Wall clock time and date at job start Tue Mar 31 2020 12:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47267 * 60.00028 * 9 7 5 11 11 H 1.48501 * 109.47250 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47201 * 299.99856 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39946 * 120.00246 * 175.37992 * 16 14 13 18 18 C 1.38862 * 120.07206 * 214.81634 * 17 16 14 19 19 C 1.38113 * 119.93034 * 179.76679 * 18 17 16 20 20 C 1.38284 * 120.06849 * 0.50598 * 19 18 17 21 21 C 1.50703 * 119.92720 * 179.72085 * 20 19 18 22 22 C 1.52997 * 109.47074 * 270.01944 * 21 20 19 23 23 C 1.50703 * 109.47074 * 179.97438 * 22 21 20 24 24 O 1.20831 * 119.99552 * 0.02562 * 23 22 21 25 25 O 1.34230 * 120.00231 * 180.02562 * 23 22 21 26 26 C 1.38275 * 120.14130 * 359.74704 * 20 19 18 27 27 C 1.38121 * 120.06968 * 359.97438 * 26 20 19 28 28 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 30 30 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 31 31 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 32 32 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 33 33 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 34 34 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 35 35 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 36 36 H 1.07997 * 120.03860 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.96602 * 180.25399 * 19 18 17 38 38 H 1.08992 * 109.47400 * 30.02691 * 21 20 19 39 39 H 1.09002 * 109.46612 * 150.02578 * 21 20 19 40 40 H 1.08992 * 109.47618 * 300.00614 * 22 21 20 41 41 H 1.09002 * 109.46883 * 60.00800 * 22 21 20 42 42 H 0.96695 * 116.99785 * 180.02562 * 25 23 22 43 43 H 1.08002 * 119.96826 * 180.02562 * 26 20 19 44 44 H 1.07996 * 120.03604 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4994 2.2815 1.3820 11 1 6.3979 0.2167 2.6501 12 1 6.5975 0.1473 0.2347 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2122 3.7853 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1151 4.2403 -4.0532 20 6 -3.7719 4.7915 -2.9683 21 6 -5.1659 5.3401 -3.1326 22 6 -5.0900 6.8196 -3.5146 23 6 -6.4840 7.3680 -3.6796 24 8 -7.4401 6.6492 -3.5086 25 8 -6.6635 8.6550 -4.0164 26 6 -3.1522 4.8409 -1.7332 27 6 -1.8747 4.3390 -1.5794 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8294 -0.0619 2.9494 34 1 2.2718 2.1232 -1.9978 35 1 0.7249 3.3614 -3.2365 36 1 -1.3211 3.3160 -4.7560 37 1 -3.6018 4.2032 -5.0166 38 1 -5.6834 4.7883 -3.9173 39 1 -5.7108 5.2346 -2.1945 40 1 -4.5725 7.3714 -2.7299 41 1 -4.5452 6.9252 -4.4528 42 1 -7.5759 8.9610 -4.1102 43 1 -3.6680 5.2716 -0.8877 44 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:44 Heat of formation + Delta-G solvation = -108.539430 kcal Electronic energy + Delta-G solvation = -25961.732689 eV Core-core repulsion = 22071.535862 eV Total energy + Delta-G solvation = -3890.196827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -40.63964 -40.22549 -38.69970 -36.58103 -35.74492 -34.60096 -33.26610 -32.31611 -30.85910 -30.83207 -29.00471 -26.93004 -25.11780 -23.13275 -22.84896 -21.96329 -20.99940 -20.34633 -19.53765 -18.46391 -18.20718 -17.45777 -16.96537 -16.52262 -16.02035 -15.43960 -15.20244 -15.01726 -14.61051 -14.26898 -13.88016 -13.73665 -13.62781 -13.45434 -13.10272 -12.98227 -12.67514 -12.42843 -11.96382 -11.90057 -11.58248 -11.55051 -11.48260 -11.26167 -11.03050 -10.96638 -10.91133 -10.84776 -10.33979 -10.19963 -9.97449 -9.59608 -9.35264 -9.06836 -8.80154 -8.52670 -8.02190 -7.68255 -6.14617 -4.24282 1.35837 1.51529 1.86110 2.71818 3.17687 3.23722 3.29510 3.31698 3.65192 4.02135 4.30108 4.55727 4.64196 4.74020 4.90230 5.00735 5.05800 5.16938 5.18443 5.26323 5.39086 5.47906 5.70082 5.83829 5.87292 6.10460 6.13952 6.38169 6.40514 6.47398 6.49593 6.65802 6.66803 6.75827 7.01239 7.10975 7.25347 7.34138 7.36618 7.44133 7.53060 7.62067 7.84634 7.96362 8.16725 8.70769 8.82151 9.22833 9.44149 10.90580 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032688 B = 0.002084 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.367587 B =13435.355817 C =13552.155906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.718 5.718 14 C 0.692 3.308 15 O -0.575 6.575 16 N -0.699 5.699 17 C 0.182 3.818 18 C -0.155 4.155 19 C -0.096 4.096 20 C -0.119 4.119 21 C -0.063 4.063 22 C -0.109 4.109 23 C 0.477 3.523 24 O -0.517 6.517 25 O -0.520 6.520 26 C -0.094 4.094 27 C -0.118 4.118 28 H 0.021 0.979 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.265 0.735 34 H 0.385 0.615 35 H 0.402 0.598 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.409 0.591 43 H 0.122 0.878 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.628 12.203 -14.174 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.453 6.453 16 N -0.346 5.346 17 C 0.086 3.914 18 C -0.176 4.176 19 C -0.114 4.114 20 C -0.120 4.120 21 C -0.100 4.100 22 C -0.146 4.146 23 C 0.320 3.680 24 O -0.405 6.405 25 O -0.332 6.332 26 C -0.113 4.113 27 C -0.139 4.139 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.217 0.783 35 H 0.236 0.764 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.268 0.732 43 H 0.140 0.860 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.062 11.640 -12.943 22.377 hybrid contribution 1.052 0.116 -0.718 1.279 sum -13.009 11.755 -13.661 22.227 Atomic orbital electron populations 1.21809 0.98238 0.97923 1.01270 1.21956 0.92706 0.99850 1.02220 1.18719 0.93976 0.88908 0.79905 0.93207 1.21177 0.90640 1.39240 1.06335 0.92165 1.24878 0.98625 0.94793 0.95371 1.69888 1.35229 1.37380 1.09334 0.86500 0.84786 0.78290 0.77458 1.20201 1.21123 1.20198 1.45846 1.13427 1.58321 1.19340 1.16118 0.83670 0.78696 0.82240 1.90888 1.51696 1.64787 1.37892 1.42892 1.12184 1.61132 1.18419 1.17599 0.85028 0.94572 0.94220 1.20838 0.95713 1.04383 0.96700 1.20702 0.94029 0.98607 0.98096 1.19586 0.95829 1.02573 0.93985 1.20312 0.93898 0.92179 1.03605 1.21440 0.90305 0.97209 1.05692 1.23706 0.93059 0.79299 0.71915 1.90741 1.43715 1.59180 1.46854 1.84557 1.37679 1.29204 1.81727 1.20939 0.94699 0.99164 0.96507 1.21442 0.95493 0.97078 0.99889 0.95999 0.93146 0.94317 0.95118 0.88252 0.92457 0.78251 0.76385 0.86003 0.86118 0.90277 0.90163 0.87296 0.87413 0.73239 0.86025 0.83749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.52 37.16 0.32 -2.72 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.29 7.03 2.24 -69.08 -0.15 6.88 16 4 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 5 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.29 11.29 55.43 0.63 -23.67 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.72 -14.31 5.02 -59.81 -0.30 -14.61 16 14 C 0.69 13.34 6.99 -86.92 -0.61 12.73 16 15 O -0.58 -12.98 10.92 5.29 0.06 -12.92 16 16 N -0.70 -10.26 5.34 -14.22 -0.08 -10.34 16 17 C 0.18 2.60 6.30 -83.69 -0.53 2.07 16 18 C -0.16 -1.78 9.97 -39.40 -0.39 -2.17 16 19 C -0.10 -0.97 9.69 -39.61 -0.38 -1.36 16 20 C -0.12 -1.24 5.14 -104.59 -0.54 -1.78 16 21 C -0.06 -0.54 4.63 -27.88 -0.13 -0.66 16 22 C -0.11 -0.74 5.79 -27.88 -0.16 -0.90 16 23 C 0.48 3.86 8.33 36.01 0.30 4.16 16 24 O -0.52 -5.89 16.74 -18.75 -0.31 -6.20 16 25 O -0.52 -3.13 13.42 -39.26 -0.53 -3.66 16 26 C -0.09 -1.15 9.69 -39.61 -0.38 -1.54 16 27 C -0.12 -1.78 8.70 -39.39 -0.34 -2.13 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 30 H 0.04 0.86 5.66 -51.93 -0.29 0.56 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.64 5.95 -51.93 -0.31 2.34 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.39 6.57 8.56 -40.82 -0.35 6.22 16 35 H 0.40 4.52 8.84 -40.82 -0.36 4.16 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 37 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 39 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 40 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.41 0.85 9.10 45.56 0.41 1.27 16 43 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.14 2.54 6.22 -52.49 -0.33 2.22 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -32.60 367.67 -8.92 -41.52 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.36 Total: 12.17 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -3.54 Total: -3.07 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: 0.25 Total: -48.62 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.78 Total: -22.79 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.60 -8.92 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.018 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds