Wall clock time and date at job start Tue Mar 31 2020 12:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47160 * 286.89969 * 3 2 1 5 5 C 1.34775 * 119.99675 * 90.00199 * 4 3 2 6 6 O 1.21289 * 119.99770 * 180.02562 * 5 4 3 7 7 C 1.50696 * 120.00170 * 359.97438 * 5 4 3 8 8 H 1.08996 * 115.55119 * 325.58550 * 7 5 4 9 9 C 1.53003 * 117.49873 * 111.25291 * 7 5 4 10 10 C 1.53001 * 117.50092 * 179.91156 * 7 5 4 11 11 H 1.09005 * 117.49549 * 359.97438 * 10 7 5 12 12 C 1.50693 * 117.50027 * 144.99863 * 10 7 5 13 13 O 1.20828 * 120.00272 * 359.97438 * 12 10 7 14 14 O 1.34231 * 119.99966 * 180.02562 * 12 10 7 15 15 C 1.46496 * 120.00070 * 270.00088 * 4 3 2 16 16 C 1.53048 * 109.45716 * 60.06976 * 15 4 3 17 17 C 1.53198 * 109.31072 * 178.61260 * 16 15 4 18 18 N 1.46926 * 108.77473 * 54.63396 * 17 16 15 19 19 C 1.36935 * 120.63127 * 126.37065 * 18 17 16 20 20 H 1.07998 * 120.00251 * 207.98585 * 19 18 17 21 21 C 1.38811 * 120.00005 * 27.97697 * 19 18 17 22 22 N 1.31627 * 119.99611 * 17.50959 * 21 19 18 23 23 Si 1.86795 * 120.00342 * 197.50349 * 21 19 18 24 24 H 1.48506 * 109.47077 * 94.07178 * 23 21 19 25 25 H 1.48500 * 109.47462 * 214.07144 * 23 21 19 26 26 H 1.48506 * 109.47024 * 334.07248 * 23 21 19 27 27 C 1.46932 * 118.74000 * 306.39116 * 18 17 16 28 28 C 1.53041 * 109.46333 * 300.00203 * 15 4 3 29 29 H 4.40643 * 5.51412 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.46953 * 166.90355 * 3 2 1 31 31 H 1.08999 * 109.47264 * 46.90605 * 3 2 1 32 32 H 1.08998 * 117.50371 * 215.00053 * 9 7 5 33 33 H 1.09004 * 117.49457 * 0.02562 * 9 7 5 34 34 H 0.96704 * 116.99761 * 179.97438 * 14 12 10 35 35 H 1.09002 * 109.45998 * 180.02562 * 15 4 3 36 36 H 1.08994 * 109.49942 * 298.56167 * 16 15 4 37 37 H 1.09001 * 109.49866 * 58.66392 * 16 15 4 38 38 H 1.09004 * 109.58714 * 294.84888 * 17 16 15 39 39 H 1.08997 * 109.58539 * 174.42075 * 17 16 15 40 40 H 0.97004 * 119.99791 * 179.97438 * 22 21 19 41 41 H 1.08995 * 109.58382 * 293.82271 * 27 18 17 42 42 H 1.08996 * 109.58532 * 173.39411 * 27 18 17 43 43 H 1.08997 * 109.49461 * 301.33501 * 28 15 4 44 44 H 1.08999 * 109.49880 * 61.43391 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4006 1.3216 5 6 3.3597 -1.7020 1.5901 6 8 3.7637 -2.0343 2.6844 7 6 3.1085 -2.7444 0.5312 8 1 2.2716 -2.5430 -0.1375 9 6 4.3253 -3.4621 -0.0564 10 6 3.3852 -4.2040 0.8969 11 1 3.7494 -4.4103 1.9034 12 6 2.4798 -5.2533 0.3052 13 8 1.5759 -4.9278 -0.4276 14 8 2.6769 -6.5495 0.5929 15 6 3.3782 0.6126 2.3512 16 6 2.0759 1.3588 2.6505 17 6 2.3266 2.3936 3.7519 18 7 3.4386 3.2616 3.3411 19 6 3.2928 4.6231 3.3275 20 1 3.8750 5.2217 2.6427 21 6 2.3965 5.2338 4.1938 22 7 1.9475 4.5801 5.2444 23 14 1.8278 6.9831 3.8689 24 1 0.5544 6.9558 3.1053 25 1 1.6150 7.6826 5.1614 26 1 2.8618 7.7016 3.0816 27 6 4.7100 2.6409 2.9446 28 6 4.4326 1.6033 1.8522 29 1 -1.0500 -0.0002 0.0000 30 1 3.0088 1.0018 -0.2329 31 1 3.0096 -0.7013 -0.7504 32 1 4.2890 -3.7329 -1.1116 33 1 5.3075 -3.1805 0.3233 34 1 2.0703 -7.1858 0.1900 35 1 3.7361 0.1283 3.2598 36 1 1.7304 1.8639 1.7486 37 1 1.3184 0.6493 2.9836 38 1 2.5846 1.8840 4.6803 39 1 1.4294 2.9946 3.8997 40 1 1.3215 5.0070 5.8501 41 1 5.1623 2.1514 3.8071 42 1 5.3853 3.4050 2.5596 43 1 5.3524 1.0678 1.6171 44 1 4.0649 2.1061 0.9578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588460297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:43 Heat of formation + Delta-G solvation = -37.185166 kcal Electronic energy + Delta-G solvation = -27282.669397 eV Core-core repulsion = 23395.566723 eV Total energy + Delta-G solvation = -3887.102674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.91909 -41.07485 -39.27901 -37.60186 -37.07058 -36.72860 -34.63331 -33.45992 -31.99373 -31.35332 -28.23516 -27.71030 -26.57181 -25.13971 -23.89849 -23.28572 -21.86236 -20.83927 -20.50663 -19.55262 -18.91267 -18.64351 -18.55317 -17.50148 -17.16306 -16.82637 -16.66702 -16.35186 -15.75731 -15.42147 -15.24981 -15.08019 -14.82259 -14.60293 -14.32165 -14.26885 -14.01872 -13.60582 -13.32288 -13.20430 -13.06286 -12.67065 -12.64478 -12.58628 -12.26350 -12.00721 -11.96905 -11.94808 -11.81547 -11.67883 -11.56544 -11.41368 -11.30304 -11.15770 -10.81509 -10.57663 -9.86607 -8.72373 -7.88088 -5.33799 0.90888 1.26023 1.46596 1.48357 1.49138 1.57997 1.87495 1.91508 2.35907 2.51288 2.63457 3.27755 3.36265 3.41172 3.50424 3.64713 3.69695 3.88582 4.03740 4.09498 4.21650 4.29574 4.33096 4.45558 4.49959 4.59386 4.63865 4.76037 4.80351 4.85449 4.91710 5.01834 5.04759 5.08674 5.13894 5.29836 5.43487 5.50357 5.52427 5.63102 5.67328 6.27952 6.38011 6.69049 6.93622 7.00930 7.12865 7.83593 8.36473 9.19136 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.024755 B = 0.002946 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.830518 B = 9501.611882 C = 9866.171743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.232 4.232 3 C 0.213 3.787 4 N -0.591 5.591 5 C 0.544 3.456 6 O -0.575 6.575 7 C -0.166 4.166 8 H 0.142 0.858 9 C -0.081 4.081 10 C -0.151 4.151 11 H 0.142 0.858 12 C 0.521 3.479 13 O -0.543 6.543 14 O -0.504 6.504 15 C 0.154 3.846 16 C -0.122 4.122 17 C 0.184 3.816 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.074 0.926 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.968 3.032 24 H -0.287 1.287 25 H -0.298 1.298 26 H -0.264 1.264 27 C 0.142 3.858 28 C -0.122 4.122 29 H 0.236 0.764 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.432 0.568 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.044 0.956 38 H -0.011 1.011 39 H 0.056 0.944 40 H 0.249 0.751 41 H 0.010 0.990 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.274 -18.584 -16.493 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.234 4.234 3 C 0.092 3.908 4 N -0.321 5.321 5 C 0.333 3.667 6 O -0.454 6.454 7 C -0.187 4.187 8 H 0.160 0.840 9 C -0.118 4.118 10 C -0.171 4.171 11 H 0.160 0.840 12 C 0.364 3.636 13 O -0.434 6.434 14 O -0.318 6.318 15 C 0.052 3.948 16 C -0.162 4.162 17 C 0.057 3.943 18 N -0.331 5.331 19 C -0.389 4.389 20 H 0.091 0.909 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.796 3.204 24 H -0.214 1.214 25 H -0.225 1.225 26 H -0.188 1.188 27 C 0.017 3.983 28 C -0.161 4.161 29 H 0.253 0.747 30 H 0.134 0.866 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.295 0.705 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.007 0.993 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.466 -18.328 -15.821 24.459 hybrid contribution -1.561 0.615 0.574 1.773 sum 1.906 -17.713 -15.247 23.449 Atomic orbital electron populations 1.25656 0.96963 0.99991 0.97965 1.23933 0.95746 1.01449 1.02223 1.18762 0.83236 1.04662 0.84188 1.48040 1.64138 1.05723 1.14179 1.19992 0.76039 0.82976 0.87649 1.90698 1.47913 1.81060 1.25777 1.22251 1.05281 0.89939 1.01240 0.84025 1.23345 0.93841 0.94744 0.99859 1.21654 1.03103 0.88642 1.03653 0.84045 1.22139 0.81870 0.82878 0.76680 1.90735 1.32933 1.82762 1.36930 1.84467 1.59906 1.17226 1.70208 1.20887 0.95512 0.87753 0.90694 1.22236 0.96406 0.97410 1.00125 1.20473 0.91999 0.90107 0.91732 1.44338 1.08506 1.02219 1.78086 1.19566 1.22123 0.83396 1.13854 0.90879 1.25844 1.02421 1.01654 0.94913 1.70212 1.35441 1.39081 1.13669 0.85245 0.78499 0.80073 0.76600 1.21392 1.22491 1.18826 1.21035 0.87932 0.94684 0.94692 1.22200 0.98268 0.96254 0.99423 0.74737 0.86616 0.84635 0.84113 0.85101 0.70539 0.91040 0.91874 0.93758 0.99263 0.92586 0.94204 0.97245 0.91448 0.89724 0.90651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.47 19.25 74.32 1.43 -3.04 16 2 C -0.23 -5.74 11.73 31.12 0.37 -5.38 16 3 C 0.21 4.43 5.01 84.57 0.42 4.85 16 4 N -0.59 -16.04 2.37 -808.15 -1.91 -17.95 16 5 C 0.54 15.06 7.45 87.66 0.65 15.72 16 6 O -0.57 -20.47 15.59 -3.06 -0.05 -20.52 16 7 C -0.17 -3.26 4.30 -11.54 -0.05 -3.31 16 8 H 0.14 2.78 6.50 -2.39 -0.02 2.76 16 9 C -0.08 -0.98 9.94 30.62 0.30 -0.67 16 10 C -0.15 -2.73 5.82 -11.52 -0.07 -2.79 16 11 H 0.14 2.85 7.67 -2.38 -0.02 2.83 16 12 C 0.52 9.44 8.11 71.23 0.58 10.01 16 13 O -0.54 -12.82 17.02 21.96 0.37 -12.45 16 14 O -0.50 -6.39 13.42 -51.43 -0.69 -7.08 16 15 C 0.15 5.29 2.48 45.02 0.11 5.40 16 16 C -0.12 -4.82 4.73 30.68 0.15 -4.68 16 17 C 0.18 9.18 5.31 86.36 0.46 9.63 16 18 N -0.61 -30.43 2.99 -699.09 -2.09 -32.52 16 19 C -0.26 -14.09 9.58 84.03 0.81 -13.28 16 20 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 21 C -0.05 -2.98 4.90 84.86 0.42 -2.56 16 22 N -0.94 -56.41 11.22 21.65 0.24 -56.17 16 23 Si 0.97 44.79 29.59 68.60 2.03 46.82 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 27 C 0.14 5.76 6.52 86.36 0.56 6.32 16 28 C -0.12 -3.82 5.31 30.67 0.16 -3.65 16 29 H 0.24 4.13 7.80 -4.42 -0.03 4.10 16 30 H 0.12 2.26 6.46 -2.39 -0.02 2.25 16 31 H 0.14 1.83 6.64 -2.39 -0.02 1.81 16 32 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.13 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.43 1.54 9.10 -74.05 -0.67 0.87 16 35 H 0.07 2.87 6.90 -2.39 -0.02 2.85 16 36 H 0.06 2.46 7.02 -2.39 -0.02 2.44 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.06 3.16 6.06 -2.39 -0.01 3.15 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.07 2.57 7.93 -2.39 -0.02 2.56 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.07 2.21 6.72 -2.39 -0.02 2.19 16 Total: -1.00 -76.95 367.84 4.56 -72.39 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.35 Total: 14.91 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 6.30 Total: 12.56 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.76 Total: -106.64 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.36 Total: -40.04 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -76.95 4.56 -72.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588460297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.206 kcal (2) G-P(sol) polarization free energy of solvation -76.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds