Wall clock time and date at job start Tue Mar 31 2020 13:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47031 * 2 1 4 4 C 1.53003 * 109.46918 * 119.99826 * 2 1 3 5 5 N 1.46500 * 109.47216 * 304.99740 * 4 2 1 6 6 C 1.34773 * 119.99923 * 180.02562 * 5 4 2 7 7 O 1.21589 * 119.99865 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99898 * 180.02562 * 6 5 4 9 9 C 1.40026 * 119.99999 * 175.49355 * 8 6 5 10 10 C 1.38910 * 119.99971 * 214.85094 * 9 8 6 11 11 C 1.38011 * 119.99637 * 179.81100 * 10 9 8 12 12 C 1.38905 * 120.00020 * 0.44287 * 11 10 9 13 13 O 1.35784 * 119.99986 * 179.76405 * 12 11 10 14 14 C 1.34808 * 117.00112 * 185.36662 * 13 12 11 15 15 H 1.07999 * 119.99956 * 354.95780 * 14 13 12 16 16 C 1.38631 * 119.99944 * 174.96876 * 14 13 12 17 17 N 1.31579 * 119.99830 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99914 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47445 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47055 * 119.99652 * 18 16 14 21 21 H 1.48498 * 109.46829 * 239.99501 * 18 16 14 22 22 C 1.38905 * 120.00275 * 359.78640 * 12 11 10 23 23 C 1.38006 * 120.00015 * 0.02562 * 22 12 11 24 24 C 1.52994 * 109.46939 * 239.99745 * 2 1 3 25 25 C 1.53003 * 117.50208 * 351.37968 * 24 2 1 26 26 C 1.53000 * 60.00158 * 107.49261 * 25 24 2 27 27 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46671 * 300.00467 * 1 2 3 29 29 H 1.08997 * 109.47041 * 60.00099 * 1 2 3 30 30 H 0.96700 * 113.99778 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47234 * 65.00258 * 4 2 1 32 32 H 1.08997 * 109.47136 * 184.99649 * 4 2 1 33 33 H 0.97004 * 119.99554 * 0.02562 * 5 4 2 34 34 H 0.97004 * 119.99718 * 355.49292 * 8 6 5 35 35 H 1.07993 * 120.00242 * 0.02562 * 10 9 8 36 36 H 1.08001 * 120.00004 * 180.18237 * 11 10 9 37 37 H 0.97006 * 119.99792 * 179.97438 * 17 16 14 38 38 H 1.08004 * 119.99806 * 179.97438 * 22 12 11 39 39 H 1.08001 * 120.00096 * 179.97438 * 23 22 12 40 40 H 1.09004 * 115.56264 * 205.69160 * 24 2 1 41 41 H 1.08999 * 117.49743 * 214.98188 * 25 24 2 42 42 H 1.09000 * 117.49301 * 359.97438 * 25 24 2 43 43 H 1.09006 * 117.49424 * 252.51754 * 26 25 24 44 44 H 1.08992 * 117.50065 * 107.49230 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4559 -0.1036 2.4424 6 6 1.7648 -0.5767 3.6660 7 8 2.5279 -1.5165 3.7796 8 7 1.2270 -0.0087 4.7636 9 6 1.4725 -0.5583 6.0279 10 6 0.4838 -0.5261 7.0031 11 6 0.7245 -1.0712 8.2480 12 6 1.9586 -1.6437 8.5287 13 8 2.1970 -2.1758 9.7550 14 6 3.4481 -2.6147 9.9990 15 1 4.1855 -2.6098 9.2100 16 6 3.7879 -3.0726 11.2626 17 7 2.8894 -3.0783 12.2239 18 14 5.5212 -3.6815 11.6005 19 1 6.3342 -3.5730 10.3626 20 1 6.1360 -2.8560 12.6709 21 1 5.4712 -5.1001 12.0366 22 6 2.9489 -1.6716 7.5550 23 6 2.7070 -1.1300 6.3090 24 6 2.0400 -0.7213 -1.2492 25 6 1.0104 -1.4542 -2.1116 26 6 1.6358 -0.1496 -2.6096 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9703 1.4236 -0.0004 31 1 1.7517 -1.7715 1.2057 32 1 3.1263 -0.6444 1.2952 33 1 0.8468 0.6459 2.3517 34 1 0.6699 0.7807 4.6777 35 1 -0.4744 -0.0777 6.7861 36 1 -0.0452 -1.0489 9.0053 37 1 3.1271 -3.3990 13.1080 38 1 3.9086 -2.1164 7.7735 39 1 3.4771 -1.1513 5.5521 40 1 3.0322 -1.1645 -1.1643 41 1 1.3253 -2.3795 -2.5940 42 1 -0.0302 -1.4228 -1.7888 43 1 1.0064 0.7404 -2.6146 44 1 2.3620 -0.2167 -3.4196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649699338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:02 Heat of formation + Delta-G solvation = -44.901652 kcal Electronic energy + Delta-G solvation = -25950.960577 eV Core-core repulsion = 22063.523291 eV Total energy + Delta-G solvation = -3887.437286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.51943 -39.62394 -38.63734 -36.66657 -36.00162 -34.43467 -33.87376 -32.13618 -30.87377 -30.13330 -28.13258 -26.93923 -25.22057 -23.72057 -22.79977 -22.24631 -21.45056 -20.56834 -20.08798 -18.58617 -17.94093 -17.53741 -17.17802 -16.49101 -15.99073 -15.81842 -15.21932 -14.76671 -14.53099 -14.44630 -14.25278 -13.93960 -13.55741 -13.50973 -13.39218 -12.93500 -12.83273 -12.80492 -12.49937 -12.32144 -11.70398 -11.68829 -11.51558 -11.46107 -11.28355 -11.00668 -10.99003 -10.69859 -10.68345 -10.38828 -10.36174 -9.92362 -9.64234 -9.16302 -9.13586 -8.64291 -8.14431 -6.86505 -6.40156 -3.97507 2.19635 2.30095 2.69443 3.15421 3.18153 3.22471 3.23881 3.36896 3.88544 4.01322 4.02681 4.22342 4.35655 4.41255 4.56713 4.63749 4.66205 4.88287 5.14288 5.18044 5.27343 5.31155 5.32725 5.39305 5.47507 5.53745 5.61327 5.68917 5.72898 5.79406 5.80194 6.18435 6.23480 6.30881 6.40847 6.72501 6.79464 7.01572 7.16197 7.20103 7.25674 7.39411 7.49953 7.84774 8.05102 8.09259 8.71550 9.06007 9.76269 10.78028 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028275 B = 0.002109 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.044591 B =13273.000491 C =13872.115821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.152 3.848 3 O -0.553 6.553 4 C 0.120 3.880 5 N -0.743 5.743 6 C 0.698 3.302 7 O -0.577 6.577 8 N -0.675 5.675 9 C 0.054 3.946 10 C -0.095 4.095 11 C -0.178 4.178 12 C 0.145 3.855 13 O -0.179 6.179 14 C -0.389 4.389 15 H 0.093 0.907 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.220 4.220 23 C -0.064 4.064 24 C -0.188 4.188 25 C -0.176 4.176 26 C -0.163 4.163 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.380 0.620 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.397 0.603 34 H 0.397 0.603 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.269 0.731 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 8.120 -26.791 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.111 3.889 3 O -0.359 6.359 4 C -0.006 4.006 5 N -0.400 5.400 6 C 0.399 3.601 7 O -0.454 6.454 8 N -0.322 5.322 9 C -0.039 4.039 10 C -0.116 4.116 11 C -0.198 4.198 12 C 0.091 3.909 13 O -0.082 6.082 14 C -0.465 4.465 15 H 0.110 0.890 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.239 4.239 23 C -0.084 4.084 24 C -0.207 4.207 25 C -0.213 4.213 26 C -0.200 4.200 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.228 0.772 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.232 0.768 34 H 0.231 0.769 35 H 0.132 0.868 36 H 0.139 0.861 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.117 0.883 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.327 7.257 -26.270 27.596 hybrid contribution 1.006 0.216 0.008 1.029 sum -3.321 7.474 -26.262 27.506 Atomic orbital electron populations 1.21883 0.92300 1.02860 1.02966 1.20850 0.95000 0.81965 0.91066 1.86545 1.27164 1.25339 1.96870 1.21776 0.98253 0.97629 0.82893 1.45004 1.52407 1.38422 1.04217 1.15961 0.81431 0.82440 0.80269 1.90934 1.38939 1.30166 1.85338 1.42280 1.54220 1.31497 1.04190 1.17041 0.95072 1.07827 0.83996 1.20325 0.96768 1.01509 0.93000 1.19969 0.96747 1.05760 0.97289 1.19407 0.93370 0.91588 0.86537 1.83973 1.31746 1.66476 1.26028 1.21377 0.85810 1.42142 0.97171 0.89003 1.25280 0.99817 0.97134 0.94392 1.70062 1.33703 1.43732 1.02450 0.85649 0.80416 0.78498 0.78898 1.19073 1.20194 1.20194 1.21113 1.01193 1.08060 0.93579 1.20878 0.95033 0.96732 0.95800 1.22902 1.00609 1.05021 0.92195 1.23150 0.98709 0.96345 1.03113 1.22870 1.03628 0.97619 0.95875 0.90381 0.91703 0.91455 0.77243 0.90571 0.91353 0.76783 0.76879 0.86818 0.86087 0.92160 0.85253 0.85614 0.87252 0.88603 0.87849 0.88327 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 7.21 37.16 0.27 -0.62 16 2 C 0.15 1.02 0.88 -90.62 -0.08 0.94 16 3 O -0.55 -3.88 12.83 -35.23 -0.45 -4.33 16 4 C 0.12 1.09 4.80 -4.04 -0.02 1.07 16 5 N -0.74 -7.63 5.19 -65.22 -0.34 -7.97 16 6 C 0.70 10.41 8.41 -86.92 -0.73 9.68 16 7 O -0.58 -11.14 13.78 5.29 0.07 -11.07 16 8 N -0.67 -9.57 5.35 -14.18 -0.08 -9.64 16 9 C 0.05 0.98 6.30 -83.61 -0.53 0.45 16 10 C -0.10 -1.70 9.96 -39.42 -0.39 -2.10 16 11 C -0.18 -3.77 9.99 -39.42 -0.39 -4.16 16 12 C 0.14 3.59 6.65 -39.09 -0.26 3.33 16 13 O -0.18 -5.18 9.75 0.01 0.00 -5.18 16 14 C -0.39 -11.10 9.48 30.88 0.29 -10.80 16 15 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 16 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 17 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 18 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.22 -5.09 9.16 -39.42 -0.36 -5.45 16 23 C -0.06 -1.34 8.69 -39.42 -0.34 -1.68 16 24 C -0.19 -1.12 5.36 -90.62 -0.49 -1.61 16 25 C -0.18 -0.96 9.57 -26.73 -0.26 -1.22 16 26 C -0.16 -0.89 9.80 -26.73 -0.26 -1.15 16 27 H 0.08 0.46 6.97 -51.93 -0.36 0.09 16 28 H 0.06 0.41 6.57 -51.93 -0.34 0.06 16 29 H 0.07 0.40 7.07 -51.93 -0.37 0.03 16 30 H 0.38 1.75 9.05 45.56 0.41 2.16 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.40 3.18 7.01 -40.82 -0.29 2.90 16 34 H 0.40 4.10 8.84 -40.82 -0.36 3.74 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 37 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.13 3.02 5.63 -52.48 -0.30 2.73 16 39 H 0.13 2.63 6.22 -52.49 -0.33 2.31 16 40 H 0.11 0.63 8.11 -51.93 -0.42 0.21 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.52 5.85 -51.93 -0.30 0.22 16 43 H 0.10 0.57 7.61 -51.93 -0.40 0.18 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -34.77 364.32 -8.21 -42.97 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -4.99 Total: 11.03 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.65 Total: -12.38 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.34 Total: -42.51 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.38 Total: -20.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.77 -8.21 -42.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649699338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.931 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds