Wall clock time and date at job start Tue Mar 31 2020 12:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.98983 * 2 1 4 4 O 1.43747 * 109.88077 * 238.91659 * 2 1 3 5 5 C 1.44383 * 106.97236 * 214.06342 * 4 2 1 6 6 C 1.54995 * 103.49382 * 40.05742 * 5 4 2 7 7 C 1.54105 * 109.88120 * 121.08243 * 2 1 3 8 8 H 1.09002 * 110.60062 * 240.19006 * 7 2 1 9 9 C 1.50697 * 110.48784 * 2.77618 * 7 2 1 10 10 O 1.21285 * 119.99597 * 84.25924 * 9 7 2 11 11 N 1.34779 * 120.00422 * 264.26624 * 9 7 2 12 12 C 1.39571 * 120.00021 * 180.27247 * 11 9 7 13 13 N 1.32275 * 119.72825 * 359.72804 * 12 11 9 14 14 C 1.31954 * 121.69108 * 179.97438 * 13 12 11 15 15 C 1.38089 * 120.95751 * 359.97438 * 14 13 12 16 16 C 1.38775 * 119.35161 * 0.02562 * 15 14 13 17 17 C 1.38805 * 118.44833 * 359.74548 * 16 15 14 18 18 O 1.35978 * 120.49757 * 180.24700 * 17 16 15 19 19 C 1.42898 * 116.99957 * 0.23060 * 18 17 16 20 20 C 1.53003 * 109.46949 * 180.02562 * 19 18 17 21 21 C 1.50701 * 109.46857 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00296 * 359.97438 * 21 20 19 23 23 C 1.37881 * 119.99641 * 179.97438 * 21 20 19 24 24 N 1.31507 * 120.00171 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99726 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47186 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46805 * 120.00124 * 25 23 21 28 28 H 1.48499 * 109.47109 * 240.00178 * 25 23 21 29 29 H 1.08996 * 109.46902 * 295.51103 * 1 2 3 30 30 H 1.08990 * 109.47112 * 55.51563 * 1 2 3 31 31 H 1.08999 * 109.46792 * 175.51460 * 1 2 3 32 32 H 1.09005 * 110.61508 * 281.55170 * 5 4 2 33 33 H 1.08999 * 110.75471 * 158.62900 * 5 4 2 34 34 H 1.09003 * 110.90261 * 204.78044 * 6 5 4 35 35 H 1.08997 * 110.93541 * 81.18780 * 6 5 4 36 36 H 0.96997 * 119.99675 * 359.97438 * 11 9 7 37 37 H 1.08008 * 119.52338 * 179.97438 * 14 13 12 38 38 H 1.08003 * 120.32334 * 180.02562 * 15 14 13 39 39 H 1.08001 * 120.77361 * 180.02562 * 16 15 14 40 40 H 1.08996 * 109.47865 * 300.00381 * 19 18 17 41 41 H 1.09000 * 109.47002 * 60.00372 * 19 18 17 42 42 H 1.08999 * 109.46764 * 300.00048 * 20 19 18 43 43 H 1.09000 * 109.47075 * 60.00282 * 20 19 18 44 44 H 0.96996 * 120.00547 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6979 -1.1577 5 6 3.2380 -1.3641 -0.7646 6 6 2.9196 -1.8914 0.6577 7 6 2.0540 -0.7482 1.2411 8 1 2.6615 -0.0871 1.8593 9 6 0.9075 -1.3104 2.0413 10 8 0.4257 -2.3819 1.7401 11 7 0.4172 -0.6224 3.0915 12 6 -0.6410 -1.1458 3.8360 13 7 -1.1622 -2.3150 3.5028 14 6 -2.1627 -2.8461 4.1797 15 6 -2.7068 -2.1964 5.2700 16 6 -2.1917 -0.9670 5.6560 17 6 -1.1362 -0.4345 4.9287 18 8 -0.5961 0.7649 5.2735 19 6 -1.1610 1.4293 6.4055 20 6 -0.4295 2.7530 6.6373 21 6 -1.0248 3.4533 7.8316 22 1 -1.8433 3.0000 8.3710 23 6 -0.5245 4.6730 8.2356 24 7 0.4718 5.2253 7.5785 25 14 -1.2629 5.5415 9.7154 26 1 -2.3642 4.7172 10.2746 27 1 -0.2151 5.7342 10.7499 28 1 -1.7960 6.8634 9.2986 29 1 -0.3633 0.4426 0.9274 30 1 -0.3633 0.5818 -0.8470 31 1 -0.3633 -1.0245 -0.0804 32 1 4.0685 -0.6588 -0.7356 33 1 3.4613 -2.1905 -1.4393 34 1 3.8333 -2.0223 1.2375 35 1 2.3542 -2.8221 0.6105 36 1 0.8027 0.2344 3.3325 37 1 -2.5618 -3.8029 3.8766 38 1 -3.5253 -2.6407 5.8169 39 1 -2.5995 -0.4391 6.5054 40 1 -2.2173 1.6256 6.2220 41 1 -1.0569 0.7969 7.2872 42 1 0.6269 2.5569 6.8208 43 1 -0.5340 3.3851 5.7556 44 1 0.8235 6.0835 7.8624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092374667.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:37 Heat of formation + Delta-G solvation = -98.943890 kcal Electronic energy + Delta-G solvation = -26870.722134 eV Core-core repulsion = 22980.941401 eV Total energy + Delta-G solvation = -3889.780733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.25942 -41.24233 -39.56342 -38.94997 -36.00080 -35.44375 -33.70510 -32.87152 -32.50658 -32.17837 -30.37779 -27.49322 -27.16781 -25.29123 -24.21597 -23.28345 -23.15492 -22.37698 -20.86802 -19.55320 -18.83286 -18.45545 -18.02960 -17.65088 -17.14804 -17.05710 -16.71397 -16.47790 -16.21751 -16.08549 -15.78625 -15.21376 -14.95685 -14.86031 -14.36048 -14.17927 -13.90053 -13.62193 -13.47369 -13.36636 -13.30457 -13.10626 -12.78554 -12.76477 -12.43773 -12.31193 -12.03975 -11.93208 -11.82602 -11.70288 -11.62454 -11.41861 -11.31907 -10.70324 -10.61196 -10.41448 -10.16498 -8.87150 -8.25540 -6.37690 0.07195 0.27857 1.42345 1.43108 1.55530 1.56066 1.77772 2.10681 2.44376 2.80808 2.86941 3.10003 3.22744 3.42855 3.60276 3.73618 3.85011 3.97988 4.07083 4.13329 4.19496 4.25819 4.29448 4.30159 4.33355 4.45854 4.50937 4.54150 4.74916 4.82115 4.87823 4.90079 4.96088 5.08693 5.10446 5.14144 5.26710 5.31487 5.51242 5.52667 5.73742 5.87481 6.08381 6.17232 6.32554 6.77274 6.91670 7.23750 7.32372 8.87153 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003036 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.394011 B = 9221.355783 C =10861.553334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 H 0.104 0.896 4 O -0.393 6.393 5 C 0.047 3.953 6 C -0.140 4.140 7 C -0.143 4.143 8 H 0.134 0.866 9 C 0.520 3.480 10 O -0.510 6.510 11 N -0.651 5.651 12 C 0.311 3.689 13 N -0.472 5.472 14 C 0.072 3.928 15 C -0.145 4.145 16 C -0.150 4.150 17 C 0.042 3.958 18 O -0.327 6.327 19 C 0.084 3.916 20 C 0.030 3.970 21 C -0.544 4.544 22 H 0.070 0.930 23 C 0.005 3.995 24 N -0.928 5.928 25 Si 0.969 3.031 26 H -0.259 1.259 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.428 0.572 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.156 0.844 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 -13.638 -10.721 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.121 0.879 4 O -0.313 6.313 5 C -0.029 4.029 6 C -0.177 4.177 7 C -0.164 4.164 8 H 0.152 0.848 9 C 0.308 3.692 10 O -0.382 6.382 11 N -0.299 5.299 12 C 0.079 3.921 13 N -0.188 5.188 14 C -0.085 4.085 15 C -0.165 4.165 16 C -0.176 4.176 17 C -0.009 4.009 18 O -0.241 6.241 19 C 0.009 3.991 20 C -0.007 4.007 21 C -0.582 4.582 22 H 0.088 0.912 23 C -0.194 4.194 24 N -0.567 5.567 25 Si 0.793 3.207 26 H -0.182 1.182 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.090 0.910 36 H 0.267 0.733 37 H 0.202 0.798 38 H 0.192 0.808 39 H 0.174 0.826 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.429 -14.580 -12.013 18.945 hybrid contribution -0.434 1.555 1.911 2.502 sum 0.995 -13.024 -10.102 16.513 Atomic orbital electron populations 1.22069 0.94756 1.02319 1.02778 1.22665 0.94567 0.96319 0.82999 0.87850 1.88882 1.41163 1.68140 1.33098 1.23754 0.87210 0.97265 0.94623 1.23171 1.00146 0.97325 0.97100 1.22964 0.95347 1.00394 0.97709 0.84842 1.20860 0.84377 0.84554 0.79438 1.90753 1.59080 1.21758 1.66648 1.43670 1.32427 1.24317 1.29525 1.18010 0.92343 0.91224 0.90519 1.67675 1.12209 1.08598 1.30293 1.23042 0.91964 1.00840 0.92609 1.22272 1.01871 0.94294 0.98106 1.21908 0.96171 0.98167 1.01369 1.19755 0.96716 0.88204 0.96196 1.86022 1.58782 1.29907 1.49369 1.22953 0.97560 0.93555 0.84999 1.18943 0.95396 0.90192 0.96163 1.21425 1.18486 1.04887 1.13361 0.91203 1.25932 0.95246 0.98102 1.00111 1.70091 1.26598 1.18235 1.41783 0.85337 0.78566 0.78290 0.78488 1.18225 1.20480 1.20493 0.91645 0.90628 0.93412 0.89493 0.87513 0.87304 0.90965 0.73323 0.79832 0.80789 0.82607 0.91871 0.91860 0.97918 0.97912 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 8.41 71.98 0.61 -3.36 16 2 C 0.09 1.93 4.05 30.97 0.13 2.06 16 3 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 4 O -0.39 -8.99 11.19 -148.98 -1.67 -10.66 16 5 C 0.05 0.75 7.72 72.66 0.56 1.31 16 6 C -0.14 -2.49 6.65 31.89 0.21 -2.28 16 7 C -0.14 -2.86 3.43 -10.55 -0.04 -2.90 16 8 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 9 C 0.52 14.56 4.72 87.66 0.41 14.98 16 10 O -0.51 -17.83 13.23 -3.05 -0.04 -17.87 16 11 N -0.65 -18.70 4.96 -308.03 -1.53 -20.23 16 12 C 0.31 10.08 7.45 132.99 0.99 11.07 16 13 N -0.47 -15.30 7.88 -192.58 -1.52 -16.82 16 14 C 0.07 1.79 11.17 84.64 0.95 2.74 16 15 C -0.14 -3.12 10.10 22.36 0.23 -2.90 16 16 C -0.15 -3.99 9.14 22.53 0.21 -3.79 16 17 C 0.04 1.35 6.72 22.70 0.15 1.50 16 18 O -0.33 -11.85 9.38 -93.30 -0.88 -12.72 16 19 C 0.08 3.21 4.70 71.98 0.34 3.54 16 20 C 0.03 1.50 5.34 29.85 0.16 1.66 16 21 C -0.54 -28.67 9.11 25.60 0.23 -28.43 16 22 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 23 C 0.00 0.27 5.46 84.66 0.46 0.73 16 24 N -0.93 -53.57 13.29 21.45 0.28 -53.28 16 25 Si 0.97 41.57 29.54 68.60 2.03 43.59 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 28 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 29 H 0.06 1.65 7.10 -2.39 -0.02 1.63 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.42 7.05 -2.39 -0.02 1.40 16 32 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.69 6.93 -2.39 -0.02 1.67 16 36 H 0.43 11.00 8.04 -92.71 -0.75 10.26 16 37 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.16 3.75 6.44 -2.91 -0.02 3.73 16 40 H 0.06 2.27 7.69 -2.39 -0.02 2.25 16 41 H 0.06 2.27 7.71 -2.39 -0.02 2.25 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -71.42 363.23 2.55 -68.87 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.27 Total: 23.19 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 5.59 Total: -4.07 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -2.76 Total: -90.33 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -2.58 Total: -41.25 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -71.42 2.55 -68.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092374667.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.074 kcal (2) G-P(sol) polarization free energy of solvation -71.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds