Wall clock time and date at job start Tue Mar 31 2020 12:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47240 * 2 1 4 4 H 1.09004 * 109.46876 * 305.25971 * 3 2 1 5 5 C 1.50694 * 109.47343 * 185.25657 * 3 2 1 6 6 H 1.07999 * 120.00270 * 244.89154 * 5 3 2 7 7 C 1.37876 * 119.99977 * 64.89027 * 5 3 2 8 8 N 1.31519 * 120.00111 * 6.40197 * 7 5 3 9 9 Si 1.86805 * 120.00146 * 186.40127 * 7 5 3 10 10 H 1.48496 * 109.47220 * 94.99091 * 9 7 5 11 11 H 1.48502 * 109.47164 * 214.99592 * 9 7 5 12 12 H 1.48504 * 109.46804 * 334.99474 * 9 7 5 13 13 N 1.46498 * 109.46874 * 65.25260 * 3 2 1 14 14 C 1.34773 * 120.00382 * 274.99944 * 13 3 2 15 15 O 1.21590 * 120.00088 * 0.02562 * 14 13 3 16 16 N 1.34780 * 120.00282 * 180.02562 * 14 13 3 17 17 C 1.39947 * 120.00190 * 185.10364 * 16 14 13 18 18 C 1.38868 * 120.06670 * 144.53188 * 17 16 14 19 19 C 1.38111 * 119.92608 * 180.25299 * 18 17 16 20 20 C 1.38285 * 120.07290 * 359.47443 * 19 18 17 21 21 C 1.50696 * 119.93453 * 180.25043 * 20 19 18 22 22 H 1.09000 * 109.47356 * 180.25322 * 21 20 19 23 23 C 1.52995 * 109.47342 * 300.25636 * 21 20 19 24 24 C 1.50701 * 109.46701 * 60.25346 * 21 20 19 25 25 O 1.20826 * 120.00282 * 0.02562 * 24 21 20 26 26 O 1.34229 * 119.99956 * 179.97438 * 24 21 20 27 27 C 1.38281 * 120.13361 * 0.50746 * 20 19 18 28 28 C 1.38109 * 120.07304 * 359.76688 * 27 20 19 29 29 H 1.08995 * 109.47287 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47453 * 300.00309 * 1 2 3 31 31 H 1.09005 * 109.46965 * 59.99930 * 1 2 3 32 32 H 1.09003 * 109.47261 * 240.00404 * 2 1 3 33 33 H 1.09000 * 109.47282 * 119.99741 * 2 1 3 34 34 H 0.97003 * 119.99689 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99959 * 95.00822 * 13 3 2 36 36 H 0.97002 * 119.99482 * 5.10295 * 16 14 13 37 37 H 1.08002 * 120.03528 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.96739 * 179.69823 * 19 18 17 39 39 H 1.08996 * 109.47136 * 179.97438 * 23 21 20 40 40 H 1.08998 * 109.47086 * 300.00073 * 23 21 20 41 41 H 1.09000 * 109.47152 * 59.99560 * 23 21 20 42 42 H 0.96705 * 117.00507 * 180.02562 * 26 24 21 43 43 H 1.08007 * 119.96179 * 179.74469 * 27 20 19 44 44 H 1.08003 * 120.03687 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9828 -0.8392 5 6 3.5413 1.4445 -0.1302 6 1 4.1530 1.8161 0.6786 7 6 4.1341 0.9720 -1.2818 8 7 3.3912 0.6375 -2.3143 9 14 5.9924 0.8069 -1.3759 10 1 6.3843 -0.5822 -1.0268 11 1 6.4479 1.1182 -2.7546 12 1 6.6224 1.7537 -0.4208 13 7 1.6577 2.0956 1.2544 14 6 0.4409 2.6624 1.3755 15 8 -0.3397 2.6313 0.4438 16 7 0.0893 3.2637 2.5294 17 6 -1.2097 3.7578 2.6935 18 6 -1.8270 3.6928 3.9357 19 6 -3.1110 4.1766 4.0932 20 6 -3.7778 4.7350 3.0181 21 6 -5.1766 5.2670 3.1948 22 1 -5.5382 5.6611 2.2450 23 6 -6.0968 4.1373 3.6615 24 6 -5.1693 6.3668 4.2250 25 8 -4.1343 6.6863 4.7604 26 8 -6.3124 6.9924 4.5471 27 6 -3.1656 4.8014 1.7800 28 6 -1.8839 4.3143 1.6146 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8083 0.3055 -3.1246 35 1 2.2803 2.1203 1.9978 36 1 0.7368 3.3539 3.2460 37 1 -1.3052 3.2604 4.7767 38 1 -3.5935 4.1220 5.0579 39 1 -7.1084 4.5222 3.7897 40 1 -6.1020 3.3417 2.9164 41 1 -5.7353 3.7431 4.6112 42 1 -6.2578 7.6916 5.2129 43 1 -3.6906 5.2344 0.9412 44 1 -1.4065 4.3661 0.6472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609913011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:03 Heat of formation + Delta-G solvation = -102.624267 kcal Electronic energy + Delta-G solvation = -26553.608517 eV Core-core repulsion = 22663.668190 eV Total energy + Delta-G solvation = -3889.940326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.84745 -40.08722 -38.57624 -36.41259 -35.70389 -34.62577 -33.33053 -32.28367 -30.90981 -30.80752 -28.44308 -26.80581 -25.32264 -23.40716 -22.89772 -22.42736 -20.99708 -20.17519 -19.56002 -18.34472 -18.11264 -17.45769 -16.83139 -16.20050 -15.92223 -15.50378 -15.23985 -15.00927 -14.45438 -14.22301 -13.92404 -13.74427 -13.43736 -13.32707 -12.98811 -12.72495 -12.61375 -12.60155 -12.11980 -12.02123 -11.73100 -11.51633 -11.38175 -11.32943 -11.04476 -10.98901 -10.81134 -10.62586 -10.34231 -10.22465 -9.97759 -9.62691 -9.32341 -9.08641 -8.74346 -8.51730 -8.02037 -7.68055 -6.15812 -4.22440 1.34484 1.58202 1.97340 2.81176 3.20072 3.23402 3.31260 3.33890 3.70679 4.06600 4.31345 4.33990 4.61999 4.82042 4.93282 5.04367 5.09825 5.16544 5.17589 5.40463 5.44317 5.51430 5.73044 5.80916 5.85805 6.13108 6.21929 6.36586 6.37410 6.42925 6.52222 6.62132 6.64652 6.76259 7.00279 7.09384 7.27096 7.31092 7.34018 7.43940 7.63738 7.64386 7.81714 7.94564 8.08843 8.73653 8.83719 9.24564 9.45249 10.91995 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033161 B = 0.002377 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.162569 B =11778.339970 C =12058.091882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.285 3.715 4 H 0.056 0.944 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.719 5.719 14 C 0.693 3.307 15 O -0.575 6.575 16 N -0.699 5.699 17 C 0.189 3.811 18 C -0.157 4.157 19 C -0.068 4.068 20 C -0.115 4.115 21 C -0.033 4.033 22 H 0.115 0.885 23 C -0.141 4.141 24 C 0.479 3.521 25 O -0.502 6.502 26 O -0.519 6.519 27 C -0.087 4.087 28 C -0.121 4.121 29 H 0.021 0.979 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.385 0.615 36 H 0.402 0.598 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.408 0.592 43 H 0.123 0.877 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.690 8.296 13.766 23.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.161 4.161 3 C 0.183 3.817 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.452 6.452 16 N -0.346 5.346 17 C 0.092 3.908 18 C -0.178 4.178 19 C -0.087 4.087 20 C -0.116 4.116 21 C -0.052 4.052 22 H 0.133 0.867 23 C -0.199 4.199 24 C 0.320 3.680 25 O -0.389 6.389 26 O -0.331 6.331 27 C -0.106 4.106 28 C -0.142 4.142 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.217 0.783 36 H 0.237 0.763 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.267 0.733 43 H 0.141 0.859 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.003 7.878 12.476 22.513 hybrid contribution 1.753 0.368 1.110 2.108 sum -15.250 8.246 13.586 22.026 Atomic orbital electron populations 1.21814 0.97976 0.97999 1.01534 1.21878 0.93020 0.99901 1.01285 1.18731 0.94193 0.88729 0.80046 0.92622 1.21196 0.90572 1.43543 1.02146 0.92098 1.24882 0.98508 0.95073 0.95091 1.69972 1.35322 1.42940 1.03467 0.86472 0.84953 0.78417 0.77485 1.20560 1.21102 1.19862 1.45833 1.13217 1.58562 1.19323 1.16111 0.83697 0.78682 0.82179 1.90884 1.51500 1.64672 1.38183 1.42899 1.11664 1.61619 1.18445 1.17592 0.84827 0.94210 0.94145 1.20800 0.95574 1.04691 0.96732 1.20516 0.93860 0.96666 0.97620 1.19102 0.94279 1.03574 0.94639 1.19833 0.95484 0.92573 0.97356 0.86735 1.21809 0.98475 0.97142 1.02443 1.23549 0.80657 0.81879 0.81876 1.90755 1.33160 1.63439 1.51530 1.84534 1.37647 1.51210 1.59685 1.20860 0.94754 0.98945 0.96014 1.21375 0.95191 0.97576 1.00048 0.95958 0.94053 0.92992 0.89837 0.94875 0.92547 0.78254 0.76336 0.85948 0.86561 0.91126 0.90484 0.91930 0.73345 0.85917 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.52 37.16 0.32 -2.70 16 2 C -0.12 -2.90 5.49 -26.73 -0.15 -3.05 16 3 C 0.28 7.02 2.11 -69.08 -0.15 6.88 16 4 H 0.06 1.60 7.56 -51.93 -0.39 1.21 16 5 C -0.54 -13.92 8.67 -34.44 -0.30 -14.22 16 6 H 0.06 1.51 7.73 -52.49 -0.41 1.11 16 7 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 8 N -0.88 -24.59 11.97 55.43 0.66 -23.93 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.72 -14.51 5.03 -59.81 -0.30 -14.81 16 14 C 0.69 13.59 6.99 -86.92 -0.61 12.98 16 15 O -0.57 -13.07 10.92 5.29 0.06 -13.02 16 16 N -0.70 -10.75 5.34 -14.22 -0.08 -10.83 16 17 C 0.19 2.87 6.29 -83.69 -0.53 2.35 16 18 C -0.16 -2.03 9.97 -39.39 -0.39 -2.42 16 19 C -0.07 -0.82 7.93 -39.61 -0.31 -1.14 16 20 C -0.11 -1.35 4.40 -104.59 -0.46 -1.81 16 21 C -0.03 -0.29 3.00 -92.93 -0.28 -0.57 16 22 H 0.11 0.81 7.87 -51.93 -0.41 0.40 16 23 C -0.14 -1.00 8.93 37.16 0.33 -0.66 16 24 C 0.48 4.59 7.50 36.01 0.27 4.86 16 25 O -0.50 -6.53 15.88 -18.75 -0.30 -6.82 16 26 O -0.52 -3.50 13.33 -39.26 -0.52 -4.02 16 27 C -0.09 -1.13 9.66 -39.61 -0.38 -1.51 16 28 C -0.12 -1.92 8.70 -39.40 -0.34 -2.26 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.91 5.64 -51.93 -0.29 0.61 16 31 H 0.05 1.23 7.86 -51.93 -0.41 0.82 16 32 H 0.08 2.19 6.62 -51.93 -0.34 1.85 16 33 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.39 6.69 8.55 -40.82 -0.35 6.34 16 36 H 0.40 4.86 8.84 -40.82 -0.36 4.50 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.23 7.51 -52.49 -0.39 0.84 16 39 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.44 7.37 -51.93 -0.38 0.06 16 42 H 0.41 1.15 9.10 45.56 0.41 1.57 16 43 H 0.12 1.31 7.94 -52.48 -0.42 0.89 16 44 H 0.15 2.64 6.24 -52.48 -0.33 2.31 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -32.85 364.43 -8.39 -41.25 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.31 Total: 12.84 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.07 Total: -1.56 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.29 Total: -49.57 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.76 Total: -23.86 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.85 -8.39 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.379 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds