Wall clock time and date at job start Tue Mar 31 2020 12:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47136 * 2 1 4 4 H 1.08997 * 109.47141 * 54.99548 * 3 2 1 5 5 C 1.50702 * 109.46990 * 174.99794 * 3 2 1 6 6 H 1.08005 * 119.99752 * 120.00495 * 5 3 2 7 7 C 1.37873 * 120.00278 * 299.99517 * 5 3 2 8 8 N 1.31517 * 119.99757 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 120.00372 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47025 * 90.00001 * 9 7 5 11 11 H 1.48494 * 109.47637 * 210.00350 * 9 7 5 12 12 H 1.48505 * 109.46988 * 330.00383 * 9 7 5 13 13 N 1.46496 * 109.47061 * 294.99590 * 3 2 1 14 14 C 1.34780 * 119.99790 * 84.99972 * 13 3 2 15 15 O 1.21588 * 120.00098 * 0.02562 * 14 13 3 16 16 C 1.47526 * 119.99937 * 180.02562 * 14 13 3 17 17 C 1.39735 * 120.77002 * 359.97438 * 16 14 13 18 18 C 1.38897 * 118.87692 * 180.02562 * 17 16 14 19 19 C 1.37852 * 119.43099 * 0.19308 * 18 17 16 20 20 N 1.32750 * 120.42186 * 359.63662 * 19 18 17 21 21 C 1.31846 * 122.58726 * 0.29300 * 20 19 18 22 22 O 1.35433 * 119.89108 * 179.97438 * 21 20 19 23 23 C 1.50796 * 122.25001 * 179.23357 * 19 18 17 24 24 C 1.52699 * 110.59650 * 18.04553 * 23 19 18 25 25 C 1.53317 * 108.43326 * 308.59576 * 24 23 19 26 26 C 1.50546 * 117.76776 * 180.24696 * 18 17 16 27 27 H 1.08994 * 109.25321 * 77.35524 * 26 18 17 28 28 O 1.42903 * 109.24812 * 317.89067 * 26 18 17 29 29 H 1.08998 * 109.47391 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47667 * 300.00470 * 1 2 3 31 31 H 1.09005 * 109.47238 * 59.99832 * 1 2 3 32 32 H 1.09002 * 109.47448 * 240.00034 * 2 1 3 33 33 H 1.08998 * 109.46950 * 119.99567 * 2 1 3 34 34 H 0.97002 * 119.99748 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00582 * 265.00367 * 13 3 2 36 36 H 1.08003 * 120.56610 * 0.04304 * 17 16 14 37 37 H 0.96696 * 113.99610 * 269.97735 * 22 21 20 38 38 H 1.08996 * 109.25288 * 138.33836 * 23 19 18 39 39 H 1.09002 * 109.25366 * 257.76020 * 23 19 18 40 40 H 1.09004 * 109.67199 * 68.33216 * 24 23 19 41 41 H 1.08999 * 109.66938 * 188.82461 * 24 23 19 42 42 H 1.08996 * 109.69154 * 310.21302 * 25 24 23 43 43 H 1.09004 * 109.68422 * 189.63768 * 25 24 23 44 44 H 0.96700 * 114.00311 * 60.00412 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3368 2.1730 9 14 6.0048 0.8813 1.3820 10 1 6.4415 2.1143 2.0850 11 1 6.4395 -0.3096 2.1551 12 1 6.6135 0.8416 0.0280 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3413 2.6326 -0.4318 16 6 0.0447 3.3234 -2.6278 17 6 0.9244 3.3697 -3.7125 18 6 0.5163 4.0008 -4.8806 19 6 -0.7389 4.5674 -4.9415 20 7 -1.5556 4.5057 -3.8968 21 6 -1.2187 3.9178 -2.7658 22 8 -2.0951 3.8872 -1.7337 23 6 -1.2402 5.2824 -6.1708 24 6 -0.4052 4.9022 -7.3914 25 6 1.0755 5.1012 -7.0469 26 6 1.4817 4.0312 -6.0354 27 1 1.4868 3.0575 -6.5253 28 8 2.7930 4.3192 -5.5458 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.8292 -0.0609 2.9500 35 1 2.2719 2.1231 -1.9978 36 1 1.9050 2.9222 -3.6439 37 1 -2.0229 4.6423 -1.1340 38 1 -2.2802 5.0079 -6.3472 39 1 -1.1753 6.3588 -6.0122 40 1 -0.5850 3.8583 -7.6484 41 1 -0.6753 5.5392 -8.2336 42 1 1.2220 6.0906 -6.6137 43 1 1.6790 5.0016 -7.9491 44 1 3.1264 3.6717 -4.9096 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362446245.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:19 Heat of formation + Delta-G solvation = -129.044527 kcal Electronic energy + Delta-G solvation = -27637.116724 eV Core-core repulsion = 23746.030729 eV Total energy + Delta-G solvation = -3891.085995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.24384 -40.51023 -39.25163 -37.55861 -36.87013 -36.19295 -34.50412 -33.79776 -32.61835 -30.99894 -30.09182 -28.85943 -25.82600 -25.13323 -24.49054 -23.37697 -22.54296 -21.43085 -20.84596 -19.83144 -19.15479 -18.39347 -18.23978 -17.63681 -17.09955 -16.81709 -16.44840 -16.13760 -15.90242 -15.64581 -15.26638 -14.82215 -14.60643 -14.36634 -14.28954 -14.19477 -13.86389 -13.66316 -13.48132 -13.19009 -12.90110 -12.84080 -12.69831 -12.67647 -12.19223 -12.11231 -12.07950 -11.94394 -11.76106 -11.61052 -11.49664 -11.07232 -10.90224 -10.82587 -10.54718 -10.39495 -9.85406 -9.61334 -8.15943 -6.33565 -0.52781 -0.09607 1.46236 1.46688 1.56934 1.83490 2.25553 2.40422 2.50600 2.68362 3.14101 3.30416 3.35506 3.38876 3.57726 3.67626 3.99787 4.03105 4.18586 4.30702 4.40494 4.46233 4.46933 4.54346 4.58818 4.62247 4.74581 4.83437 4.95551 5.03966 5.10734 5.13483 5.21072 5.24372 5.38433 5.41273 5.41941 5.52312 5.59430 5.76962 5.89381 6.14966 6.48111 6.70929 6.72864 6.74567 6.90787 7.31791 7.49474 8.89501 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015349 B = 0.003796 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.823277 B = 7374.358610 C = 8773.363506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.281 3.719 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.696 5.696 14 C 0.546 3.454 15 O -0.562 6.562 16 C -0.215 4.215 17 C -0.021 4.021 18 C -0.180 4.180 19 C 0.182 3.818 20 N -0.529 5.529 21 C 0.359 3.641 22 O -0.477 6.477 23 C -0.074 4.074 24 C -0.108 4.108 25 C -0.114 4.114 26 C 0.154 3.846 27 H 0.091 0.909 28 O -0.572 6.572 29 H 0.044 0.956 30 H 0.026 0.974 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.164 0.836 37 H 0.415 0.585 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 8.733 -21.691 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.794 3.206 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.181 1.181 13 N -0.346 5.346 14 C 0.333 3.667 15 O -0.443 6.443 16 C -0.222 4.222 17 C -0.047 4.047 18 C -0.183 4.183 19 C 0.046 3.954 20 N -0.249 5.249 21 C 0.177 3.823 22 O -0.286 6.286 23 C -0.111 4.111 24 C -0.146 4.146 25 C -0.151 4.151 26 C 0.095 3.905 27 H 0.108 0.892 28 O -0.380 6.380 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.181 0.819 37 H 0.276 0.724 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -5.313 8.947 -21.450 23.841 hybrid contribution 1.753 -0.695 1.667 2.517 sum -3.560 8.252 -19.783 21.729 Atomic orbital electron populations 1.21671 0.97259 0.99027 1.00085 1.21796 0.93414 0.99257 1.01458 1.18402 0.93846 0.89036 0.80954 0.98154 1.21561 0.91140 1.39023 1.06859 0.90664 1.25755 1.03243 0.94326 0.95028 1.70051 1.37104 1.38288 1.09856 0.85381 0.79155 0.77292 0.78732 1.20595 1.21179 1.18137 1.46130 1.14840 1.55812 1.17810 1.18166 0.82415 0.79026 0.87107 1.90764 1.51961 1.60527 1.41049 1.21129 0.96367 1.07927 0.96757 1.21889 0.99161 0.93188 0.90485 1.21443 0.97697 1.01142 0.97978 1.21713 0.88648 0.91569 0.93459 1.67184 1.37241 1.19775 1.00690 1.19172 0.85133 0.90554 0.87413 1.84661 1.57235 1.50089 1.36618 1.20670 1.01290 1.00255 0.88897 1.21569 0.92436 1.03752 0.96826 1.21596 0.97080 0.98080 0.98370 1.20706 0.79532 1.00648 0.89645 0.89183 1.86562 1.30940 1.55609 1.64909 0.93708 0.95434 0.94345 0.93927 0.90773 0.92612 0.76353 0.81897 0.72368 0.88653 0.88152 0.90433 0.87266 0.91261 0.88640 0.75966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.51 71.98 0.61 -5.07 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.73 16 3 C 0.28 14.10 2.24 44.25 0.10 14.20 16 4 H 0.00 0.03 7.58 -2.39 -0.02 0.02 16 5 C -0.55 -28.00 8.73 25.60 0.22 -27.78 16 6 H 0.08 3.54 7.74 -2.91 -0.02 3.51 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.91 -51.53 11.29 21.45 0.24 -51.29 16 9 Si 0.97 40.97 29.54 68.60 2.03 42.99 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 13 N -0.70 -28.11 4.98 -449.28 -2.24 -30.35 16 14 C 0.55 22.22 6.34 86.69 0.55 22.77 16 15 O -0.56 -27.01 12.36 16.70 0.21 -26.80 16 16 C -0.21 -7.01 5.90 -19.96 -0.12 -7.13 16 17 C -0.02 -0.52 8.78 22.79 0.20 -0.32 16 18 C -0.18 -3.72 5.57 -19.85 -0.11 -3.83 16 19 C 0.18 4.05 6.63 42.36 0.28 4.34 16 20 N -0.53 -15.24 10.18 -296.23 -3.02 -18.25 16 21 C 0.36 11.82 7.78 85.19 0.66 12.49 16 22 O -0.48 -16.36 11.69 -66.60 -0.78 -17.14 16 23 C -0.07 -1.01 5.91 29.78 0.18 -0.84 16 24 C -0.11 -0.91 5.97 30.60 0.18 -0.72 16 25 C -0.11 -1.27 5.62 30.61 0.17 -1.10 16 26 C 0.15 2.29 3.49 29.71 0.10 2.39 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 O -0.57 -9.74 13.14 -148.98 -1.96 -11.70 16 29 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 31 H 0.04 1.75 5.65 -2.38 -0.01 1.74 16 32 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.07 4.06 5.95 -2.39 -0.01 4.04 16 34 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.40 13.19 6.65 -92.71 -0.62 12.57 16 36 H 0.16 3.00 5.13 -2.91 -0.01 2.99 16 37 H 0.42 11.10 9.06 -74.06 -0.67 10.43 16 38 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 0.61 8.10 -2.39 -0.02 0.59 16 41 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 43 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.39 4.61 7.38 -74.06 -0.55 4.06 16 Total: -1.00 -72.80 351.18 -2.63 -75.42 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: -0.76 Total: 32.11 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 3.65 Total: 4.99 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -5.01 Total: -99.89 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -2.53 Total: -55.63 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -72.80 -2.63 -75.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362446245.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.622 kcal (2) G-P(sol) polarization free energy of solvation -72.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds