Wall clock time and date at job start Tue Mar 31 2020 12:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47182 * 120.00081 * 9 7 5 12 12 H 1.48499 * 109.47164 * 240.00051 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39946 * 120.00246 * 175.37992 * 16 14 13 18 18 C 1.38862 * 120.07206 * 214.81634 * 17 16 14 19 19 C 1.38113 * 119.93034 * 179.76679 * 18 17 16 20 20 C 1.38284 * 120.06849 * 0.50598 * 19 18 17 21 21 C 1.50699 * 119.93109 * 179.76554 * 20 19 18 22 22 H 1.08992 * 109.47496 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.46875 * 299.98210 * 21 20 19 24 24 C 1.50707 * 109.47128 * 59.97824 * 21 20 19 25 25 O 1.20821 * 119.99892 * 0.02562 * 24 21 20 26 26 O 1.34227 * 119.99819 * 180.02562 * 24 21 20 27 27 C 1.38275 * 120.14130 * 359.74704 * 20 19 18 28 28 C 1.38121 * 120.06968 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 30 30 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 32 32 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 33 33 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 34 34 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 36 36 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 37 37 H 1.07997 * 120.03860 * 359.97438 * 18 17 16 38 38 H 1.08003 * 119.96602 * 180.25399 * 19 18 17 39 39 H 1.09007 * 109.46766 * 179.97438 * 23 21 20 40 40 H 1.08998 * 109.47096 * 299.99454 * 23 21 20 41 41 H 1.08993 * 109.47293 * 60.00197 * 23 21 20 42 42 H 0.96703 * 116.99329 * 180.02562 * 26 24 21 43 43 H 1.08003 * 119.96967 * 179.97438 * 27 20 19 44 44 H 1.07996 * 120.03604 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.5987 1.5463 0.1940 11 1 6.3990 1.6167 2.6100 12 1 6.4971 -0.5174 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2122 3.7853 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1151 4.2403 -4.0532 20 6 -3.7719 4.7915 -2.9683 21 6 -5.1663 5.3392 -3.1323 22 1 -5.5185 5.7284 -2.1771 23 6 -5.1534 6.4649 -4.1684 24 6 -6.0865 4.2396 -3.5966 25 8 -5.6544 3.1256 -3.7755 26 8 -7.3860 4.4981 -3.8114 27 6 -3.1522 4.8409 -1.7332 28 6 -1.8747 4.3390 -1.5794 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0619 2.9494 35 1 2.2718 2.1232 -1.9978 36 1 0.7249 3.3614 -3.2365 37 1 -1.3211 3.3160 -4.7560 38 1 -3.6018 4.2032 -5.0166 39 1 -6.1621 6.8607 -4.2874 40 1 -4.4879 7.2602 -3.8326 41 1 -4.8014 6.0756 -5.1236 42 1 -7.9369 3.7608 -4.1082 43 1 -3.6676 5.2724 -0.8878 44 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609913010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:56 Heat of formation + Delta-G solvation = -101.102784 kcal Electronic energy + Delta-G solvation = -26611.828680 eV Core-core repulsion = 22721.954331 eV Total energy + Delta-G solvation = -3889.874350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82579 -40.07713 -38.56785 -36.38273 -35.69811 -34.62976 -33.33242 -32.29529 -30.85958 -30.77186 -28.44605 -26.79772 -25.31778 -23.40478 -22.89495 -22.41764 -20.97045 -20.15987 -19.51783 -18.31276 -18.09243 -17.45615 -16.84104 -16.20396 -15.90812 -15.49127 -15.19441 -14.99962 -14.44975 -14.22070 -13.95848 -13.71599 -13.43036 -13.29602 -13.05004 -12.74500 -12.65638 -12.51851 -12.04534 -11.98922 -11.68304 -11.56070 -11.41010 -11.25672 -11.04461 -10.95414 -10.85946 -10.58699 -10.30729 -10.18229 -9.97281 -9.57412 -9.31778 -9.03457 -8.74447 -8.51787 -8.00693 -7.66800 -6.13662 -4.23024 1.34501 1.58021 2.01176 2.82750 3.20374 3.22982 3.31259 3.34251 3.71543 4.07119 4.30935 4.34015 4.61392 4.80370 4.92935 5.05050 5.10322 5.17529 5.18704 5.38197 5.43244 5.51149 5.71681 5.79368 5.85044 6.13078 6.25708 6.37084 6.43086 6.50142 6.52569 6.64716 6.68807 6.76690 7.03807 7.13755 7.27724 7.36547 7.38989 7.46595 7.64020 7.68030 7.86475 7.98380 8.18351 8.72925 8.84207 9.25166 9.45662 10.91701 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031381 B = 0.002439 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.047293 B =11475.118941 C =11803.585476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.286 3.714 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.719 5.719 14 C 0.692 3.308 15 O -0.575 6.575 16 N -0.698 5.698 17 C 0.189 3.811 18 C -0.158 4.158 19 C -0.067 4.067 20 C -0.116 4.116 21 C -0.033 4.033 22 H 0.114 0.886 23 C -0.140 4.140 24 C 0.477 3.523 25 O -0.500 6.500 26 O -0.519 6.519 27 C -0.087 4.087 28 C -0.122 4.122 29 H 0.038 0.962 30 H 0.021 0.979 31 H 0.049 0.951 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.264 0.736 35 H 0.386 0.614 36 H 0.402 0.598 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.408 0.592 43 H 0.123 0.877 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.709 11.071 -13.860 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.184 3.816 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.452 6.452 16 N -0.346 5.346 17 C 0.093 3.907 18 C -0.179 4.179 19 C -0.086 4.086 20 C -0.117 4.117 21 C -0.052 4.052 22 H 0.132 0.868 23 C -0.198 4.198 24 C 0.318 3.682 25 O -0.386 6.386 26 O -0.332 6.332 27 C -0.105 4.105 28 C -0.143 4.143 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.218 0.782 36 H 0.236 0.764 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.267 0.733 43 H 0.141 0.859 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.911 10.861 -12.649 23.046 hybrid contribution 1.220 -0.725 -0.800 1.629 sum -14.690 10.137 -13.449 22.348 Atomic orbital electron populations 1.21812 0.98223 0.97944 1.01297 1.21952 0.92713 0.99836 1.02203 1.18731 0.94005 0.88925 0.79923 0.93184 1.21256 0.90651 1.39006 1.06293 0.92056 1.24881 0.98625 0.94811 0.95383 1.69913 1.35033 1.37567 1.09356 0.86392 0.84816 0.77771 0.78096 1.19786 1.20876 1.20880 1.45842 1.13427 1.58337 1.19340 1.16114 0.83661 0.78693 0.82235 1.90887 1.51675 1.64748 1.37898 1.42895 1.12158 1.61103 1.18426 1.17597 0.84944 0.94034 0.94153 1.20793 0.95663 1.04615 0.96792 1.20517 0.93491 0.96650 0.97938 1.19104 0.94004 1.04034 0.94540 1.19830 0.90428 0.92918 1.02055 0.86762 1.21805 1.03213 0.96946 0.97798 1.23534 0.81085 0.89714 0.73841 1.90777 1.76382 1.24466 1.46938 1.84524 1.21889 1.46526 1.80222 1.20858 0.94950 0.98954 0.95778 1.21374 0.95446 0.97533 0.99926 0.94288 0.95996 0.93151 0.95115 0.88268 0.92585 0.78244 0.76361 0.85946 0.86551 0.91140 0.90599 0.91941 0.73311 0.85923 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.52 37.16 0.32 -2.81 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.28 16 3 C 0.29 7.12 2.24 -69.08 -0.15 6.97 16 4 H 0.05 1.44 7.57 -51.93 -0.39 1.05 16 5 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.54 11.29 55.43 0.63 -23.91 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.72 -14.66 5.02 -59.81 -0.30 -14.96 16 14 C 0.69 13.76 6.99 -86.92 -0.61 13.15 16 15 O -0.57 -13.31 10.92 5.29 0.06 -13.26 16 16 N -0.70 -10.77 5.34 -14.22 -0.08 -10.84 16 17 C 0.19 2.89 6.30 -83.69 -0.53 2.36 16 18 C -0.16 -2.04 9.97 -39.40 -0.39 -2.44 16 19 C -0.07 -0.82 7.92 -39.61 -0.31 -1.13 16 20 C -0.12 -1.36 4.40 -104.59 -0.46 -1.82 16 21 C -0.03 -0.29 3.00 -92.92 -0.28 -0.57 16 22 H 0.11 0.81 7.87 -51.93 -0.41 0.41 16 23 C -0.14 -0.91 8.94 37.16 0.33 -0.58 16 24 C 0.48 4.84 7.49 36.01 0.27 5.11 16 25 O -0.50 -7.01 15.86 -18.75 -0.30 -7.30 16 26 O -0.52 -3.73 13.33 -39.25 -0.52 -4.25 16 27 C -0.09 -1.13 9.66 -39.61 -0.38 -1.51 16 28 C -0.12 -1.94 8.70 -39.39 -0.34 -2.28 16 29 H 0.04 0.89 5.66 -51.93 -0.29 0.60 16 30 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 31 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.39 6.75 8.56 -40.82 -0.35 6.40 16 36 H 0.40 4.79 8.84 -40.82 -0.36 4.43 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.24 7.51 -52.48 -0.39 0.84 16 39 H 0.07 0.38 8.11 -51.92 -0.42 -0.04 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 42 H 0.41 1.39 9.10 45.56 0.41 1.81 16 43 H 0.12 1.31 7.94 -52.48 -0.42 0.89 16 44 H 0.15 2.64 6.22 -52.49 -0.33 2.31 16 LS Contribution 363.32 15.07 5.48 5.48 Total: -1.00 -33.32 363.32 -8.42 -41.74 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -5.28 Total: 13.25 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.08 Total: -1.36 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.25 Total: -49.71 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.76 Total: -24.81 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.32 -8.42 -41.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.359 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds