Wall clock time and date at job start Tue Mar 31 2020 13:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46926 * 2 1 4 4 C 1.50702 * 109.46896 * 119.99631 * 2 1 3 5 5 H 1.08001 * 120.00089 * 85.05397 * 4 2 1 6 6 C 1.37880 * 119.99796 * 265.05089 * 4 2 1 7 7 N 1.31514 * 119.99543 * 176.46253 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 356.46680 * 6 4 2 9 9 H 1.48499 * 109.47255 * 274.92138 * 8 6 4 10 10 H 1.48497 * 109.47373 * 34.92801 * 8 6 4 11 11 H 1.48507 * 109.46963 * 154.92420 * 8 6 4 12 12 N 1.46495 * 109.47398 * 239.99722 * 2 1 3 13 13 C 1.46498 * 120.00086 * 300.00036 * 12 2 1 14 14 C 1.34780 * 120.00002 * 119.99746 * 12 2 1 15 15 O 1.21279 * 119.99864 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99900 * 179.97438 * 14 12 2 17 17 N 1.46498 * 109.47249 * 180.02562 * 16 14 12 18 18 C 1.34778 * 120.00536 * 180.02562 * 17 16 14 19 19 O 1.21512 * 119.99516 * 359.97438 * 18 17 16 20 20 O 1.34637 * 120.00349 * 180.02562 * 18 17 16 21 21 C 1.45198 * 117.00113 * 180.02562 * 20 18 17 22 22 C 1.50697 * 109.47247 * 179.97438 * 21 20 18 23 23 C 1.38235 * 119.99670 * 269.72563 * 22 21 20 24 24 C 1.38239 * 119.99620 * 179.76819 * 23 22 21 25 25 C 1.38226 * 120.00231 * 0.49928 * 24 23 22 26 26 C 1.38235 * 119.99924 * 359.75021 * 25 24 23 27 27 C 1.38231 * 119.99967 * 89.99365 * 22 21 20 28 28 H 1.09004 * 109.47201 * 185.54431 * 1 2 3 29 29 H 1.08997 * 109.47748 * 305.54647 * 1 2 3 30 30 H 1.09001 * 109.47150 * 65.54826 * 1 2 3 31 31 H 0.97005 * 119.99553 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47307 * 89.99868 * 13 12 2 33 33 H 1.09006 * 109.47299 * 209.99961 * 13 12 2 34 34 H 1.09005 * 109.47170 * 330.00001 * 13 12 2 35 35 H 1.08999 * 109.47605 * 300.00054 * 16 14 12 36 36 H 1.09002 * 109.47117 * 60.00098 * 16 14 12 37 37 H 0.97004 * 119.99773 * 0.02562 * 17 16 14 38 38 H 1.09003 * 109.46767 * 299.99415 * 21 20 18 39 39 H 1.09002 * 109.47031 * 59.99475 * 21 20 18 40 40 H 1.08006 * 120.00288 * 359.97438 * 23 22 21 41 41 H 1.08005 * 119.99454 * 180.23325 * 24 23 22 42 42 H 1.07999 * 120.00590 * 179.72687 * 25 24 23 43 43 H 1.08002 * 120.00571 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.00706 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.1363 -1.7853 1.2289 6 6 2.3592 0.0122 2.3585 7 7 2.7310 -0.6123 3.4545 8 14 2.2739 1.8780 2.3297 9 1 3.5443 2.4233 1.7876 10 1 1.1430 2.3086 1.4690 11 1 2.0665 2.3853 3.7099 12 7 2.0184 -0.6906 -1.1961 13 6 1.6645 -2.0932 -1.4279 14 6 2.7932 -0.0356 -2.0833 15 8 3.0865 1.1254 -1.8912 16 6 3.2961 -0.7463 -3.3134 17 7 4.1103 0.1744 -4.1106 18 6 4.6683 -0.2451 -5.2636 19 8 4.4962 -1.3870 -5.6416 20 8 5.4170 0.6009 -5.9960 21 6 5.9861 0.0810 -7.2265 22 6 6.7855 1.1625 -7.9065 23 6 6.1760 2.0011 -8.8209 24 6 6.9082 2.9962 -9.4411 25 6 8.2522 3.1461 -9.1546 26 6 8.8628 2.3041 -8.2440 27 6 8.1295 1.3123 -7.6199 28 1 -0.3634 -1.0229 0.0993 29 1 -0.3634 0.5974 0.8361 30 1 -0.3633 0.4254 -0.9355 31 1 2.9613 -0.1040 4.2479 32 1 0.7377 -2.1445 -1.9992 33 1 2.4630 -2.5819 -1.9862 34 1 1.5296 -2.5969 -0.4706 35 1 3.9019 -1.6023 -3.0164 36 1 2.4486 -1.0893 -3.9068 37 1 4.2480 1.0859 -3.8087 38 1 6.6369 -0.7629 -6.9976 39 1 5.1840 -0.2475 -7.8874 40 1 5.1270 1.8810 -9.0483 41 1 6.4311 3.6538 -10.1527 42 1 8.8253 3.9206 -9.6424 43 1 9.9130 2.4209 -8.0204 44 1 8.6068 0.6541 -6.9091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078420811.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:59 Heat of formation + Delta-G solvation = -84.852085 kcal Electronic energy + Delta-G solvation = -25887.934319 eV Core-core repulsion = 21998.764653 eV Total energy + Delta-G solvation = -3889.169667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.63831 -39.61426 -39.20313 -36.74634 -35.69841 -34.45231 -32.80370 -32.43336 -31.27274 -30.68707 -27.93913 -26.48475 -26.17743 -25.29875 -22.95769 -22.09297 -21.46957 -20.87911 -19.36473 -18.22901 -17.47209 -17.22042 -16.79128 -16.71456 -16.00479 -15.74989 -15.56557 -15.34355 -15.04643 -14.63418 -14.00576 -13.82224 -13.75946 -13.49289 -13.23789 -12.82588 -12.81932 -12.57850 -12.50495 -12.40228 -12.18079 -11.84788 -11.47601 -11.45751 -11.43820 -11.13359 -10.78840 -10.77187 -10.70084 -10.51652 -9.84764 -9.42728 -9.28442 -9.27442 -9.25592 -9.24188 -8.67822 -7.84096 -6.22802 -4.26042 0.78127 1.04401 2.13290 2.76278 3.04645 3.26910 3.34471 3.40352 3.41458 3.68582 4.15171 4.32921 4.44608 4.50777 4.65406 4.76091 4.80350 4.89257 5.05874 5.15692 5.17822 5.28009 5.36699 5.37245 5.57570 5.65375 5.66899 5.89329 6.03871 6.08016 6.13743 6.19479 6.19655 6.27780 6.32840 6.33086 6.50638 6.60048 6.83917 6.97740 7.32773 7.40730 7.53835 7.96072 8.28279 8.38899 8.66451 8.78754 9.38780 10.88792 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019919 B = 0.002315 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.342507 B =12092.547751 C =12747.142531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.222 3.778 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.080 0.920 6 C 0.080 3.920 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.271 1.271 10 H -0.263 1.263 11 H -0.287 1.287 12 N -0.580 5.580 13 C 0.076 3.924 14 C 0.499 3.501 15 O -0.553 6.553 16 C 0.119 3.881 17 N -0.693 5.693 18 C 0.651 3.349 19 O -0.578 6.578 20 O -0.363 6.363 21 C 0.129 3.871 22 C -0.098 4.098 23 C -0.093 4.093 24 C -0.125 4.125 25 C -0.110 4.110 26 C -0.124 4.124 27 C -0.093 4.093 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.027 0.973 31 H 0.267 0.733 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.419 0.581 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 2.837 -23.973 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.122 3.878 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.098 0.902 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.702 3.298 9 H -0.196 1.196 10 H -0.188 1.188 11 H -0.213 1.213 12 N -0.311 5.311 13 C -0.068 4.068 14 C 0.285 3.715 15 O -0.433 6.433 16 C -0.008 4.008 17 N -0.355 5.355 18 C 0.404 3.596 19 O -0.467 6.467 20 O -0.278 6.278 21 C 0.055 3.945 22 C -0.099 4.099 23 C -0.111 4.111 24 C -0.143 4.143 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.111 4.111 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.257 0.743 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.832 2.896 -23.869 24.996 hybrid contribution 0.073 1.116 0.281 1.153 sum 6.905 4.012 -23.588 24.903 Atomic orbital electron populations 1.22217 0.98038 1.01085 0.99206 1.19368 0.90954 0.94927 0.82537 0.91700 1.21098 1.44970 0.95736 0.94736 0.90233 1.24967 0.93630 0.98592 0.95258 1.69884 1.44389 1.36169 1.02138 0.86883 0.79894 0.85926 0.77066 1.19594 1.18804 1.21330 1.48317 1.48280 1.11923 1.22542 1.21756 0.99360 0.82629 1.03054 1.20223 0.79786 0.87215 0.84302 1.90648 1.58797 1.17118 1.76746 1.21159 0.95982 0.92311 0.91304 1.44325 1.52781 1.17700 1.20722 1.17930 0.77925 0.82830 0.80939 1.90992 1.65174 1.18437 1.72114 1.86317 1.62833 1.43149 1.35473 1.21701 0.96507 0.94173 0.82120 1.19553 0.94064 0.98136 0.98109 1.21130 0.99907 0.94238 0.95852 1.21173 0.94457 0.98314 1.00329 1.21255 0.95056 0.98897 0.97599 1.21186 1.00187 0.95663 0.97193 1.21145 0.93535 0.97893 0.98497 0.93000 0.92494 0.95440 0.92287 0.93270 0.92117 0.89497 0.88194 0.88436 0.74273 0.90084 0.90135 0.85662 0.85701 0.85853 0.85668 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.09 37.16 0.34 -2.62 16 2 C 0.22 5.13 2.27 -69.08 -0.16 4.97 16 3 H 0.07 1.65 4.11 -51.93 -0.21 1.43 16 4 C -0.53 -13.99 8.72 -34.44 -0.30 -14.29 16 5 H 0.08 2.22 6.82 -52.49 -0.36 1.87 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 8 Si 0.88 21.66 26.91 -169.99 -4.57 17.08 16 9 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.26 -6.26 6.73 56.52 0.38 -5.88 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 N -0.58 -11.34 2.75 -175.26 -0.48 -11.82 16 13 C 0.08 1.15 9.40 59.85 0.56 1.71 16 14 C 0.50 9.45 7.74 -10.99 -0.09 9.36 16 15 O -0.55 -12.30 14.99 5.56 0.08 -12.22 16 16 C 0.12 1.76 4.71 -5.20 -0.02 1.74 16 17 N -0.69 -10.35 5.53 -66.47 -0.37 -10.72 16 18 C 0.65 9.70 8.75 54.06 0.47 10.17 16 19 O -0.58 -9.60 16.13 -19.28 -0.31 -9.91 16 20 O -0.36 -4.83 10.25 -40.32 -0.41 -5.24 16 21 C 0.13 1.36 5.60 36.00 0.20 1.56 16 22 C -0.10 -0.94 5.52 -104.63 -0.58 -1.52 16 23 C -0.09 -0.80 9.70 -39.58 -0.38 -1.19 16 24 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 25 C -0.11 -0.80 10.05 -39.59 -0.40 -1.19 16 26 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 27 C -0.09 -0.82 9.70 -39.58 -0.38 -1.20 16 28 H 0.05 0.97 7.86 -51.93 -0.41 0.56 16 29 H 0.06 1.17 7.97 -51.93 -0.41 0.76 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16 34 H 0.09 1.45 6.56 -51.93 -0.34 1.11 16 35 H 0.10 1.40 7.40 -51.93 -0.38 1.02 16 36 H 0.10 1.27 8.11 -51.93 -0.42 0.85 16 37 H 0.42 6.35 7.55 -40.82 -0.31 6.05 16 38 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -33.20 372.16 -7.45 -40.65 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.14 Total: 5.04 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -1.63 Total: 6.94 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.08 Total: -47.95 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.64 Total: -27.37 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.57 Total: 17.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.20 -7.45 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420811.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.205 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds