Wall clock time and date at job start Tue Mar 31 2020 12:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.09000 * 109.46597 * 305.00200 * 3 2 1 5 5 C 1.50693 * 109.46984 * 184.99680 * 3 2 1 6 6 H 1.08004 * 120.00137 * 239.99588 * 5 3 2 7 7 C 1.37878 * 119.99841 * 60.00473 * 5 3 2 8 8 N 1.31515 * 120.00278 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00029 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47011 * 89.99517 * 9 7 5 11 11 H 1.48495 * 109.47464 * 209.99826 * 9 7 5 12 12 H 1.48504 * 109.47216 * 329.99973 * 9 7 5 13 13 N 1.46509 * 109.46924 * 64.99772 * 3 2 1 14 14 C 1.34773 * 119.99853 * 274.99809 * 13 3 2 15 15 O 1.21594 * 120.00395 * 0.02562 * 14 13 3 16 16 N 1.34783 * 119.99671 * 180.02562 * 14 13 3 17 17 C 1.40044 * 119.99843 * 180.02562 * 16 14 13 18 18 N 1.31067 * 126.02453 * 0.28578 * 17 16 14 19 19 N 1.40002 * 108.47731 * 180.14024 * 18 17 16 20 20 C 1.46506 * 125.83436 * 179.87830 * 19 18 17 21 21 C 1.34801 * 108.33613 * 359.60871 * 19 18 17 22 22 C 1.36370 * 107.72896 * 0.23066 * 21 19 18 23 23 C 1.48456 * 126.25127 * 179.97438 * 22 21 19 24 24 N 1.33670 * 126.30912 * 180.02562 * 23 22 21 25 25 N 1.28574 * 109.85240 * 179.97438 * 24 23 22 26 26 N 1.28919 * 109.71788 * 359.97438 * 25 24 23 27 27 H 0.97002 * 126.43278 * 180.02562 * 26 25 24 28 28 N 1.31982 * 126.30199 * 359.74135 * 23 22 21 29 29 H 1.09001 * 109.46742 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47323 * 299.99459 * 1 2 3 31 31 H 1.08994 * 109.47457 * 60.00209 * 1 2 3 32 32 H 1.08992 * 109.47086 * 240.00031 * 2 1 3 33 33 H 1.09003 * 109.46878 * 119.99672 * 2 1 3 34 34 H 0.96992 * 120.00259 * 179.97438 * 8 7 5 35 35 H 0.96993 * 119.99525 * 94.99953 * 13 3 2 36 36 H 0.96993 * 119.99707 * 0.02562 * 16 14 13 37 37 H 1.09001 * 109.47060 * 269.69123 * 20 19 18 38 38 H 1.09004 * 109.47073 * 29.68612 * 20 19 18 39 39 H 1.09000 * 109.47212 * 149.68695 * 20 19 18 40 40 H 1.07996 * 126.14093 * 180.19168 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3817 10 1 6.5548 -0.3501 -0.7601 11 1 6.3830 0.9224 -2.8171 12 1 6.5570 2.0738 -0.6900 13 7 1.6523 2.0975 1.2519 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4320 16 7 0.0786 3.2674 2.5184 17 6 -1.1864 3.8560 2.6382 18 7 -2.1139 3.8850 1.7126 19 7 -3.2265 4.5663 2.2204 20 6 -4.4780 4.8204 1.5023 21 6 -2.9520 4.9433 3.4852 22 6 -1.6902 4.5185 3.7805 23 6 -0.9759 4.7162 5.0668 24 7 0.2609 4.3008 5.3574 25 7 0.5650 4.6417 6.5592 26 7 -0.4222 5.2747 7.0947 27 1 -0.4529 5.6403 7.9927 28 7 -1.4432 5.3393 6.1323 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0610 -2.9498 35 1 2.2718 2.1231 1.9978 36 1 0.6984 3.2936 3.2641 37 1 -4.4082 5.7726 0.9765 38 1 -4.6531 4.0202 0.7831 39 1 -5.3036 4.8573 2.2130 40 1 -3.6124 5.4852 4.1459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604013675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:03 Heat of formation + Delta-G solvation = 157.624650 kcal Electronic energy + Delta-G solvation = -26671.957490 eV Core-core repulsion = 22754.347563 eV Total energy + Delta-G solvation = -3917.609928 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.145 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -44.15241 -42.42621 -40.86332 -37.31316 -35.97507 -34.84637 -34.31222 -33.99009 -33.25717 -32.24874 -30.94560 -28.96586 -27.57154 -25.49481 -25.12389 -24.20263 -23.28771 -21.85925 -21.46102 -21.02102 -19.96366 -19.45897 -18.32277 -17.77052 -17.53917 -17.25085 -16.85646 -16.62842 -16.18142 -15.86225 -15.52557 -15.26393 -14.98212 -14.52976 -14.36935 -14.14420 -13.69455 -13.45268 -13.38946 -13.14778 -13.11352 -12.85758 -12.63911 -12.23559 -12.16042 -12.04227 -11.99925 -11.80557 -11.76962 -11.72674 -11.50712 -11.02973 -10.91687 -10.49855 -9.93521 -9.60939 -9.13312 -8.12222 -6.29003 -0.13929 0.57450 1.04176 1.18004 1.34828 1.47941 1.48615 1.59213 1.91442 1.96870 2.44891 2.54329 2.78842 3.13347 3.17078 3.46809 3.78549 3.94885 4.28918 4.44289 4.50648 4.53237 4.54248 4.60622 4.63400 4.76542 4.81462 4.85497 5.10666 5.26592 5.48136 5.55222 5.64877 5.66392 5.76924 5.79068 5.89103 6.01021 6.12076 6.20764 6.69448 6.78814 7.13482 7.30503 7.39063 7.75855 8.93483 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.014298 B = 0.003481 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.797857 B = 8041.679344 C = 9528.943400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.298 3.702 4 H 0.000 1.000 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.972 3.028 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.715 5.715 14 C 0.688 3.312 15 O -0.585 6.585 16 N -0.644 5.644 17 C 0.343 3.657 18 N -0.325 5.325 19 N -0.361 5.361 20 C 0.092 3.908 21 C 0.155 3.845 22 C -0.225 4.225 23 C 0.294 3.706 24 N -0.342 5.342 25 N 0.009 4.991 26 N -0.272 5.272 27 H 0.488 0.512 28 N -0.298 5.298 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.265 0.735 35 H 0.400 0.600 36 H 0.428 0.572 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 12.000 19.630 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.195 3.805 4 H 0.018 0.982 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.368 5.368 14 C 0.387 3.613 15 O -0.461 6.461 16 N -0.299 5.299 17 C 0.082 3.918 18 N -0.154 5.154 19 N -0.140 5.140 20 C -0.046 4.046 21 C 0.000 4.000 22 C -0.243 4.243 23 C 0.013 3.987 24 N -0.220 5.220 25 N 0.013 4.987 26 N -0.124 5.124 27 H 0.347 0.653 28 N -0.143 5.143 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.269 0.731 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.154 0.846 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -15.262 11.483 17.662 26.013 hybrid contribution 1.446 0.294 1.181 1.890 sum -13.816 11.777 18.843 26.165 Atomic orbital electron populations 1.21616 0.97130 0.98760 1.00042 1.21805 0.93563 0.99224 1.01332 1.18297 0.93538 0.88792 0.79923 0.98214 1.21564 0.91234 1.38992 1.06797 0.91052 1.25749 1.03314 0.94349 0.94920 1.70050 1.37024 1.38318 1.09848 0.85354 0.79067 0.78835 0.77108 1.19619 1.21205 1.19049 1.45442 1.13786 1.58914 1.18657 1.16227 0.83356 0.79019 0.82694 1.90956 1.52249 1.64099 1.38821 1.42187 1.13862 1.57442 1.16423 1.19126 0.86618 0.94262 0.91775 1.78190 0.95403 1.21617 1.20172 1.48757 1.13524 1.41074 1.10623 1.22389 0.79573 1.03724 0.98965 1.23070 0.94619 0.95318 0.87016 1.16845 0.97353 1.19576 0.90552 1.22484 0.89485 0.93522 0.93192 1.75282 1.14776 1.24950 1.06950 1.78284 1.13356 1.04636 1.02405 1.50965 1.06608 1.38035 1.16746 0.65278 1.78766 1.12045 1.25133 0.98382 0.93790 0.94436 0.95560 0.90675 0.94091 0.92582 0.76518 0.73128 0.88868 0.89914 0.84592 0.74610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.51 71.98 0.61 -5.12 16 2 C -0.12 -6.21 5.45 30.60 0.17 -6.05 16 3 C 0.30 16.04 2.24 44.24 0.10 16.14 16 4 H 0.00 0.00 7.58 -2.39 -0.02 -0.02 16 5 C -0.55 -29.94 8.73 25.60 0.22 -29.71 16 6 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.91 -53.28 11.29 21.45 0.24 -53.04 16 9 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 13 N -0.71 -32.38 5.03 -461.39 -2.32 -34.69 16 14 C 0.69 31.20 7.10 179.05 1.27 32.47 16 15 O -0.59 -30.89 12.20 -4.01 -0.05 -30.94 16 16 N -0.64 -23.98 5.45 -320.68 -1.75 -25.72 16 17 C 0.34 11.95 7.81 133.64 1.04 12.99 16 18 N -0.32 -11.79 10.76 -53.99 -0.58 -12.37 16 19 N -0.36 -8.21 4.00 -368.78 -1.48 -9.69 16 20 C 0.09 1.10 11.45 127.77 1.46 2.57 16 21 C 0.15 2.80 11.41 83.80 0.96 3.75 16 22 C -0.22 -5.85 6.10 -20.23 -0.12 -5.97 16 23 C 0.29 7.11 8.14 137.43 1.12 8.23 16 24 N -0.34 -8.90 10.75 -52.28 -0.56 -9.46 16 25 N 0.01 0.19 13.42 37.02 0.50 0.69 16 26 N -0.27 -3.75 8.44 37.02 0.31 -3.43 16 27 H 0.49 1.77 8.96 -340.35 -3.05 -1.28 16 28 N -0.30 -5.48 12.89 -52.24 -0.67 -6.15 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 31 H 0.03 1.36 7.84 -2.39 -0.02 1.34 16 32 H 0.07 4.27 5.95 -2.39 -0.01 4.26 16 33 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.26 14.61 8.31 -92.71 -0.77 13.83 16 35 H 0.40 15.69 8.55 -92.71 -0.79 14.89 16 36 H 0.43 14.04 7.17 -92.71 -0.67 13.38 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.24 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -82.37 343.86 -0.42 -82.79 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -3.37 Total: 26.23 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: 7.28 Total: 30.68 kcal Atomic # 7 Polarization: -147.56 SS G_CDS: -6.31 Total: -153.87 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.05 Total: -30.94 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -82.37 -0.42 -82.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.412 kcal (2) G-P(sol) polarization free energy of solvation -82.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds