Wall clock time and date at job start Tue Mar 31 2020 12:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47267 * 60.00028 * 9 7 5 11 11 H 1.48501 * 109.47250 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47201 * 299.99856 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39946 * 120.00246 * 175.37992 * 16 14 13 18 18 C 1.38862 * 120.07206 * 214.81634 * 17 16 14 19 19 C 1.38113 * 119.93034 * 179.76679 * 18 17 16 20 20 C 1.38284 * 120.06849 * 0.50598 * 19 18 17 21 21 C 1.50703 * 119.92720 * 179.72085 * 20 19 18 22 22 C 1.52997 * 109.47074 * 270.01944 * 21 20 19 23 23 C 1.50703 * 109.47074 * 179.97438 * 22 21 20 24 24 O 1.20831 * 119.99552 * 0.02562 * 23 22 21 25 25 O 1.34230 * 120.00231 * 180.02562 * 23 22 21 26 26 C 1.38275 * 120.14130 * 359.74704 * 20 19 18 27 27 C 1.38121 * 120.06968 * 359.97438 * 26 20 19 28 28 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 30 30 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 31 31 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 32 32 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 33 33 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 34 34 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 35 35 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 36 36 H 1.07997 * 120.03860 * 359.97438 * 18 17 16 37 37 H 1.08003 * 119.96602 * 180.25399 * 19 18 17 38 38 H 1.08992 * 109.47400 * 30.02691 * 21 20 19 39 39 H 1.09002 * 109.46612 * 150.02578 * 21 20 19 40 40 H 1.08992 * 109.47618 * 300.00614 * 22 21 20 41 41 H 1.09002 * 109.46883 * 60.00800 * 22 21 20 42 42 H 0.96695 * 116.99785 * 180.02562 * 25 23 22 43 43 H 1.08002 * 119.96826 * 180.02562 * 26 20 19 44 44 H 1.07996 * 120.03604 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4994 2.2815 1.3820 11 1 6.3979 0.2167 2.6501 12 1 6.5975 0.1473 0.2347 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2122 3.7853 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1151 4.2403 -4.0532 20 6 -3.7719 4.7915 -2.9683 21 6 -5.1659 5.3401 -3.1326 22 6 -5.0900 6.8196 -3.5146 23 6 -6.4840 7.3680 -3.6796 24 8 -7.4401 6.6492 -3.5086 25 8 -6.6635 8.6550 -4.0164 26 6 -3.1522 4.8409 -1.7332 27 6 -1.8747 4.3390 -1.5794 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8294 -0.0619 2.9494 34 1 2.2718 2.1232 -1.9978 35 1 0.7249 3.3614 -3.2365 36 1 -1.3211 3.3160 -4.7560 37 1 -3.6018 4.2032 -5.0166 38 1 -5.6834 4.7883 -3.9173 39 1 -5.7108 5.2346 -2.1945 40 1 -4.5725 7.3714 -2.7299 41 1 -4.5452 6.9252 -4.4528 42 1 -7.5759 8.9610 -4.1102 43 1 -3.6680 5.2716 -0.8877 44 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:40 Heat of formation + Delta-G solvation = -130.565268 kcal Electronic energy + Delta-G solvation = -25962.687801 eV Core-core repulsion = 22071.535862 eV Total energy + Delta-G solvation = -3891.151939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.61154 -41.19692 -39.86390 -37.38793 -37.06836 -35.98049 -34.51928 -33.93852 -32.58192 -31.78116 -30.04397 -28.73786 -26.03995 -24.93686 -23.89407 -22.99888 -22.08908 -21.36806 -21.30997 -19.74439 -19.06360 -18.70821 -17.82928 -17.59358 -17.15406 -16.97360 -16.62724 -16.08861 -15.97640 -15.77377 -15.01279 -14.75314 -14.57043 -14.48215 -14.39857 -14.21642 -13.97996 -13.62321 -13.49483 -13.16560 -12.94775 -12.88768 -12.64904 -12.51511 -12.44010 -12.26539 -12.15999 -12.05782 -11.80523 -11.59969 -11.59000 -11.18226 -11.05220 -10.80366 -10.52213 -9.77106 -9.68340 -8.84763 -8.14741 -6.32000 0.38920 0.56490 1.26286 1.46065 1.47790 1.55429 1.85531 2.18156 2.29879 2.43719 2.95550 3.14638 3.51410 3.93179 3.96053 4.02967 4.18150 4.24211 4.50195 4.55355 4.58115 4.58648 4.61129 4.70474 4.76074 4.80574 4.99743 5.06326 5.16279 5.19703 5.25154 5.41989 5.44827 5.47720 5.56389 5.61948 5.67924 5.70898 5.76079 5.79557 5.90039 6.17790 6.20811 6.33145 6.76003 7.04059 7.29284 7.36689 7.75989 8.90347 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032688 B = 0.002084 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.367587 B =13435.355817 C =13552.155906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.971 3.029 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.716 5.716 14 C 0.691 3.309 15 O -0.613 6.613 16 N -0.680 5.680 17 C 0.153 3.847 18 C -0.145 4.145 19 C -0.090 4.090 20 C -0.105 4.105 21 C -0.059 4.059 22 C -0.105 4.105 23 C 0.484 3.516 24 O -0.556 6.556 25 O -0.516 6.516 26 C -0.102 4.102 27 C -0.145 4.145 28 H 0.042 0.958 29 H 0.024 0.976 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.265 0.735 34 H 0.401 0.599 35 H 0.419 0.581 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.129 0.871 42 H 0.426 0.574 43 H 0.130 0.870 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.674 12.987 -17.320 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.493 6.493 16 N -0.329 5.329 17 C 0.057 3.943 18 C -0.165 4.165 19 C -0.108 4.108 20 C -0.106 4.106 21 C -0.096 4.096 22 C -0.143 4.143 23 C 0.329 3.671 24 O -0.447 6.447 25 O -0.330 6.330 26 C -0.120 4.120 27 C -0.166 4.166 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.257 0.743 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.288 0.712 43 H 0.148 0.852 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.116 12.480 -16.171 24.830 hybrid contribution 0.913 -0.006 0.214 0.938 sum -13.203 12.475 -15.957 24.178 Atomic orbital electron populations 1.21625 0.97119 0.98798 1.00090 1.21801 0.93572 0.99348 1.01266 1.18250 0.93422 0.88760 0.80236 0.98342 1.21532 0.91315 1.38999 1.06727 0.90948 1.25766 1.03285 0.94426 0.95046 1.70049 1.37104 1.38231 1.09854 0.85417 0.79113 0.78394 0.77505 1.19702 1.21334 1.18929 1.45441 1.14294 1.58591 1.18496 1.16214 0.82936 0.78644 0.83025 1.90877 1.52694 1.66022 1.39705 1.42530 1.13090 1.60045 1.17270 1.17836 0.84951 0.96121 0.95350 1.21118 0.96072 1.03352 0.95975 1.21132 0.93403 0.96916 0.99358 1.19790 0.96371 1.01273 0.93198 1.20261 0.92309 0.93568 1.03458 1.21425 0.89950 0.95825 1.07068 1.23852 0.92965 0.79461 0.70837 1.90736 1.44963 1.60200 1.48802 1.84517 1.39337 1.28089 1.81025 1.21050 0.93814 0.99205 0.97956 1.21276 0.96965 0.99475 0.98887 0.93907 0.95662 0.94105 0.94088 0.90926 0.92606 0.76383 0.74283 0.83303 0.82579 0.89719 0.91108 0.86372 0.85275 0.71245 0.85243 0.87524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.52 71.98 0.61 -4.86 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 3 C 0.30 15.06 2.24 44.25 0.10 15.16 16 4 H 0.00 -0.08 7.57 -2.39 -0.02 -0.10 16 5 C -0.55 -28.46 8.73 25.60 0.22 -28.23 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.80 5.29 84.65 0.45 1.25 16 8 N -0.91 -51.93 11.29 21.45 0.24 -51.69 16 9 Si 0.97 41.56 29.54 68.60 2.03 43.58 16 10 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 13 N -0.72 -28.89 5.02 -461.41 -2.32 -31.21 16 14 C 0.69 27.28 6.99 179.06 1.25 28.53 16 15 O -0.61 -29.20 10.92 -4.00 -0.04 -29.25 16 16 N -0.68 -19.67 5.34 -317.18 -1.69 -21.36 16 17 C 0.15 4.25 6.30 38.15 0.24 4.49 16 18 C -0.14 -2.89 9.97 22.39 0.22 -2.67 16 19 C -0.09 -1.50 9.69 22.25 0.22 -1.29 16 20 C -0.11 -1.97 5.14 -19.84 -0.10 -2.07 16 21 C -0.06 -0.87 4.63 29.85 0.14 -0.73 16 22 C -0.11 -1.14 5.79 29.85 0.17 -0.96 16 23 C 0.48 6.80 8.33 71.24 0.59 7.40 16 24 O -0.56 -11.93 16.74 21.95 0.37 -11.57 16 25 O -0.52 -4.97 13.42 -51.42 -0.69 -5.66 16 26 C -0.10 -2.46 9.69 22.25 0.22 -2.25 16 27 C -0.15 -4.52 8.70 22.39 0.19 -4.33 16 28 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.02 1.25 7.85 -2.39 -0.02 1.23 16 30 H 0.04 1.83 5.66 -2.39 -0.01 1.82 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.07 4.00 5.95 -2.39 -0.01 3.99 16 33 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 34 H 0.40 13.41 8.56 -92.71 -0.79 12.62 16 35 H 0.42 8.78 8.84 -92.71 -0.82 7.96 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.08 1.21 8.04 -2.39 -0.02 1.19 16 39 H 0.07 1.21 8.04 -2.39 -0.02 1.19 16 40 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.43 0.86 9.10 -74.06 -0.67 0.18 16 43 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.11 4.11 6.22 -2.91 -0.02 4.09 16 Total: -1.00 -73.97 367.67 1.35 -72.61 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -1.23 Total: 30.89 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 4.69 Total: 3.65 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -3.77 Total: -104.26 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -0.37 Total: -46.48 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -73.97 1.35 -72.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.951 kcal (2) G-P(sol) polarization free energy of solvation -73.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds