Wall clock time and date at job start Tue Mar 31 2020 12:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47406 * 2 1 4 4 H 1.09002 * 109.47098 * 53.62156 * 3 2 1 5 5 C 1.52999 * 109.47327 * 293.61909 * 3 2 1 6 6 C 1.53002 * 109.47164 * 173.61588 * 3 2 1 7 7 H 1.08999 * 109.47409 * 302.07808 * 6 3 2 8 8 N 1.46502 * 109.47185 * 182.07858 * 6 3 2 9 9 C 1.34778 * 120.00197 * 155.00112 * 8 6 3 10 10 O 1.21591 * 119.99387 * 0.02562 * 9 8 6 11 11 C 1.47526 * 120.00055 * 179.97438 * 9 8 6 12 12 C 1.39670 * 120.20085 * 0.02562 * 11 9 8 13 13 C 1.37826 * 119.92208 * 180.23239 * 12 11 9 14 14 C 1.38569 * 120.32224 * 359.49110 * 13 12 11 15 15 C 1.38025 * 120.40130 * 0.51074 * 14 13 12 16 16 C 1.38832 * 120.07306 * 359.74698 * 15 14 13 17 17 O 1.35516 * 120.16196 * 180.02562 * 16 15 14 18 18 C 1.34813 * 116.99883 * 354.51806 * 17 16 15 19 19 H 1.07997 * 120.00683 * 5.07058 * 18 17 16 20 20 C 1.38701 * 119.99916 * 185.06568 * 18 17 16 21 21 N 1.31522 * 120.00154 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47153 * 60.00093 * 22 20 18 24 24 H 1.48499 * 109.47397 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47210 * 300.00082 * 22 20 18 26 26 C 1.50701 * 109.47155 * 62.07952 * 6 3 2 27 27 N 1.34781 * 119.99642 * 280.63084 * 26 6 3 28 28 O 1.21280 * 120.00113 * 100.62489 * 26 6 3 29 29 H 1.09000 * 109.46671 * 59.99832 * 1 2 3 30 30 H 1.08991 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47219 * 300.00396 * 1 2 3 32 32 H 1.09000 * 109.47219 * 239.99604 * 2 1 3 33 33 H 1.09004 * 109.47123 * 120.00014 * 2 1 3 34 34 H 1.09003 * 109.47007 * 299.99666 * 5 3 2 35 35 H 1.08998 * 109.47049 * 59.99988 * 5 3 2 36 36 H 1.08996 * 109.47074 * 180.02562 * 5 3 2 37 37 H 0.96995 * 119.99877 * 335.00256 * 8 6 3 38 38 H 1.08004 * 120.03348 * 359.94979 * 12 11 9 39 39 H 1.08004 * 119.83954 * 179.72130 * 13 12 11 40 40 H 1.08006 * 119.79782 * 180.25625 * 14 13 12 41 41 H 1.08006 * 119.96394 * 179.76798 * 15 14 13 42 42 H 0.96998 * 120.00391 * 179.97438 * 21 20 18 43 43 H 0.96992 * 120.00196 * 5.55449 * 27 26 6 44 44 H 0.97005 * 119.99156 * 185.55259 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5865 1.9882 0.8274 5 6 1.6652 2.1160 -1.3216 6 6 3.5617 1.4454 0.1604 7 1 3.8307 0.9330 1.0841 8 7 4.0448 2.8275 0.2102 9 6 5.2079 3.1130 0.8286 10 8 5.8563 2.2233 1.3447 11 6 5.6946 4.5048 0.8782 12 6 4.9534 5.5299 0.2863 13 6 5.4159 6.8274 0.3320 14 6 6.6090 7.1227 0.9719 15 6 7.3522 6.1201 1.5613 16 6 6.9045 4.8065 1.5206 17 8 7.6326 3.8208 2.0992 18 6 8.8371 4.1624 2.5990 19 1 9.1470 5.1970 2.6019 20 6 9.6784 3.1852 3.1099 21 7 9.3010 1.9253 3.1070 22 14 11.3477 3.6584 3.8018 23 1 11.1649 4.6019 4.9339 24 1 12.0482 2.4401 4.2817 25 1 12.1570 4.3096 2.7406 26 6 4.1915 0.7349 -1.0099 27 7 4.2195 -0.6121 -1.0449 28 8 4.6731 1.3753 -1.9203 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 2.1189 1.5702 -2.1490 35 1 0.5813 2.1139 -1.4358 36 1 2.0290 3.1434 -1.3218 37 1 3.5277 3.5372 -0.2018 38 1 4.0211 5.3053 -0.2106 39 1 4.8439 7.6184 -0.1301 40 1 6.9614 8.1430 1.0062 41 1 8.2830 6.3577 2.0550 42 1 9.8895 1.2418 3.4639 43 1 3.7644 -1.1246 -0.3586 44 1 4.6948 -1.0690 -1.7565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462753500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:09 Heat of formation + Delta-G solvation = -80.169031 kcal Electronic energy + Delta-G solvation = -27564.735310 eV Core-core repulsion = 23675.768716 eV Total energy + Delta-G solvation = -3888.966594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.37945 -39.22927 -37.72885 -36.57186 -36.28378 -33.73226 -33.22291 -32.30801 -30.83371 -29.57842 -28.88175 -27.25083 -25.34610 -24.18910 -22.96276 -21.63272 -21.19058 -19.90365 -19.64553 -18.07227 -17.80443 -17.05990 -16.62433 -16.18532 -15.52121 -15.26895 -14.91425 -14.57838 -14.29925 -14.22415 -14.02120 -13.87240 -13.68979 -13.63719 -13.12029 -12.94956 -12.68934 -12.47978 -12.29459 -12.09562 -11.74299 -11.68756 -11.29727 -11.17518 -11.07292 -10.96246 -10.85906 -10.81776 -10.72660 -10.45408 -9.92427 -9.55337 -9.49626 -8.87569 -8.84272 -8.56882 -8.23020 -7.27188 -6.41625 -4.01385 1.75115 2.36428 2.81168 3.13336 3.15888 3.17812 3.38406 3.70400 3.93114 3.96295 4.52128 4.63270 4.67522 4.69618 5.02629 5.08668 5.09933 5.21770 5.25442 5.36116 5.38567 5.48993 5.56178 5.64120 5.71283 5.73958 5.76796 5.82856 5.85688 6.06592 6.11321 6.15585 6.17088 6.60196 6.71972 6.79732 6.92427 6.95115 7.09924 7.27133 7.32144 7.44891 7.73301 7.94376 8.10443 8.43493 8.97910 9.08807 9.70917 10.72277 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.003910 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.178475 B = 7158.572652 C = 8497.728552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.093 4.093 4 H 0.091 0.909 5 C -0.153 4.153 6 C 0.136 3.864 7 H 0.109 0.891 8 N -0.721 5.721 9 C 0.559 3.441 10 O -0.501 6.501 11 C -0.224 4.224 12 C -0.036 4.036 13 C -0.230 4.230 14 C -0.050 4.050 15 C -0.238 4.238 16 C 0.191 3.809 17 O -0.124 6.124 18 C -0.404 4.404 19 H 0.093 0.907 20 C 0.045 3.955 21 N -0.834 5.834 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C 0.513 3.487 27 N -0.858 5.858 28 O -0.531 6.531 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.397 0.603 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.271 0.729 43 H 0.399 0.601 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.085 -1.612 -5.570 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.113 4.113 4 H 0.109 0.891 5 C -0.210 4.210 6 C 0.026 3.974 7 H 0.127 0.873 8 N -0.376 5.376 9 C 0.349 3.651 10 O -0.375 6.375 11 C -0.229 4.229 12 C -0.055 4.055 13 C -0.249 4.249 14 C -0.069 4.069 15 C -0.258 4.258 16 C 0.131 3.869 17 O -0.022 6.022 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.465 5.465 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C 0.296 3.704 27 N -0.423 5.423 28 O -0.406 6.406 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.233 0.767 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.228 0.772 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -15.231 -2.191 -5.528 16.351 hybrid contribution 0.679 0.206 0.119 0.720 sum -14.552 -1.985 -5.409 15.651 Atomic orbital electron populations 1.21774 0.95125 1.01740 1.02118 1.21752 0.96773 0.95569 1.02725 1.21389 0.92095 0.97775 1.00005 0.89062 1.21941 1.01540 1.00983 0.96565 1.20776 0.93520 0.85402 0.97697 0.87286 1.45611 1.24892 1.06954 1.60182 1.18267 0.79843 0.89133 0.77826 1.90935 1.54590 1.47585 1.44417 1.18770 0.98787 0.92641 1.12715 1.20756 0.97005 0.92396 0.95319 1.20457 0.99481 0.95943 1.09033 1.20895 0.93727 0.97891 0.94383 1.21151 1.03447 0.92394 1.08766 1.19260 0.90211 0.88363 0.89071 1.84170 1.27329 1.31043 1.59692 1.21452 0.91216 0.95072 1.40239 0.88935 1.25372 0.99460 0.94573 0.96859 1.70120 1.36473 0.99935 1.40001 0.85801 0.80175 0.78260 0.79302 1.19374 1.20183 1.19374 1.21189 0.78583 0.82547 0.88041 1.44014 1.58229 1.07340 1.32723 1.90724 1.45925 1.65979 1.37994 0.92409 0.92622 0.92506 0.91086 0.91188 0.92126 0.91847 0.92273 0.76689 0.87098 0.87231 0.87164 0.85068 0.91893 0.77212 0.77180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.69 37.16 0.36 -0.61 16 2 C -0.13 -1.00 4.14 -26.73 -0.11 -1.11 16 3 C -0.09 -0.92 2.34 -90.62 -0.21 -1.13 16 4 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.15 -1.49 8.54 37.16 0.32 -1.17 16 6 C 0.14 1.97 2.20 -69.08 -0.15 1.82 16 7 H 0.11 1.69 7.58 -51.93 -0.39 1.29 16 8 N -0.72 -12.34 4.52 -55.98 -0.25 -12.60 16 9 C 0.56 12.80 7.72 -12.47 -0.10 12.70 16 10 O -0.50 -13.92 14.83 -16.57 -0.25 -14.16 16 11 C -0.22 -5.09 5.89 -104.81 -0.62 -5.71 16 12 C -0.04 -0.65 9.54 -39.20 -0.37 -1.02 16 13 C -0.23 -3.93 10.02 -39.61 -0.40 -4.32 16 14 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 15 C -0.24 -5.27 9.16 -39.44 -0.36 -5.63 16 16 C 0.19 4.88 6.66 -38.60 -0.26 4.62 16 17 O -0.12 -3.74 7.84 -21.04 -0.16 -3.91 16 18 C -0.40 -11.65 9.49 30.90 0.29 -11.35 16 19 H 0.09 2.42 5.21 -52.49 -0.27 2.14 16 20 C 0.05 1.27 5.49 -17.51 -0.10 1.18 16 21 N -0.83 -25.41 13.67 55.48 0.76 -24.65 16 22 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 26 C 0.51 8.12 5.62 -10.98 -0.06 8.06 16 27 N -0.86 -9.83 7.85 31.22 0.25 -9.58 16 28 O -0.53 -10.67 17.12 5.56 0.10 -10.57 16 29 H 0.06 0.37 6.61 -51.93 -0.34 0.02 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.54 6.35 -51.93 -0.33 0.21 16 33 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.06 0.69 6.97 -51.93 -0.36 0.32 16 35 H 0.06 0.49 6.61 -51.93 -0.34 0.14 16 36 H 0.06 0.59 6.61 -51.93 -0.34 0.25 16 37 H 0.40 5.73 5.02 -40.82 -0.21 5.52 16 38 H 0.11 1.59 6.40 -52.48 -0.34 1.25 16 39 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 41 H 0.13 2.84 5.64 -52.48 -0.30 2.55 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.40 3.35 7.33 -40.82 -0.30 3.05 16 44 H 0.40 4.17 8.93 -40.82 -0.36 3.80 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -38.25 359.44 -6.89 -45.14 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -5.56 Total: 14.13 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -2.16 Total: -5.00 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.75 Total: -46.83 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.32 Total: -28.65 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.25 -6.89 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462753500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.030 kcal (2) G-P(sol) polarization free energy of solvation -38.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds