Wall clock time and date at job start Tue Mar 31 2020 13:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42896 * 109.47031 * 2 1 4 4 C 1.53003 * 109.46918 * 119.99826 * 2 1 3 5 5 N 1.46500 * 109.47216 * 304.99740 * 4 2 1 6 6 C 1.34773 * 119.99923 * 180.02562 * 5 4 2 7 7 O 1.21589 * 119.99865 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99898 * 180.02562 * 6 5 4 9 9 C 1.40026 * 119.99999 * 175.49355 * 8 6 5 10 10 C 1.38910 * 119.99971 * 214.85094 * 9 8 6 11 11 C 1.38011 * 119.99637 * 179.81100 * 10 9 8 12 12 C 1.38905 * 120.00020 * 0.44287 * 11 10 9 13 13 O 1.35784 * 119.99986 * 179.76405 * 12 11 10 14 14 C 1.34808 * 117.00112 * 185.36662 * 13 12 11 15 15 H 1.07999 * 119.99956 * 354.95780 * 14 13 12 16 16 C 1.38631 * 119.99944 * 174.96876 * 14 13 12 17 17 N 1.31579 * 119.99830 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99914 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47445 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47055 * 119.99652 * 18 16 14 21 21 H 1.48498 * 109.46829 * 239.99501 * 18 16 14 22 22 C 1.38905 * 120.00275 * 359.78640 * 12 11 10 23 23 C 1.38006 * 120.00015 * 0.02562 * 22 12 11 24 24 C 1.52994 * 109.46939 * 239.99745 * 2 1 3 25 25 C 1.53003 * 117.50208 * 351.37968 * 24 2 1 26 26 C 1.53000 * 60.00158 * 107.49261 * 25 24 2 27 27 H 1.08998 * 109.47021 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46671 * 300.00467 * 1 2 3 29 29 H 1.08997 * 109.47041 * 60.00099 * 1 2 3 30 30 H 0.96700 * 113.99778 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47234 * 65.00258 * 4 2 1 32 32 H 1.08997 * 109.47136 * 184.99649 * 4 2 1 33 33 H 0.97004 * 119.99554 * 0.02562 * 5 4 2 34 34 H 0.97004 * 119.99718 * 355.49292 * 8 6 5 35 35 H 1.07993 * 120.00242 * 0.02562 * 10 9 8 36 36 H 1.08001 * 120.00004 * 180.18237 * 11 10 9 37 37 H 0.97006 * 119.99792 * 179.97438 * 17 16 14 38 38 H 1.08004 * 119.99806 * 179.97438 * 22 12 11 39 39 H 1.08001 * 120.00096 * 179.97438 * 23 22 12 40 40 H 1.09004 * 115.56264 * 205.69160 * 24 2 1 41 41 H 1.08999 * 117.49743 * 214.98188 * 25 24 2 42 42 H 1.09000 * 117.49301 * 359.97438 * 25 24 2 43 43 H 1.09006 * 117.49424 * 252.51754 * 26 25 24 44 44 H 1.08992 * 117.50065 * 107.49230 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4559 -0.1036 2.4424 6 6 1.7648 -0.5767 3.6660 7 8 2.5279 -1.5165 3.7796 8 7 1.2270 -0.0087 4.7636 9 6 1.4725 -0.5583 6.0279 10 6 0.4838 -0.5261 7.0031 11 6 0.7245 -1.0712 8.2480 12 6 1.9586 -1.6437 8.5287 13 8 2.1970 -2.1758 9.7550 14 6 3.4481 -2.6147 9.9990 15 1 4.1855 -2.6098 9.2100 16 6 3.7879 -3.0726 11.2626 17 7 2.8894 -3.0783 12.2239 18 14 5.5212 -3.6815 11.6005 19 1 6.3342 -3.5730 10.3626 20 1 6.1360 -2.8560 12.6709 21 1 5.4712 -5.1001 12.0366 22 6 2.9489 -1.6716 7.5550 23 6 2.7070 -1.1300 6.3090 24 6 2.0400 -0.7213 -1.2492 25 6 1.0104 -1.4542 -2.1116 26 6 1.6358 -0.1496 -2.6096 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9703 1.4236 -0.0004 31 1 1.7517 -1.7715 1.2057 32 1 3.1263 -0.6444 1.2952 33 1 0.8468 0.6459 2.3517 34 1 0.6699 0.7807 4.6777 35 1 -0.4744 -0.0777 6.7861 36 1 -0.0452 -1.0489 9.0053 37 1 3.1271 -3.3990 13.1080 38 1 3.9086 -2.1164 7.7735 39 1 3.4771 -1.1513 5.5521 40 1 3.0322 -1.1645 -1.1643 41 1 1.3253 -2.3795 -2.5940 42 1 -0.0302 -1.4228 -1.7888 43 1 1.0064 0.7404 -2.6146 44 1 2.3620 -0.2167 -3.4196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649699338.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:01 Heat of formation + Delta-G solvation = -71.229933 kcal Electronic energy + Delta-G solvation = -25952.102257 eV Core-core repulsion = 22063.523291 eV Total energy + Delta-G solvation = -3888.578966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69205 -40.65614 -40.05899 -38.26442 -36.61887 -35.46115 -35.27694 -34.13449 -31.84701 -31.56897 -29.51475 -27.87996 -27.16313 -24.55220 -23.83965 -23.25934 -22.86032 -21.78922 -20.72671 -20.05145 -19.49824 -19.01346 -18.23665 -17.67379 -16.85500 -16.80079 -16.33299 -16.17070 -16.07789 -15.55978 -15.47051 -15.24352 -15.03200 -14.99242 -14.61287 -14.15775 -13.92389 -13.69501 -13.51980 -13.30357 -13.22945 -13.17292 -12.84325 -12.70542 -12.42262 -12.11530 -12.11041 -11.80917 -11.49133 -11.44148 -11.32582 -11.13014 -10.96346 -10.83836 -10.54880 -10.12734 -9.81681 -8.56510 -8.46021 -6.12477 0.54432 0.60956 1.35244 1.42420 1.53254 1.59619 2.09451 2.18571 2.76390 2.84236 3.15864 3.20537 3.44395 3.50363 3.53801 3.76027 3.89820 4.10710 4.11830 4.14886 4.18084 4.35048 4.50165 4.61237 4.67755 4.74046 4.76933 4.78752 4.86606 4.95980 5.06520 5.08304 5.15080 5.16058 5.28588 5.31305 5.35973 5.41249 5.44658 5.63747 5.72439 5.98820 6.04305 6.21114 6.77432 6.98785 7.03550 7.53464 7.78802 8.76885 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028275 B = 0.002109 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.044591 B =13273.000491 C =13872.115821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.164 3.836 3 O -0.561 6.561 4 C 0.118 3.882 5 N -0.719 5.719 6 C 0.696 3.304 7 O -0.622 6.622 8 N -0.662 5.662 9 C 0.081 3.919 10 C -0.078 4.078 11 C -0.178 4.178 12 C 0.105 3.895 13 O -0.228 6.228 14 C -0.412 4.412 15 H 0.096 0.904 16 C -0.022 4.022 17 N -0.918 5.918 18 Si 1.017 2.983 19 H -0.256 1.256 20 H -0.266 1.266 21 H -0.267 1.267 22 C -0.228 4.228 23 C -0.076 4.076 24 C -0.195 4.195 25 C -0.177 4.177 26 C -0.159 4.159 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.390 0.610 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.412 0.588 34 H 0.422 0.578 35 H 0.167 0.833 36 H 0.130 0.870 37 H 0.273 0.727 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.996 9.563 -29.578 31.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.123 3.877 3 O -0.369 6.369 4 C -0.007 4.007 5 N -0.376 5.376 6 C 0.396 3.604 7 O -0.502 6.502 8 N -0.312 5.312 9 C -0.013 4.013 10 C -0.098 4.098 11 C -0.198 4.198 12 C 0.054 3.946 13 O -0.135 6.135 14 C -0.488 4.488 15 H 0.114 0.886 16 C -0.220 4.220 17 N -0.556 5.556 18 Si 0.836 3.164 19 H -0.180 1.180 20 H -0.191 1.191 21 H -0.192 1.192 22 C -0.248 4.248 23 C -0.097 4.097 24 C -0.214 4.214 25 C -0.214 4.214 26 C -0.196 4.196 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.239 0.761 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.250 0.750 34 H 0.260 0.740 35 H 0.184 0.816 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.142 0.858 40 H 0.127 0.873 41 H 0.118 0.882 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.130 8.781 -29.161 30.883 hybrid contribution 1.093 -0.069 0.504 1.206 sum -4.037 8.712 -28.657 30.223 Atomic orbital electron populations 1.21929 0.91735 1.03259 1.03363 1.20706 0.95295 0.81694 0.89985 1.86527 1.28287 1.25268 1.96783 1.21906 0.98029 0.97475 0.83264 1.44829 1.51700 1.38143 1.02974 1.16150 0.80883 0.82025 0.81335 1.90923 1.40936 1.32290 1.86083 1.42075 1.54377 1.32176 1.02536 1.17150 0.93778 1.04834 0.85534 1.20743 0.98471 0.99665 0.90968 1.20313 0.95529 1.05003 0.98974 1.19932 0.95327 0.93397 0.85938 1.83934 1.32115 1.69170 1.28243 1.21793 0.86314 1.42781 0.97915 0.88622 1.26530 1.04593 0.97073 0.93757 1.70188 1.36305 1.46012 1.03132 0.84555 0.74541 0.78153 0.79116 1.18004 1.19055 1.19233 1.21090 1.00576 1.08666 0.94476 1.20931 0.96511 0.97512 0.94721 1.22877 1.00859 1.05552 0.92154 1.23237 0.98829 0.96570 1.02778 1.22892 1.03592 0.97526 0.95542 0.90021 0.91509 0.90882 0.76075 0.91561 0.91914 0.74968 0.73990 0.81555 0.85252 0.91820 0.86696 0.85766 0.87274 0.88234 0.87376 0.88469 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 7.21 71.98 0.52 -0.89 16 2 C 0.16 1.81 0.88 -10.79 -0.01 1.81 16 3 O -0.56 -6.39 12.83 -148.98 -1.91 -8.30 16 4 C 0.12 1.92 4.80 86.38 0.41 2.33 16 5 N -0.72 -12.74 5.19 -478.53 -2.49 -15.23 16 6 C 0.70 18.99 8.41 179.05 1.51 20.50 16 7 O -0.62 -23.33 13.78 -4.00 -0.06 -23.38 16 8 N -0.66 -16.40 5.35 -317.04 -1.69 -18.09 16 9 C 0.08 2.77 6.30 38.15 0.24 3.01 16 10 C -0.08 -2.53 9.96 22.38 0.22 -2.31 16 11 C -0.18 -7.44 9.99 22.38 0.22 -7.22 16 12 C 0.10 5.36 6.65 22.59 0.15 5.51 16 13 O -0.23 -13.97 9.75 -22.89 -0.22 -14.19 16 14 C -0.41 -24.75 9.48 67.91 0.64 -24.11 16 15 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 16 C -0.02 -1.28 5.49 84.82 0.47 -0.82 16 17 N -0.92 -56.96 13.67 21.61 0.30 -56.66 16 18 Si 1.02 44.30 29.55 68.60 2.03 46.32 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 C -0.23 -10.94 9.16 22.37 0.20 -10.73 16 23 C -0.08 -3.16 8.69 22.38 0.19 -2.97 16 24 C -0.20 -1.96 5.36 -10.79 -0.06 -2.01 16 25 C -0.18 -1.57 9.57 30.60 0.29 -1.28 16 26 C -0.16 -1.39 9.80 30.60 0.30 -1.09 16 27 H 0.08 0.74 6.97 -2.39 -0.02 0.73 16 28 H 0.07 0.61 6.57 -2.39 -0.02 0.60 16 29 H 0.07 0.65 7.07 -2.39 -0.02 0.64 16 30 H 0.39 2.68 9.05 -74.06 -0.67 2.01 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.41 5.05 7.01 -92.71 -0.65 4.40 16 34 H 0.42 6.61 8.84 -92.71 -0.82 5.79 16 35 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.13 5.12 8.06 -2.91 -0.02 5.09 16 37 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 38 H 0.12 5.70 5.63 -2.91 -0.02 5.69 16 39 H 0.12 5.21 6.22 -2.91 -0.02 5.19 16 40 H 0.11 1.10 8.11 -2.38 -0.02 1.08 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.85 5.85 -2.39 -0.01 0.84 16 43 H 0.10 0.90 7.61 -2.38 -0.02 0.88 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -80.03 364.32 0.20 -79.83 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -1.06 Total: 29.99 kcal Atomic # 6 Polarization: -25.59 SS G_CDS: 5.31 Total: -20.28 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -3.88 Total: -89.98 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.19 Total: -45.88 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -80.03 0.20 -79.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649699338.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.596 kcal (2) G-P(sol) polarization free energy of solvation -80.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds