120 1.33624 1.42681 1.50440 1.66667 1.89014 2.27498 2.44002 2.79317 3.05645 3.15820 3.55872 3.77404 3.88584 4.03056 4.08809 4.11802 4.30930 4.38290 4.43963 4.47098 4.56410 4.59426 4.63107 4.66229 4.71970 4.85527 4.95718 4.98170 5.02648 5.13563 5.25700 5.33716 5.38808 5.41043 5.50601 5.66553 5.74109 5.77679 5.92273 6.25790 6.39853 6.54155 6.84227 7.08285 7.29010 7.59857 8.61574 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016891 B = 0.002758 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.307810 B =10150.752327 C =11150.086596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.126 3.874 4 H 0.104 0.896 5 N -0.709 5.709 6 C 0.520 3.480 7 O -0.557 6.557 8 C -0.092 4.092 9 C -0.024 4.024 10 C -0.168 4.168 11 C -0.077 4.077 12 C -0.240 4.240 13 C 0.119 3.881 14 O -0.248 6.248 15 C -0.399 4.399 16 H 0.081 0.919 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.970 3.030 20 H -0.263 1.263 21 H -0.266 1.266 22 H -0.268 1.268 23 C -0.182 4.182 24 C 0.512 3.488 25 O -0.571 6.571 26 N -0.717 5.717 27 C 0.083 3.917 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.416 0.584 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.285 0.715 40 H 0.118 0.882 41 H 0.420 0.580 42 H 0.112 0.888 43 H 0.056 0.944 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.390 -22.936 2.157 32.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.156 4.156 3 C 0.018 3.982 4 H 0.122 0.878 5 N -0.364 5.364 6 C 0.308 3.692 7 O -0.434 6.434 8 C -0.132 4.132 9 C -0.025 4.025 10 C -0.186 4.186 11 C -0.095 4.095 12 C -0.259 4.259 13 C 0.070 3.930 14 O -0.156 6.156 15 C -0.475 4.475 16 H 0.098 0.902 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.793 3.207 20 H -0.188 1.188 21 H -0.190 1.190 22 H -0.192 1.192 23 C -0.201 4.201 24 C 0.298 3.702 25 O -0.451 6.451 26 N -0.369 5.369 27 C -0.061 4.061 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.254 0.746 34 H 0.138 0.862 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.256 0.744 42 H 0.130 0.870 43 H 0.075 0.925 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 22.373 -22.278 2.350 31.661 hybrid contribution -0.383 0.872 0.310 1.002 sum 21.990 -21.406 2.660 30.804 Atomic orbital electron populations 1.21755 0.95085 1.01264 1.01973 1.21878 0.96586 0.92701 1.04424 1.20916 0.90672 0.96763 0.89874 0.87800 1.45669 1.16590 1.57834 1.16329 1.20738 0.81060 0.77472 0.89962 1.90771 1.52053 1.59040 1.41582 1.20686 0.93431 1.02684 0.96371 1.19150 0.95418 0.91656 0.96274 1.20990 0.91273 1.00674 1.05651 1.21109 0.98450 0.93462 0.96444 1.21313 0.98345 0.97100 1.09148 1.19581 0.94992 0.84702 0.93689 1.83509 1.30164 1.26727 1.75213 1.20716 0.81739 0.97361 1.47686 0.90196 1.25266 0.99722 0.97562 0.96312 1.69727 1.20191 1.17944 1.48609 0.85227 0.78572 0.77882 0.79064 1.18777 1.19015 1.19246 1.20256 0.93431 0.97817 1.08596 1.20727 0.90123 0.77263 0.82099 1.90699 1.65969 1.46698 1.41683 1.45693 1.09245 1.59373 1.22603 1.21719 0.78438 1.02120 1.03781 0.93656 0.93870 0.91762 0.90427 0.88060 0.74619 0.86192 0.84081 0.83340 0.84146 0.87530 0.90576 0.86372 0.74350 0.86989 0.92513 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.51 71.98 0.61 -1.94 16 2 C -0.12 -1.42 5.55 30.60 0.17 -1.25 16 3 C 0.13 2.07 2.67 44.25 0.12 2.19 16 4 H 0.10 2.00 7.58 -2.39 -0.02 1.98 16 5 N -0.71 -13.24 4.90 -446.10 -2.19 -15.42 16 6 C 0.52 12.67 6.39 87.65 0.56 13.23 16 7 O -0.56 -18.31 13.17 -3.03 -0.04 -18.35 16 8 C -0.09 -2.00 5.83 29.10 0.17 -1.83 16 9 C -0.02 -0.79 4.37 -19.88 -0.09 -0.88 16 10 C -0.17 -5.23 9.70 22.30 0.22 -5.01 16 11 C -0.08 -2.79 10.04 22.25 0.22 -2.57 16 12 C -0.24 -11.21 9.17 22.39 0.21 -11.00 16 13 C 0.12 5.95 6.65 22.58 0.15 6.10 16 14 O -0.25 -14.28 8.59 -22.72 -0.20 -14.48 16 15 C -0.40 -24.54 9.95 67.92 0.68 -23.87 16 16 H 0.08 5.14 5.44 -2.91 -0.02 5.13 16 17 C 0.01 0.57 5.49 84.83 0.47 1.03 16 18 N -0.92 -56.74 13.96 21.61 0.30 -56.44 16 19 Si 0.97 47.29 28.62 68.60 1.96 49.26 16 20 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 23 C -0.18 -7.52 9.64 22.39 0.22 -7.31 16 24 C 0.51 8.42 7.22 87.66 0.63 9.05 16 25 O -0.57 -13.52 15.84 -3.04 -0.05 -13.57 16 26 N -0.72 -6.71 5.57 -484.53 -2.70 -9.41 16 27 C 0.08 0.63 10.70 127.77 1.37 2.00 16 28 H 0.04 0.98 7.85 -2.39 -0.02 0.96 16 29 H 0.04 0.95 5.64 -2.39 -0.01 0.94 16 30 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 0.64 7.43 -2.39 -0.02 0.62 16 33 H 0.42 6.63 7.79 -92.71 -0.72 5.91 16 34 H 0.12 2.22 8.08 -2.39 -0.02 2.21 16 35 H 0.14 1.95 8.08 -2.39 -0.02 1.93 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 38 H 0.11 5.43 5.64 -2.92 -0.02 5.42 16 39 H 0.28 16.00 8.31 -92.71 -0.77 15.22 16 40 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.42 1.42 8.19 -92.71 -0.76 0.66 16 42 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -82.18 368.77 2.35 -79.83 By element: Atomic # 1 Polarization: 21.07 SS G_CDS: -0.44 Total: 20.63 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 5.70 Total: -22.05 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -4.59 Total: -81.27 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -0.28 Total: -46.39 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.96 Total: 49.26 kcal Total: -82.18 2.35 -79.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361409391.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.891 kcal (2) G-P(sol) polarization free energy of solvation -82.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds