Wall clock time and date at job start Tue Mar 31 2020 12:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47111 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47182 * 120.00081 * 9 7 5 12 12 H 1.48499 * 109.47164 * 240.00051 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39946 * 120.00246 * 175.37992 * 16 14 13 18 18 C 1.38862 * 120.07206 * 214.81634 * 17 16 14 19 19 C 1.38113 * 119.93034 * 179.76679 * 18 17 16 20 20 C 1.38284 * 120.06849 * 0.50598 * 19 18 17 21 21 C 1.50699 * 119.93109 * 179.76554 * 20 19 18 22 22 H 1.08992 * 109.47496 * 179.97438 * 21 20 19 23 23 C 1.53005 * 109.46875 * 299.98210 * 21 20 19 24 24 C 1.50707 * 109.47128 * 59.97824 * 21 20 19 25 25 O 1.20821 * 119.99892 * 0.02562 * 24 21 20 26 26 O 1.34227 * 119.99819 * 180.02562 * 24 21 20 27 27 C 1.38275 * 120.14130 * 359.74704 * 20 19 18 28 28 C 1.38121 * 120.06968 * 359.97438 * 27 20 19 29 29 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 30 30 H 1.09009 * 109.47364 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 32 32 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 33 33 H 1.08995 * 109.47360 * 120.00575 * 2 1 3 34 34 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 35 35 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 36 36 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 37 37 H 1.07997 * 120.03860 * 359.97438 * 18 17 16 38 38 H 1.08003 * 119.96602 * 180.25399 * 19 18 17 39 39 H 1.09007 * 109.46766 * 179.97438 * 23 21 20 40 40 H 1.08998 * 109.47096 * 299.99454 * 23 21 20 41 41 H 1.08993 * 109.47293 * 60.00197 * 23 21 20 42 42 H 0.96703 * 116.99329 * 180.02562 * 26 24 21 43 43 H 1.08003 * 119.96967 * 179.97438 * 27 20 19 44 44 H 1.07996 * 120.03604 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.5987 1.5463 0.1940 11 1 6.3990 1.6167 2.6100 12 1 6.4971 -0.5174 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2122 3.7853 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1151 4.2403 -4.0532 20 6 -3.7719 4.7915 -2.9683 21 6 -5.1663 5.3392 -3.1323 22 1 -5.5185 5.7284 -2.1771 23 6 -5.1534 6.4649 -4.1684 24 6 -6.0865 4.2396 -3.5966 25 8 -5.6544 3.1256 -3.7755 26 8 -7.3860 4.4981 -3.8114 27 6 -3.1522 4.8409 -1.7332 28 6 -1.8747 4.3390 -1.5794 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8294 -0.0619 2.9494 35 1 2.2718 2.1232 -1.9978 36 1 0.7249 3.3614 -3.2365 37 1 -1.3211 3.3160 -4.7560 38 1 -3.6018 4.2032 -5.0166 39 1 -6.1621 6.8607 -4.2874 40 1 -4.4879 7.2602 -3.8326 41 1 -4.8014 6.0756 -5.1236 42 1 -7.9369 3.7608 -4.1082 43 1 -3.6676 5.2724 -0.8878 44 1 -1.3910 4.3782 -0.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609913010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:54 Heat of formation + Delta-G solvation = -124.039955 kcal Electronic energy + Delta-G solvation = -26612.823311 eV Core-core repulsion = 22721.954331 eV Total energy + Delta-G solvation = -3890.868980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79187 -41.31527 -39.74996 -37.42087 -36.97252 -36.03846 -34.60146 -34.01737 -32.59368 -31.86491 -29.66972 -28.56282 -26.04189 -25.09964 -24.17182 -23.50963 -22.35922 -21.36957 -21.16515 -19.78590 -18.93904 -18.76634 -17.87940 -17.64585 -17.05796 -16.82586 -16.56676 -16.28352 -16.01824 -15.59566 -15.04072 -14.94359 -14.57459 -14.45260 -14.29155 -14.22012 -13.91373 -13.53274 -13.36567 -13.18435 -13.12926 -12.85892 -12.72475 -12.70648 -12.47862 -12.34802 -12.12653 -12.06612 -11.93912 -11.62599 -11.39421 -11.23400 -11.04821 -10.82951 -10.54595 -9.80644 -9.70684 -8.92205 -8.15934 -6.33003 0.30049 0.52651 1.25305 1.44651 1.45628 1.57232 1.80899 2.10030 2.31372 2.43090 2.95644 3.13779 3.47376 3.55800 3.88164 4.08591 4.18617 4.25167 4.47049 4.48463 4.49606 4.56090 4.64361 4.68980 4.76525 4.91912 4.98499 5.04382 5.10819 5.22637 5.29138 5.36968 5.42083 5.44036 5.53567 5.60144 5.62524 5.64722 5.67898 5.77044 5.87978 6.13430 6.16870 6.30237 6.75359 7.03796 7.26565 7.35617 7.73164 8.89818 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031381 B = 0.002439 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.047293 B =11475.118941 C =11803.585476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.120 4.120 3 C 0.296 3.704 4 H 0.000 1.000 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.715 5.715 14 C 0.692 3.308 15 O -0.612 6.612 16 N -0.680 5.680 17 C 0.161 3.839 18 C -0.151 4.151 19 C -0.071 4.071 20 C -0.107 4.107 21 C -0.035 4.035 22 H 0.134 0.866 23 C -0.135 4.135 24 C 0.484 3.516 25 O -0.545 6.545 26 O -0.509 6.509 27 C -0.092 4.092 28 C -0.147 4.147 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.025 0.975 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.419 0.581 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.426 0.574 43 H 0.142 0.858 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.386 12.067 -16.289 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.193 3.807 4 H 0.018 0.982 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.205 1.205 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.492 6.492 16 N -0.329 5.329 17 C 0.066 3.934 18 C -0.172 4.172 19 C -0.089 4.089 20 C -0.108 4.108 21 C -0.054 4.054 22 H 0.152 0.848 23 C -0.192 4.192 24 C 0.327 3.673 25 O -0.435 6.435 26 O -0.322 6.322 27 C -0.111 4.111 28 C -0.168 4.168 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.257 0.743 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.288 0.712 43 H 0.159 0.841 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.619 11.902 -15.158 25.449 hybrid contribution 1.231 -0.951 -0.084 1.558 sum -15.388 10.951 -15.243 24.270 Atomic orbital electron populations 1.21632 0.97227 0.98779 1.00065 1.21800 0.93459 0.99406 1.01272 1.18275 0.93511 0.88727 0.80215 0.98179 1.21585 0.91243 1.38854 1.06693 0.90945 1.25765 1.03309 0.94400 0.95024 1.70062 1.36998 1.38363 1.09916 0.85307 0.79094 0.77782 0.78193 1.18433 1.21051 1.20521 1.45448 1.14229 1.58547 1.18554 1.16199 0.82977 0.78631 0.82955 1.90872 1.52659 1.65977 1.39664 1.42533 1.12944 1.60067 1.17373 1.17794 0.84956 0.95572 0.95118 1.21030 0.95956 1.03855 0.96332 1.20845 0.93178 0.95933 0.98963 1.19428 0.95326 1.02405 0.93658 1.19946 0.88362 0.93133 1.03963 0.84794 1.21807 1.04482 0.96086 0.96872 1.23680 0.81824 0.89072 0.72678 1.90773 1.77304 1.26221 1.49218 1.84479 1.20802 1.47347 1.79578 1.21064 0.94041 0.98722 0.97237 1.21271 0.96950 0.99582 0.98954 0.94296 0.93951 0.95540 0.94123 0.90853 0.92587 0.76376 0.74271 0.83606 0.84632 0.89548 0.89806 0.91921 0.71242 0.84062 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.52 71.98 0.61 -5.05 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 3 C 0.30 15.25 2.24 44.25 0.10 15.35 16 4 H 0.00 0.02 7.57 -2.39 -0.02 0.00 16 5 C -0.55 -28.66 8.73 25.60 0.22 -28.44 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.02 0.81 5.29 84.65 0.45 1.26 16 8 N -0.92 -52.35 11.29 21.45 0.24 -52.11 16 9 Si 0.97 41.93 29.54 68.60 2.03 43.96 16 10 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.72 -29.65 5.02 -461.41 -2.32 -31.96 16 14 C 0.69 28.24 6.99 179.06 1.25 29.49 16 15 O -0.61 -29.85 10.92 -4.00 -0.04 -29.89 16 16 N -0.68 -20.96 5.34 -317.18 -1.69 -22.66 16 17 C 0.16 4.90 6.30 38.15 0.24 5.14 16 18 C -0.15 -3.68 9.97 22.39 0.22 -3.46 16 19 C -0.07 -1.57 7.92 22.25 0.18 -1.40 16 20 C -0.11 -2.33 4.40 -19.84 -0.09 -2.42 16 21 C -0.04 -0.52 3.00 -12.28 -0.04 -0.56 16 22 H 0.13 1.50 7.87 -2.39 -0.02 1.48 16 23 C -0.14 -1.31 8.94 71.98 0.64 -0.66 16 24 C 0.48 8.67 7.49 71.24 0.53 9.20 16 25 O -0.55 -14.47 15.86 21.98 0.35 -14.12 16 26 O -0.51 -5.80 13.33 -51.39 -0.68 -6.48 16 27 C -0.09 -2.36 9.66 22.25 0.21 -2.15 16 28 C -0.15 -4.81 8.70 22.39 0.19 -4.61 16 29 H 0.04 1.81 5.66 -2.39 -0.01 1.80 16 30 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.03 1.33 7.85 -2.39 -0.02 1.31 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 4.10 5.95 -2.39 -0.01 4.08 16 34 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 35 H 0.40 13.86 8.56 -92.71 -0.79 13.07 16 36 H 0.42 9.56 8.84 -92.71 -0.82 8.75 16 37 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.14 2.50 7.51 -2.91 -0.02 2.48 16 39 H 0.09 0.60 8.11 -2.38 -0.02 0.58 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.62 7.38 -2.39 -0.02 0.60 16 42 H 0.43 1.74 9.10 -74.05 -0.67 1.07 16 43 H 0.14 2.93 7.94 -2.91 -0.02 2.90 16 44 H 0.11 4.42 6.22 -2.91 -0.02 4.41 16 Total: -1.00 -74.89 363.32 1.56 -73.34 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: -1.22 Total: 34.10 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 4.90 Total: 5.83 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -3.77 Total: -106.73 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.38 Total: -50.50 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -74.89 1.56 -73.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.704 kcal (2) G-P(sol) polarization free energy of solvation -74.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds