Wall clock time and date at job start Tue Mar 31 2020 12:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47271 * 2 1 4 4 H 1.09004 * 109.46718 * 54.99789 * 3 2 1 5 5 C 1.50697 * 109.47010 * 174.99876 * 3 2 1 6 6 H 1.07998 * 120.00005 * 120.00569 * 5 3 2 7 7 C 1.37877 * 119.99931 * 299.99303 * 5 3 2 8 8 N 1.31524 * 119.99767 * 180.02562 * 7 5 3 9 9 Si 1.86798 * 120.00066 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47234 * 89.99705 * 9 7 5 11 11 H 1.48500 * 109.46709 * 209.99452 * 9 7 5 12 12 H 1.48501 * 109.47336 * 329.99507 * 9 7 5 13 13 N 1.46496 * 109.47050 * 295.00002 * 3 2 1 14 14 C 1.34780 * 120.00409 * 84.99240 * 13 3 2 15 15 O 1.21593 * 119.99577 * 0.02562 * 14 13 3 16 16 C 1.47517 * 120.00137 * 179.97438 * 14 13 3 17 17 C 1.39741 * 120.77056 * 0.23652 * 16 14 13 18 18 C 1.38892 * 118.87245 * 180.30343 * 17 16 14 19 19 C 1.37848 * 119.43820 * 359.52784 * 18 17 16 20 20 N 1.32760 * 120.42142 * 0.25628 * 19 18 17 21 21 C 1.31853 * 122.58383 * 359.89448 * 20 19 18 22 22 O 1.35422 * 119.88970 * 179.89071 * 21 20 19 23 23 C 1.50794 * 122.25927 * 180.49446 * 19 18 17 24 24 C 1.52696 * 110.59303 * 342.05059 * 23 19 18 25 25 C 1.53319 * 108.42873 * 51.39365 * 24 23 19 26 26 C 1.50547 * 117.75922 * 179.36224 * 18 17 16 27 27 H 1.08997 * 109.22623 * 282.87512 * 26 18 17 28 28 O 1.42894 * 109.25847 * 42.33368 * 26 18 17 29 29 H 1.09004 * 109.47397 * 300.00484 * 1 2 3 30 30 H 1.09003 * 109.47291 * 60.00322 * 1 2 3 31 31 H 1.08997 * 109.47384 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47705 * 239.99841 * 2 1 3 33 33 H 1.09003 * 109.47291 * 119.99678 * 2 1 3 34 34 H 0.96993 * 119.99662 * 180.02562 * 8 7 5 35 35 H 0.97000 * 120.00071 * 264.99956 * 13 3 2 36 36 H 1.08007 * 120.56514 * 0.02877 * 17 16 14 37 37 H 0.96700 * 114.00112 * 90.00461 * 22 21 20 38 38 H 1.08995 * 109.24944 * 102.33409 * 23 19 18 39 39 H 1.09000 * 109.25504 * 221.76260 * 23 19 18 40 40 H 1.09004 * 109.67423 * 171.13023 * 24 23 19 41 41 H 1.09005 * 109.67474 * 291.62003 * 24 23 19 42 42 H 1.09001 * 109.69304 * 49.75643 * 25 24 23 43 43 H 1.09005 * 109.69315 * 170.28951 * 25 24 23 44 44 H 0.96706 * 113.99925 * 301.09625 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 5.4539 0.8805 1.3364 9 14 3.0962 0.1091 2.5702 10 1 2.8753 -1.3270 2.2637 11 1 3.7936 0.2351 3.8752 12 1 1.7876 0.8077 2.6388 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3671 15 8 -0.3413 2.6325 -0.4318 16 6 0.0451 3.3243 -2.6274 17 6 0.9233 3.3670 -3.7136 18 6 0.5179 4.0042 -4.8792 19 6 -0.7383 4.5684 -4.9411 20 7 -1.5541 4.5093 -3.8953 21 6 -1.2179 3.9195 -2.7650 22 8 -2.0926 3.8932 -1.7314 23 6 -1.2475 5.2656 -6.1774 24 6 -0.0893 5.6339 -7.1018 25 6 0.7647 4.3814 -7.3314 26 6 1.4892 4.0481 -6.0285 27 1 2.2437 4.8098 -5.8320 28 8 2.1263 2.7755 -6.1560 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8769 0.4821 2.1130 35 1 2.2720 2.1232 -1.9977 36 1 1.9024 2.9160 -3.6463 37 1 -2.6774 3.1231 -1.7306 38 1 -1.9331 4.6038 -6.7065 39 1 -1.7773 6.1726 -5.8862 40 1 -0.4796 5.9917 -8.0546 41 1 0.5170 6.4122 -6.6383 42 1 0.1241 3.5477 -7.6190 43 1 1.4935 4.5731 -8.1190 44 1 2.6080 2.4958 -5.3654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362446246.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:28 Heat of formation + Delta-G solvation = -94.461967 kcal Electronic energy + Delta-G solvation = -27722.441305 eV Core-core repulsion = 23832.854923 eV Total energy + Delta-G solvation = -3889.586382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 4.29 seconds Orbital eigenvalues (eV) -41.24902 -39.27992 -38.23584 -36.63837 -35.44785 -35.31619 -33.16415 -32.28011 -31.45156 -30.03867 -29.33162 -27.52438 -24.83850 -23.82609 -22.81447 -22.49693 -21.52230 -20.28924 -19.62763 -18.70139 -17.98845 -17.44610 -17.22342 -16.39119 -15.82371 -15.50306 -15.41910 -15.05900 -14.68710 -14.33429 -14.16154 -13.87495 -13.51360 -13.49594 -13.26686 -13.03128 -12.89570 -12.44447 -12.04489 -11.98860 -11.84244 -11.72468 -11.47121 -11.37255 -11.16934 -11.15350 -10.96233 -10.70783 -10.61458 -9.99759 -9.89117 -9.79491 -9.57705 -9.29298 -9.13990 -8.83152 -8.79574 -8.15023 -6.26407 -4.29579 0.51680 0.88870 2.96643 3.19834 3.32534 3.36867 3.37998 3.68923 3.81824 3.94382 4.17579 4.24701 4.27141 4.43162 4.48691 4.64831 4.87537 4.96859 5.04483 5.07388 5.13252 5.26424 5.37046 5.42754 5.50123 5.54254 5.66330 5.77244 5.89702 5.90498 5.94387 5.96624 6.11381 6.22388 6.59315 6.63785 6.76838 6.88374 7.16774 7.22027 7.30506 7.43631 7.49830 7.73073 8.06106 8.41642 8.68274 8.80998 9.33938 10.85493 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.003757 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.449495 B = 7451.093572 C = 8522.256494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.244 3.756 4 H 0.051 0.949 5 C -0.538 4.538 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.694 5.694 14 C 0.549 3.451 15 O -0.525 6.525 16 C -0.192 4.192 17 C -0.027 4.027 18 C -0.185 4.185 19 C 0.185 3.815 20 N -0.515 5.515 21 C 0.375 3.625 22 O -0.457 6.457 23 C -0.073 4.073 24 C -0.117 4.117 25 C -0.114 4.114 26 C 0.154 3.846 27 H 0.072 0.928 28 O -0.559 6.559 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.268 0.732 35 H 0.391 0.609 36 H 0.142 0.858 37 H 0.404 0.596 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.581 6.183 -17.469 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.140 3.860 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.343 5.343 14 C 0.334 3.666 15 O -0.403 6.403 16 C -0.199 4.199 17 C -0.054 4.054 18 C -0.188 4.188 19 C 0.048 3.952 20 N -0.234 5.234 21 C 0.192 3.808 22 O -0.264 6.264 23 C -0.111 4.111 24 C -0.155 4.155 25 C -0.151 4.151 26 C 0.095 3.905 27 H 0.090 0.910 28 O -0.366 6.366 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.225 0.775 36 H 0.160 0.840 37 H 0.263 0.737 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.788 6.993 -17.064 21.887 hybrid contribution 0.761 -1.359 1.165 1.945 sum -11.026 5.634 -15.900 20.152 Atomic orbital electron populations 1.21877 0.96967 0.99094 1.02182 1.22290 0.94366 0.99847 1.01221 1.19193 0.95750 0.88498 0.82511 0.93080 1.21012 0.88469 1.40079 1.07980 0.90223 1.24823 0.94876 0.95068 0.97635 1.69863 1.08687 1.44310 1.29853 0.86906 0.81009 0.79951 0.80923 1.20187 1.22100 1.18399 1.46096 1.14379 1.55716 1.18070 1.17719 0.83142 0.79404 0.86371 1.90788 1.51272 1.59155 1.39129 1.21365 0.97072 1.04571 0.96903 1.21645 0.98958 0.93922 0.90833 1.21093 0.97241 1.03003 0.97448 1.20931 0.88467 0.92859 0.92896 1.67102 1.37389 1.19110 0.99798 1.19016 0.87669 0.89069 0.85007 1.84729 1.50775 1.49485 1.41434 1.20491 0.98443 1.00803 0.91324 1.21559 0.96429 0.97528 0.99974 1.21541 0.99360 0.98426 0.95800 1.20497 0.91642 0.86114 0.92251 0.91012 1.86563 1.71016 1.36235 1.42741 0.92724 0.93155 0.94896 0.92256 0.92636 0.92210 0.77532 0.84037 0.73674 0.89195 0.89121 0.89884 0.90977 0.90429 0.90232 0.77036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.51 37.16 0.32 -2.48 16 2 C -0.14 -2.98 5.11 -26.73 -0.14 -3.12 16 3 C 0.24 5.59 1.83 -69.08 -0.13 5.47 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -14.07 9.31 -34.44 -0.32 -14.39 16 6 H 0.08 2.18 7.98 -52.49 -0.42 1.76 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -25.86 13.96 55.43 0.77 -25.08 16 9 Si 0.88 21.36 24.41 -169.99 -4.15 17.21 16 10 H -0.28 -6.44 6.83 56.52 0.39 -6.06 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.87 16 13 N -0.69 -13.20 4.98 -55.98 -0.28 -13.48 16 14 C 0.55 10.24 6.34 -12.48 -0.08 10.16 16 15 O -0.53 -11.20 12.36 -16.36 -0.20 -11.41 16 16 C -0.19 -2.97 5.90 -104.78 -0.62 -3.59 16 17 C -0.03 -0.34 8.78 -38.78 -0.34 -0.68 16 18 C -0.19 -2.06 5.57 -104.60 -0.58 -2.64 16 19 C 0.18 2.15 6.63 -82.29 -0.55 1.60 16 20 N -0.51 -7.27 10.18 -9.20 -0.09 -7.36 16 21 C 0.37 5.79 7.78 -16.77 -0.13 5.66 16 22 O -0.46 -7.09 11.69 -39.60 -0.46 -7.55 16 23 C -0.07 -0.59 5.91 -27.99 -0.17 -0.75 16 24 C -0.12 -0.71 5.97 -26.72 -0.16 -0.87 16 25 C -0.11 -0.83 5.62 -26.69 -0.15 -0.98 16 26 C 0.15 1.39 3.49 -28.08 -0.10 1.29 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 O -0.56 -5.51 13.16 -35.23 -0.46 -5.97 16 29 H 0.05 1.12 7.84 -51.93 -0.41 0.72 16 30 H 0.05 0.95 5.65 -51.93 -0.29 0.65 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.26 3.21 -51.93 -0.17 1.10 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.39 6.38 6.65 -40.82 -0.27 6.11 16 36 H 0.14 1.41 5.12 -52.48 -0.27 1.14 16 37 H 0.40 4.56 9.06 45.56 0.41 4.97 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 42 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.38 2.77 7.34 45.56 0.33 3.11 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -33.68 344.39 -7.33 -41.01 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.41 Total: 10.65 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -3.23 Total: -3.22 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.40 Total: -45.92 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.13 Total: -24.92 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.15 Total: 17.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.68 -7.33 -41.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362446246.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.454 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds