Wall clock time and date at job start Tue Mar 31 2020 12:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47194 * 2 1 4 4 H 1.08997 * 109.47495 * 305.00229 * 3 2 1 5 5 C 1.52996 * 109.47179 * 184.99643 * 3 2 1 6 6 N 1.46502 * 109.47309 * 174.99724 * 5 3 2 7 7 C 1.34769 * 120.00373 * 180.02562 * 6 5 3 8 8 O 1.21587 * 119.99969 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00571 * 180.02562 * 7 6 5 10 10 C 1.39934 * 120.00528 * 175.38136 * 9 7 6 11 11 C 1.38866 * 120.07059 * 214.81353 * 10 9 7 12 12 C 1.38121 * 119.92846 * 179.76838 * 11 10 9 13 13 C 1.38280 * 120.06761 * 0.50696 * 12 11 10 14 14 C 1.50703 * 119.92631 * 179.72388 * 13 12 11 15 15 C 1.50694 * 109.47220 * 270.01992 * 14 13 12 16 16 H 1.08004 * 119.99840 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00320 * 179.97438 * 15 14 13 18 18 N 1.31506 * 119.99667 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00073 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47371 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47449 * 120.00319 * 19 17 15 22 22 H 1.48504 * 109.47118 * 240.00460 * 19 17 15 23 23 C 1.38277 * 120.14308 * 359.74382 * 13 12 11 24 24 C 1.38112 * 120.07143 * 0.02562 * 23 13 12 25 25 C 1.50702 * 109.46698 * 65.00324 * 3 2 1 26 26 O 1.20825 * 120.00627 * 359.97438 * 25 3 2 27 27 O 1.34235 * 119.99784 * 180.02562 * 25 3 2 28 28 H 1.08997 * 109.46787 * 299.99823 * 1 2 3 29 29 H 1.08999 * 109.47113 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46971 * 59.99739 * 1 2 3 31 31 H 1.09004 * 109.47378 * 120.00304 * 2 1 3 32 32 H 1.08997 * 109.46787 * 240.00177 * 2 1 3 33 33 H 1.08995 * 109.47722 * 295.00778 * 5 3 2 34 34 H 1.09000 * 109.46906 * 55.00783 * 5 3 2 35 35 H 0.96999 * 119.99769 * 0.02562 * 6 5 3 36 36 H 0.97005 * 119.99337 * 355.37703 * 9 7 6 37 37 H 1.07992 * 120.03396 * 0.02562 * 11 10 9 38 38 H 1.08002 * 119.96330 * 180.25184 * 12 11 10 39 39 H 1.09006 * 109.47176 * 30.02070 * 14 13 12 40 40 H 1.09004 * 109.47139 * 150.01973 * 14 13 12 41 41 H 0.97001 * 120.00063 * 179.97438 * 18 17 15 42 42 H 1.08004 * 119.96618 * 180.02562 * 23 13 12 43 43 H 1.07997 * 120.03799 * 179.97438 * 24 23 13 44 44 H 0.96704 * 117.00040 * 179.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1256 6 7 4.0433 2.8238 -0.2458 7 6 5.3623 3.0712 -0.3694 8 8 6.1552 2.1495 -0.3816 9 7 5.8026 4.3403 -0.4794 10 6 7.1765 4.6041 -0.5104 11 6 7.6768 5.7585 0.0775 12 6 9.0340 6.0136 0.0493 13 6 9.8930 5.1262 -0.5725 14 6 11.3725 5.4109 -0.6068 15 6 11.7024 6.2067 -1.8431 16 1 10.9190 6.4796 -2.5347 17 6 13.0042 6.5876 -2.0909 18 7 13.9580 6.2558 -1.2486 19 14 13.4130 7.5748 -3.6231 20 1 12.1718 7.8176 -4.4014 21 1 14.0119 8.8752 -3.2290 22 1 14.3803 6.8168 -4.4569 23 6 9.3974 3.9784 -1.1633 24 6 8.0419 3.7152 -1.1345 25 6 1.6414 2.1161 1.2878 26 8 1.0134 1.5054 2.1199 27 8 1.9831 3.3951 1.5099 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 4.0030 0.9835 0.7596 34 1 3.8571 0.8801 -1.0113 35 1 3.4107 3.5591 -0.2364 36 1 5.1670 5.0708 -0.5371 37 1 7.0059 6.4539 0.5597 38 1 9.4241 6.9092 0.5099 39 1 11.6533 5.9816 0.2785 40 1 11.9232 4.4703 -0.6224 41 1 14.8739 6.5234 -1.4230 42 1 10.0709 3.2871 -1.6479 43 1 7.6553 2.8188 -1.5965 44 1 1.7047 3.7843 2.3503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605035047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:53 Heat of formation + Delta-G solvation = -109.715186 kcal Electronic energy + Delta-G solvation = -25757.368172 eV Core-core repulsion = 21867.120360 eV Total energy + Delta-G solvation = -3890.247812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.14786 -40.34979 -38.37118 -36.98468 -36.31188 -34.78606 -33.95451 -32.93442 -30.63123 -30.22980 -29.48947 -26.60632 -25.00596 -23.81166 -22.97909 -22.28645 -21.13519 -20.84898 -20.12506 -18.86992 -18.23357 -17.58064 -17.41306 -16.28291 -16.13869 -15.60152 -15.51447 -14.87467 -14.68246 -14.58837 -14.19385 -14.14228 -14.07862 -13.58434 -13.05541 -12.98005 -12.75773 -12.71925 -12.51869 -12.23626 -11.96251 -11.77598 -11.66775 -11.51817 -11.35094 -11.25117 -10.82525 -10.79164 -10.58623 -10.37956 -10.12184 -9.83302 -9.42495 -9.34991 -9.19031 -8.39845 -8.22568 -7.31950 -6.00790 -4.04572 1.66761 1.99664 2.13026 2.43717 2.53612 3.18297 3.31100 3.38681 3.43723 3.92347 4.03465 4.28126 4.37726 4.41838 4.61719 4.76554 4.83319 4.97219 5.19601 5.23120 5.32537 5.33371 5.47925 5.51050 5.63872 5.65844 5.76443 5.98788 6.07020 6.09729 6.11841 6.21642 6.25932 6.59649 6.72404 6.99483 7.08375 7.22308 7.27306 7.37647 7.56176 7.77747 7.89112 7.92205 7.95322 8.36290 8.51428 9.01137 9.58955 11.08803 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.035802 B = 0.001992 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.892493 B =14053.793960 C =14287.088438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.117 0.883 5 C 0.147 3.853 6 N -0.745 5.745 7 C 0.703 3.297 8 O -0.573 6.573 9 N -0.680 5.680 10 C 0.120 3.880 11 C -0.145 4.145 12 C -0.109 4.109 13 C -0.044 4.044 14 C 0.047 3.953 15 C -0.509 4.509 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.109 4.109 24 C -0.116 4.116 25 C 0.483 3.517 26 O -0.506 6.506 27 O -0.516 6.516 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.402 0.598 36 H 0.401 0.599 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.812 -7.387 3.090 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.135 0.865 5 C 0.023 3.977 6 N -0.403 5.403 7 C 0.403 3.597 8 O -0.449 6.449 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.165 4.165 12 C -0.128 4.128 13 C -0.045 4.045 14 C 0.010 3.990 15 C -0.547 4.547 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.128 4.128 24 C -0.136 4.136 25 C 0.325 3.675 26 O -0.394 6.394 27 O -0.329 6.329 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.237 0.763 36 H 0.236 0.764 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.148 0.852 44 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -27.994 -8.601 2.989 29.438 hybrid contribution -0.555 1.625 -0.237 1.733 sum -28.549 -6.976 2.752 29.518 Atomic orbital electron populations 1.21924 0.94697 1.02666 1.02585 1.21406 0.97092 0.92073 1.03933 1.21504 0.97354 0.98435 0.93906 0.86524 1.21117 0.89581 0.83237 1.03808 1.45089 1.06199 1.08837 1.80215 1.15884 0.82346 0.83461 0.78010 1.90953 1.53894 1.43214 1.56867 1.42408 1.06521 1.06887 1.76855 1.17298 0.81172 0.97257 1.01544 1.20715 0.95915 0.97697 1.02205 1.20859 0.91783 0.99644 1.00475 1.20703 0.98993 0.92121 0.92661 1.18355 0.85181 0.97638 0.97791 1.21117 0.93143 1.33811 1.06662 0.92398 1.25022 0.96407 0.96249 0.96779 1.69968 1.00703 1.46445 1.36226 0.86489 0.78400 0.79784 0.83089 1.19685 1.21010 1.20983 1.21015 0.94192 0.97714 0.99859 1.21151 0.93236 0.99787 0.99468 1.23392 0.75527 0.79669 0.88939 1.90712 1.37206 1.64970 1.46490 1.84456 1.74698 1.28242 1.45462 0.91120 0.92066 0.92881 0.90351 0.89787 0.90814 0.89506 0.76273 0.76431 0.86923 0.86076 0.95346 0.95303 0.92944 0.86155 0.85245 0.72738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.65 37.16 0.36 -0.50 16 2 C -0.11 -0.54 5.05 -26.73 -0.14 -0.68 16 3 C -0.09 -0.47 2.37 -91.77 -0.22 -0.69 16 4 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 5 C 0.15 1.08 5.05 -4.04 -0.02 1.06 16 6 N -0.75 -6.32 5.07 -65.23 -0.33 -6.65 16 7 C 0.70 9.22 8.41 -86.92 -0.73 8.49 16 8 O -0.57 -9.97 13.78 5.29 0.07 -9.90 16 9 N -0.68 -8.50 5.34 -14.23 -0.08 -8.58 16 10 C 0.12 1.99 6.30 -83.69 -0.53 1.46 16 11 C -0.14 -2.37 9.97 -39.39 -0.39 -2.76 16 12 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 13 C -0.04 -0.98 5.07 -104.59 -0.53 -1.51 16 14 C 0.05 1.23 5.10 -29.04 -0.15 1.08 16 15 C -0.51 -14.34 9.09 -34.44 -0.31 -14.65 16 16 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.11 -2.27 9.69 -39.61 -0.38 -2.65 16 24 C -0.12 -2.19 8.70 -39.39 -0.34 -2.53 16 25 C 0.48 3.21 7.34 36.01 0.26 3.48 16 26 O -0.51 -4.83 14.73 -18.75 -0.28 -5.11 16 27 O -0.52 -2.39 11.42 -39.27 -0.45 -2.84 16 28 H 0.07 0.50 5.96 -51.93 -0.31 0.19 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.48 7.96 -51.93 -0.41 0.07 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 2.42 6.96 -40.82 -0.28 2.14 16 36 H 0.40 3.51 8.84 -40.82 -0.36 3.15 16 37 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 43 H 0.13 2.44 6.22 -52.49 -0.33 2.11 16 44 H 0.41 0.59 9.10 45.56 0.41 1.01 16 LS Contribution 371.71 15.07 5.60 5.60 Total: -1.00 -35.70 371.71 -8.81 -44.51 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.46 Total: 3.60 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -3.60 Total: -11.38 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.33 Total: -41.08 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.65 Total: -17.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.70 -8.81 -44.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605035047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.207 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds