Wall clock time and date at job start Tue Mar 31 2020 12:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.09000 * 109.46597 * 305.00200 * 3 2 1 5 5 C 1.50693 * 109.46984 * 184.99680 * 3 2 1 6 6 H 1.08004 * 120.00137 * 239.99588 * 5 3 2 7 7 C 1.37878 * 119.99841 * 60.00473 * 5 3 2 8 8 N 1.31515 * 120.00278 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00029 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47011 * 89.99517 * 9 7 5 11 11 H 1.48495 * 109.47464 * 209.99826 * 9 7 5 12 12 H 1.48504 * 109.47216 * 329.99973 * 9 7 5 13 13 N 1.46509 * 109.46924 * 64.99772 * 3 2 1 14 14 C 1.34773 * 119.99853 * 274.99809 * 13 3 2 15 15 O 1.21594 * 120.00395 * 0.02562 * 14 13 3 16 16 N 1.34783 * 119.99671 * 180.02562 * 14 13 3 17 17 C 1.40044 * 119.99843 * 180.02562 * 16 14 13 18 18 N 1.31067 * 126.02453 * 0.28578 * 17 16 14 19 19 N 1.40002 * 108.47731 * 180.14024 * 18 17 16 20 20 C 1.46506 * 125.83436 * 179.87830 * 19 18 17 21 21 C 1.34801 * 108.33613 * 359.60871 * 19 18 17 22 22 C 1.36370 * 107.72896 * 0.23066 * 21 19 18 23 23 C 1.48456 * 126.25127 * 179.97438 * 22 21 19 24 24 N 1.33670 * 126.30912 * 180.02562 * 23 22 21 25 25 N 1.28574 * 109.85240 * 179.97438 * 24 23 22 26 26 N 1.28919 * 109.71788 * 359.97438 * 25 24 23 27 27 H 0.97002 * 126.43278 * 180.02562 * 26 25 24 28 28 N 1.31982 * 126.30199 * 359.74135 * 23 22 21 29 29 H 1.09001 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47323 * 299.99459 * 1 2 3 31 31 H 1.08994 * 109.47457 * 60.00209 * 1 2 3 32 32 H 1.08992 * 109.47086 * 240.00031 * 2 1 3 33 33 H 1.09003 * 109.46878 * 119.99672 * 2 1 3 34 34 H 0.96992 * 120.00259 * 179.97438 * 8 7 5 35 35 H 0.96993 * 119.99525 * 94.99953 * 13 3 2 36 36 H 0.96993 * 119.99707 * 0.02562 * 16 14 13 37 37 H 1.09001 * 109.47060 * 269.69123 * 20 19 18 38 38 H 1.09004 * 109.47073 * 29.68612 * 20 19 18 39 39 H 1.09000 * 109.47212 * 149.68695 * 20 19 18 40 40 H 1.07996 * 126.14093 * 180.19168 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3817 10 1 6.5548 -0.3501 -0.7601 11 1 6.3830 0.9224 -2.8171 12 1 6.5570 2.0738 -0.6900 13 7 1.6523 2.0975 1.2519 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4320 16 7 0.0786 3.2674 2.5184 17 6 -1.1864 3.8560 2.6382 18 7 -2.1139 3.8850 1.7126 19 7 -3.2265 4.5663 2.2204 20 6 -4.4780 4.8204 1.5023 21 6 -2.9520 4.9433 3.4852 22 6 -1.6902 4.5185 3.7805 23 6 -0.9759 4.7162 5.0668 24 7 0.2609 4.3008 5.3574 25 7 0.5650 4.6417 6.5592 26 7 -0.4222 5.2747 7.0947 27 1 -0.4529 5.6403 7.9927 28 7 -1.4432 5.3393 6.1323 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0610 -2.9498 35 1 2.2718 2.1231 1.9978 36 1 0.6984 3.2936 3.2641 37 1 -4.4082 5.7726 0.9765 38 1 -4.6531 4.0202 0.7831 39 1 -5.3036 4.8573 2.2130 40 1 -3.6124 5.4852 4.1459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604013675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:05 Heat of formation + Delta-G solvation = 185.809680 kcal Electronic energy + Delta-G solvation = -26670.735296 eV Core-core repulsion = 22754.347563 eV Total energy + Delta-G solvation = -3916.387733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.29869 -41.35205 -39.20859 -35.59746 -34.55366 -33.74486 -33.14126 -32.50852 -31.85055 -30.54285 -29.91203 -27.19265 -26.45094 -24.65801 -23.43077 -22.94614 -21.87342 -20.77760 -19.89156 -19.28672 -19.02888 -17.82518 -17.22791 -16.67690 -16.11162 -15.74694 -15.68659 -14.99081 -14.75514 -14.62178 -14.28404 -13.93098 -13.44797 -13.23574 -13.03391 -12.78701 -12.55405 -12.28675 -12.11683 -11.48617 -11.33288 -11.16386 -11.11069 -10.95677 -10.90466 -10.77785 -10.59094 -10.47279 -10.22415 -10.06856 -9.50973 -9.20398 -8.93022 -8.77622 -8.41724 -8.11471 -7.64531 -6.04268 -4.12819 0.68352 1.43416 1.93491 2.17708 2.26150 3.00756 3.18643 3.30689 3.37462 3.40654 3.75520 4.01724 4.16027 4.39443 4.55678 4.60942 5.01916 5.06740 5.14363 5.25575 5.27877 5.36222 5.43400 5.54508 5.96910 6.32810 6.51899 6.60580 6.74729 6.78724 6.95315 7.10352 7.23236 7.37222 7.50148 7.57794 7.70936 7.76373 7.97488 8.00522 8.17599 8.28540 8.84681 8.97896 9.39692 9.56623 11.01159 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.003481 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.797857 B = 8041.679344 C = 9528.943400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.718 5.718 14 C 0.686 3.314 15 O -0.549 6.549 16 N -0.653 5.653 17 C 0.371 3.629 18 N -0.267 5.267 19 N -0.365 5.365 20 C 0.104 3.896 21 C 0.126 3.874 22 C -0.210 4.210 23 C 0.306 3.694 24 N -0.309 5.309 25 N 0.016 4.984 26 N -0.303 5.303 27 H 0.468 0.532 28 N -0.310 5.310 29 H 0.019 0.981 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.420 0.580 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.903 10.749 17.010 24.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.370 5.370 14 C 0.386 3.614 15 O -0.422 6.422 16 N -0.308 5.308 17 C 0.109 3.891 18 N -0.096 5.096 19 N -0.143 5.143 20 C -0.037 4.037 21 C -0.029 4.029 22 C -0.229 4.229 23 C 0.025 3.975 24 N -0.187 5.187 25 N 0.019 4.981 26 N -0.150 5.150 27 H 0.322 0.678 28 N -0.154 5.154 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.219 0.781 36 H 0.258 0.742 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -14.507 10.201 14.966 23.206 hybrid contribution 1.389 0.559 1.894 2.415 sum -13.118 10.760 16.860 23.919 Atomic orbital electron populations 1.21811 0.98245 0.97774 1.01396 1.21960 0.92713 0.99883 1.02178 1.18717 0.93937 0.88859 0.79911 0.93182 1.21249 0.90713 1.38813 1.06252 0.91995 1.24868 0.98514 0.94895 0.95386 1.69900 1.35033 1.37717 1.09349 0.86456 0.84991 0.78418 0.77274 1.20598 1.21168 1.19864 1.45780 1.13106 1.58739 1.19349 1.16175 0.83975 0.79185 0.82109 1.90988 1.51265 1.62770 1.37145 1.42545 1.12788 1.57890 1.17615 1.18867 0.87125 0.92987 0.90124 1.78373 0.93384 1.19764 1.18033 1.48438 1.13818 1.42274 1.09816 1.21936 0.80352 1.03634 0.97824 1.22359 0.95419 0.97428 0.87662 1.16697 0.96207 1.18987 0.90966 1.22559 0.89427 0.92665 0.92856 1.75315 1.13944 1.23562 1.05926 1.78335 1.12839 1.04111 1.02776 1.50931 1.07849 1.39897 1.16286 0.67799 1.78829 1.11877 1.25869 0.98793 0.96140 0.94212 0.93138 0.88311 0.95064 0.92637 0.78114 0.74162 0.90279 0.88569 0.89289 0.79719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.22 5.45 -26.73 -0.15 -3.37 16 3 C 0.29 7.44 2.24 -69.08 -0.15 7.29 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 6 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.05 11.29 55.43 0.63 -24.42 16 9 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.72 -15.73 5.03 -59.81 -0.30 -16.03 16 14 C 0.69 14.95 7.10 -86.92 -0.62 14.33 16 15 O -0.55 -13.74 12.20 5.28 0.06 -13.68 16 16 N -0.65 -11.80 5.45 -15.33 -0.08 -11.89 16 17 C 0.37 6.38 7.81 -154.27 -1.20 5.18 16 18 N -0.27 -4.76 10.76 31.58 0.34 -4.42 16 19 N -0.37 -4.44 4.00 -67.91 -0.27 -4.71 16 20 C 0.10 0.74 11.45 59.85 0.69 1.42 16 21 C 0.13 1.32 11.41 -16.92 -0.19 1.13 16 22 C -0.21 -2.86 6.10 -105.18 -0.64 -3.50 16 23 C 0.31 3.95 8.14 -156.46 -1.27 2.67 16 24 N -0.31 -4.16 10.75 32.12 0.35 -3.81 16 25 N 0.02 0.18 13.42 60.35 0.81 0.99 16 26 N -0.30 -2.49 8.44 60.35 0.51 -1.98 16 27 H 0.47 1.58 8.96 -331.92 -2.98 -1.40 16 28 N -0.31 -3.28 12.89 32.14 0.41 -2.87 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.93 5.64 -51.93 -0.29 0.64 16 31 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 32 H 0.10 2.71 5.95 -51.93 -0.31 2.41 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.39 7.44 8.55 -40.82 -0.35 7.09 16 36 H 0.42 6.71 7.17 -40.82 -0.29 6.42 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.19 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 343.86 15.07 5.18 5.18 Total: -1.00 -36.00 343.86 -8.11 -44.11 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.10 Total: 8.21 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -3.62 Total: 9.40 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: 2.39 Total: -69.14 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.06 Total: -13.68 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.00 -8.11 -44.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.917 kcal (2) G-P(sol) polarization free energy of solvation -36.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds