Wall clock time and date at job start Tue Mar 31 2020 12:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47240 * 2 1 4 4 H 1.09004 * 109.46876 * 305.25971 * 3 2 1 5 5 C 1.50694 * 109.47343 * 185.25657 * 3 2 1 6 6 H 1.07999 * 120.00270 * 244.89154 * 5 3 2 7 7 C 1.37876 * 119.99977 * 64.89027 * 5 3 2 8 8 N 1.31519 * 120.00111 * 6.40197 * 7 5 3 9 9 Si 1.86805 * 120.00146 * 186.40127 * 7 5 3 10 10 H 1.48496 * 109.47220 * 94.99091 * 9 7 5 11 11 H 1.48502 * 109.47164 * 214.99592 * 9 7 5 12 12 H 1.48504 * 109.46804 * 334.99474 * 9 7 5 13 13 N 1.46498 * 109.46874 * 65.25260 * 3 2 1 14 14 C 1.34773 * 120.00382 * 274.99944 * 13 3 2 15 15 O 1.21590 * 120.00088 * 0.02562 * 14 13 3 16 16 N 1.34780 * 120.00282 * 180.02562 * 14 13 3 17 17 C 1.39947 * 120.00190 * 185.10364 * 16 14 13 18 18 C 1.38868 * 120.06670 * 144.53188 * 17 16 14 19 19 C 1.38111 * 119.92608 * 180.25299 * 18 17 16 20 20 C 1.38285 * 120.07290 * 359.47443 * 19 18 17 21 21 C 1.50696 * 119.93453 * 180.25043 * 20 19 18 22 22 H 1.09000 * 109.47356 * 180.25322 * 21 20 19 23 23 C 1.52995 * 109.47342 * 300.25636 * 21 20 19 24 24 C 1.50701 * 109.46701 * 60.25346 * 21 20 19 25 25 O 1.20826 * 120.00282 * 0.02562 * 24 21 20 26 26 O 1.34229 * 119.99956 * 179.97438 * 24 21 20 27 27 C 1.38281 * 120.13361 * 0.50746 * 20 19 18 28 28 C 1.38109 * 120.07304 * 359.76688 * 27 20 19 29 29 H 1.08995 * 109.47287 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47453 * 300.00309 * 1 2 3 31 31 H 1.09005 * 109.46965 * 59.99930 * 1 2 3 32 32 H 1.09003 * 109.47261 * 240.00404 * 2 1 3 33 33 H 1.09000 * 109.47282 * 119.99741 * 2 1 3 34 34 H 0.97003 * 119.99689 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99959 * 95.00822 * 13 3 2 36 36 H 0.97002 * 119.99482 * 5.10295 * 16 14 13 37 37 H 1.08002 * 120.03528 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.96739 * 179.69823 * 19 18 17 39 39 H 1.08996 * 109.47136 * 179.97438 * 23 21 20 40 40 H 1.08998 * 109.47086 * 300.00073 * 23 21 20 41 41 H 1.09000 * 109.47152 * 59.99560 * 23 21 20 42 42 H 0.96705 * 117.00507 * 180.02562 * 26 24 21 43 43 H 1.08007 * 119.96179 * 179.74469 * 27 20 19 44 44 H 1.08003 * 120.03687 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9828 -0.8392 5 6 3.5413 1.4445 -0.1302 6 1 4.1530 1.8161 0.6786 7 6 4.1341 0.9720 -1.2818 8 7 3.3912 0.6375 -2.3143 9 14 5.9924 0.8069 -1.3759 10 1 6.3843 -0.5822 -1.0268 11 1 6.4479 1.1182 -2.7546 12 1 6.6224 1.7537 -0.4208 13 7 1.6577 2.0956 1.2544 14 6 0.4409 2.6624 1.3755 15 8 -0.3397 2.6313 0.4438 16 7 0.0893 3.2637 2.5294 17 6 -1.2097 3.7578 2.6935 18 6 -1.8270 3.6928 3.9357 19 6 -3.1110 4.1766 4.0932 20 6 -3.7778 4.7350 3.0181 21 6 -5.1766 5.2670 3.1948 22 1 -5.5382 5.6611 2.2450 23 6 -6.0968 4.1373 3.6615 24 6 -5.1693 6.3668 4.2250 25 8 -4.1343 6.6863 4.7604 26 8 -6.3124 6.9924 4.5471 27 6 -3.1656 4.8014 1.7800 28 6 -1.8839 4.3143 1.6146 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8083 0.3055 -3.1246 35 1 2.2803 2.1203 1.9978 36 1 0.7368 3.3539 3.2460 37 1 -1.3052 3.2604 4.7767 38 1 -3.5935 4.1220 5.0579 39 1 -7.1084 4.5222 3.7897 40 1 -6.1020 3.3417 2.9164 41 1 -5.7353 3.7431 4.6112 42 1 -6.2578 7.6916 5.2129 43 1 -3.6906 5.2344 0.9412 44 1 -1.4065 4.3661 0.6472 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609913011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:02 Heat of formation + Delta-G solvation = -125.107058 kcal Electronic energy + Delta-G solvation = -26554.583444 eV Core-core repulsion = 22663.668190 eV Total energy + Delta-G solvation = -3890.915253 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.78356 -41.30329 -39.74368 -37.40380 -36.95251 -36.02256 -34.58373 -34.02736 -32.62674 -31.86370 -29.66071 -28.56218 -26.04924 -25.08073 -24.16232 -23.50775 -22.36660 -21.37517 -21.16282 -19.78658 -18.93199 -18.75796 -17.87384 -17.59506 -17.05539 -16.84597 -16.56701 -16.26879 -16.00137 -15.61093 -15.03147 -14.94605 -14.55537 -14.46454 -14.39799 -14.04334 -13.87009 -13.53017 -13.40189 -13.26072 -13.15338 -12.88902 -12.77297 -12.63971 -12.48044 -12.27819 -12.12758 -12.08111 -11.95200 -11.62969 -11.39599 -11.18525 -11.07539 -10.84759 -10.54277 -9.80485 -9.70114 -8.92307 -8.18221 -6.32261 0.30374 0.52903 1.25822 1.45086 1.45447 1.55927 1.82435 2.11030 2.30736 2.43004 2.95471 3.13745 3.47664 3.56085 3.88338 4.09145 4.16840 4.25258 4.46733 4.48667 4.49534 4.55736 4.64127 4.68725 4.75602 4.90060 4.97128 5.05503 5.11071 5.22867 5.28379 5.36339 5.41320 5.44759 5.52604 5.60724 5.62305 5.64548 5.67904 5.75041 5.88658 6.08736 6.13984 6.30524 6.76808 7.05081 7.26929 7.35708 7.73881 8.90082 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033161 B = 0.002377 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.162569 B =11778.339970 C =12058.091882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C 0.295 3.705 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.716 5.716 14 C 0.693 3.307 15 O -0.610 6.610 16 N -0.681 5.681 17 C 0.161 3.839 18 C -0.150 4.150 19 C -0.071 4.071 20 C -0.107 4.107 21 C -0.035 4.035 22 H 0.134 0.866 23 C -0.138 4.138 24 C 0.487 3.513 25 O -0.542 6.542 26 O -0.509 6.509 27 C -0.093 4.093 28 C -0.146 4.146 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.025 0.975 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.419 0.581 37 H 0.146 0.854 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.427 0.573 43 H 0.141 0.859 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.627 8.571 16.210 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.153 4.153 3 C 0.191 3.809 4 H 0.022 0.978 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.368 5.368 14 C 0.393 3.607 15 O -0.490 6.490 16 N -0.330 5.330 17 C 0.066 3.934 18 C -0.171 4.171 19 C -0.090 4.090 20 C -0.108 4.108 21 C -0.054 4.054 22 H 0.152 0.848 23 C -0.195 4.195 24 C 0.330 3.670 25 O -0.432 6.432 26 O -0.322 6.322 27 C -0.111 4.111 28 C -0.167 4.167 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.256 0.744 37 H 0.164 0.836 38 H 0.154 0.846 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.288 0.712 43 H 0.159 0.841 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.970 8.193 15.000 24.800 hybrid contribution 1.860 0.399 0.402 1.945 sum -16.109 8.592 15.402 23.886 Atomic orbital electron populations 1.21631 0.96771 0.99022 1.00315 1.21725 0.93968 0.99136 1.00467 1.18278 0.93550 0.88774 0.80254 0.97826 1.21550 0.91313 1.43208 1.02498 0.90995 1.25757 1.03150 0.94730 0.94722 1.70120 1.37313 1.43925 1.04062 0.85391 0.79265 0.78705 0.77316 1.19820 1.21391 1.18753 1.45448 1.14029 1.58805 1.18523 1.16181 0.83022 0.78609 0.82873 1.90872 1.52437 1.65821 1.39850 1.42552 1.12438 1.60630 1.17408 1.17787 0.84805 0.95745 0.95108 1.21037 0.95904 1.03930 0.96238 1.20845 0.93617 0.95940 0.98587 1.19426 0.95598 1.01966 0.93763 1.19920 0.93904 0.93193 0.98419 0.84801 1.21808 0.98857 0.96446 1.02365 1.23550 0.80552 0.81603 0.81245 1.90753 1.34583 1.64769 1.53088 1.84485 1.36041 1.51575 1.60142 1.21063 0.93855 0.98684 0.97498 1.21269 0.96717 0.99647 0.99065 0.93635 0.93894 0.95531 0.92552 0.93513 0.92611 0.76420 0.74376 0.83598 0.84619 0.89399 0.90360 0.91926 0.71172 0.84082 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.52 71.98 0.61 -4.81 16 2 C -0.11 -5.53 5.49 30.60 0.17 -5.36 16 3 C 0.30 15.02 2.11 44.25 0.09 15.11 16 4 H 0.00 0.23 7.56 -2.39 -0.02 0.21 16 5 C -0.55 -28.70 8.67 25.60 0.22 -28.48 16 6 H 0.07 3.53 7.73 -2.91 -0.02 3.50 16 7 C 0.02 0.90 5.21 84.65 0.44 1.34 16 8 N -0.92 -52.76 11.97 21.45 0.26 -52.51 16 9 Si 0.97 41.96 29.54 68.60 2.03 43.98 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 13 N -0.72 -29.32 5.03 -461.41 -2.32 -31.64 16 14 C 0.69 27.87 6.99 179.05 1.25 29.12 16 15 O -0.61 -29.17 10.92 -4.00 -0.04 -29.21 16 16 N -0.68 -20.94 5.34 -317.17 -1.69 -22.64 16 17 C 0.16 4.89 6.29 38.15 0.24 5.13 16 18 C -0.15 -3.65 9.97 22.39 0.22 -3.43 16 19 C -0.07 -1.59 7.93 22.25 0.18 -1.41 16 20 C -0.11 -2.32 4.40 -19.84 -0.09 -2.41 16 21 C -0.04 -0.53 3.00 -12.29 -0.04 -0.57 16 22 H 0.13 1.50 7.87 -2.39 -0.02 1.48 16 23 C -0.14 -1.52 8.93 71.98 0.64 -0.87 16 24 C 0.49 8.09 7.50 71.24 0.53 8.62 16 25 O -0.54 -13.08 15.88 21.96 0.35 -12.73 16 26 O -0.51 -5.26 13.33 -51.41 -0.69 -5.95 16 27 C -0.09 -2.37 9.66 22.25 0.21 -2.16 16 28 C -0.15 -4.79 8.70 22.39 0.19 -4.59 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.90 5.64 -2.39 -0.01 1.89 16 31 H 0.03 1.29 7.86 -2.38 -0.02 1.28 16 32 H 0.06 3.05 6.62 -2.39 -0.02 3.03 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.40 13.71 8.55 -92.71 -0.79 12.92 16 36 H 0.42 9.72 8.84 -92.71 -0.82 8.90 16 37 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.14 2.49 7.51 -2.91 -0.02 2.47 16 39 H 0.09 0.70 8.11 -2.39 -0.02 0.68 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.70 7.37 -2.39 -0.02 0.68 16 42 H 0.43 1.14 9.10 -74.05 -0.67 0.47 16 43 H 0.14 2.93 7.94 -2.91 -0.02 2.91 16 44 H 0.11 4.42 6.24 -2.91 -0.02 4.40 16 Total: -1.00 -73.76 364.43 1.56 -72.20 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -1.22 Total: 33.25 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 4.89 Total: 5.24 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -3.76 Total: -106.79 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.38 Total: -47.89 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -73.76 1.56 -72.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609913011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.903 kcal (2) G-P(sol) polarization free energy of solvation -73.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds