Wall clock time and date at job start Tue Mar 31 2020 13:47:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52994 * 109.47373 * 2 1
4 4 N 1.46501 * 109.46899 * 120.00335 * 2 1 3
5 5 C 1.34773 * 120.00209 * 155.00182 * 4 2 1
6 6 O 1.21589 * 119.99683 * 359.97438 * 5 4 2
7 7 N 1.34780 * 120.00307 * 179.97438 * 5 4 2
8 8 C 1.39979 * 119.99872 * 184.60975 * 7 5 4
9 9 C 1.38988 * 119.99398 * 144.87402 * 8 7 5
10 10 C 1.38221 * 120.23385 * 180.02562 * 9 8 7
11 11 C 1.38006 * 120.22949 * 359.73877 * 10 9 8
12 12 C 1.39633 * 119.98733 * 0.51252 * 11 10 9
13 13 C 1.47739 * 120.12001 * 179.76587 * 12 11 10
14 14 O 1.21462 * 120.00134 * 179.72188 * 13 12 11
15 15 O 1.34717 * 119.99813 * 359.72487 * 13 12 11
16 16 C 1.45202 * 116.99956 * 179.97438 * 15 13 12
17 17 H 1.09002 * 109.46831 * 329.99984 * 16 15 13
18 18 C 1.52998 * 109.47058 * 89.99902 * 16 15 13
19 19 C 1.50693 * 109.46953 * 210.00165 * 16 15 13
20 20 H 1.08008 * 120.00427 * 359.97438 * 19 16 15
21 21 C 1.37882 * 119.99785 * 180.02562 * 19 16 15
22 22 N 1.31506 * 120.00282 * 359.97438 * 21 19 16
23 23 Si 1.86807 * 119.99725 * 179.97438 * 21 19 16
24 24 H 1.48498 * 109.46914 * 60.00204 * 23 21 19
25 25 H 1.48502 * 109.46608 * 179.97438 * 23 21 19
26 26 H 1.48496 * 109.47249 * 299.99856 * 23 21 19
27 27 C 1.38575 * 119.99712 * 324.88974 * 8 7 5
28 28 H 1.09001 * 109.46944 * 300.00154 * 1 2 3
29 29 H 1.09002 * 109.47391 * 59.99900 * 1 2 3
30 30 H 1.08998 * 109.47478 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46944 * 239.99845 * 2 1 3
32 32 H 1.09001 * 109.47211 * 60.00009 * 3 2 1
33 33 H 1.08999 * 109.47243 * 180.02562 * 3 2 1
34 34 H 1.09008 * 109.47050 * 299.99949 * 3 2 1
35 35 H 0.96998 * 120.00036 * 334.99112 * 4 2 1
36 36 H 0.97000 * 119.99405 * 4.60466 * 7 5 4
37 37 H 1.08001 * 119.88775 * 359.97438 * 9 8 7
38 38 H 1.08005 * 119.88611 * 180.02562 * 10 9 8
39 39 H 1.07997 * 120.01304 * 180.25868 * 11 10 9
40 40 H 1.09002 * 109.46774 * 60.00055 * 18 16 15
41 41 H 1.09002 * 109.47431 * 300.00295 * 18 16 15
42 42 H 1.08991 * 109.47109 * 180.02562 * 18 16 15
43 43 H 0.96994 * 120.00587 * 180.02562 * 22 21 19
44 44 H 1.08001 * 120.11359 * 0.02562 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0183 -0.6907 1.1962
5 6 3.2402 -1.2592 1.1944
6 8 3.9372 -1.1993 0.1999
7 7 3.6897 -1.8942 2.2950
8 6 4.9943 -2.4005 2.3272
9 6 5.7187 -2.3793 3.5132
10 6 7.0075 -2.8774 3.5505
11 6 7.5820 -3.4043 2.4116
12 6 6.8647 -3.4255 1.2139
13 6 7.4787 -3.9841 -0.0083
14 8 6.8509 -4.0061 -1.0478
15 8 8.7350 -4.4691 0.0304
16 6 9.2739 -5.0028 -1.2078
17 1 8.4624 -5.4082 -1.8123
18 6 9.9772 -3.8858 -1.9813
19 6 10.2621 -6.0967 -0.8951
20 1 10.4653 -6.3637 0.1315
21 6 10.9079 -6.7558 -1.9197
22 7 10.6609 -6.4304 -3.1697
23 14 12.1335 -8.1113 -1.5320
24 1 11.4511 -9.1958 -0.7815
25 1 12.6845 -8.6572 -2.7984
26 1 13.2386 -7.5587 -0.7083
27 6 5.5634 -2.9225 1.1766
28 1 -0.3633 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 1.6767 1.9563 0.8900
33 1 3.1300 1.4424 -0.0005
34 1 1.6767 1.9563 -0.8901
35 1 1.4622 -0.7387 1.9895
36 1 3.1090 -2.0003 3.0648
37 1 5.2735 -1.9714 4.4086
38 1 7.5653 -2.8585 4.4752
39 1 8.5877 -3.7963 2.4457
40 1 10.7886 -3.4804 -1.3767
41 1 9.2624 -3.0945 -2.2074
42 1 10.3813 -4.2863 -2.9109
43 1 11.1149 -6.8943 -3.8904
44 1 5.0023 -2.9392 0.2540
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000113690806.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:47:55
Heat of formation + Delta-G solvation = -93.007403 kcal
Electronic energy + Delta-G solvation = -26305.818934 eV
Core-core repulsion = 22416.295626 eV
Total energy + Delta-G solvation = -3889.523308 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 1.45 seconds
Orbital eigenvalues (eV)
-40.86848 -39.58575 -38.40643 -36.40272 -35.56613 -34.79690 -33.18901 -31.89126
-31.11669 -29.56438 -29.00115 -27.57360 -25.26938 -24.35245 -23.41103 -21.59647
-21.40534 -20.91066 -19.75316 -18.72579 -17.90086 -16.67058 -16.35528 -16.27486
-15.72168 -15.59117 -15.03225 -14.93600 -14.78415 -14.64824 -14.31878 -14.01249
-13.65771 -13.28280 -12.93928 -12.79358 -12.67952 -12.47968 -12.15074 -11.85718
-11.80137 -11.71172 -11.49156 -11.30781 -11.15616 -11.00579 -10.78876 -10.49565
-10.33170 -10.22688 -10.11106 -9.60899 -9.45725 -9.42550 -8.88953 -8.84072
-8.43298 -8.17379 -6.12602 -4.19523 0.94707 1.40937 2.30846 2.87847
3.22585 3.30151 3.33080 3.35552 3.64630 3.90565 4.09072 4.38174
4.49300 4.70005 4.89173 4.91432 4.96122 5.20033 5.20777 5.31617
5.34547 5.39412 5.42624 5.48650 5.57012 5.64528 5.75905 5.95461
5.98908 6.15387 6.23807 6.37019 6.44920 6.62810 6.65797 6.73946
6.97953 6.99521 7.00817 7.24027 7.64828 7.65719 7.79964 8.00295
8.20366 8.31486 8.70637 8.94714 9.45393 10.94899
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.020164 B = 0.002596 C = 0.002385
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1388.258736 B =10783.841407 C =11736.112498
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.152 3.848
3 C -0.165 4.165
4 N -0.739 5.739
5 C 0.699 3.301
6 O -0.561 6.561
7 N -0.685 5.685
8 C 0.143 3.857
9 C -0.122 4.122
10 C -0.116 4.116
11 C -0.077 4.077
12 C -0.093 4.093
13 C 0.494 3.506
14 O -0.511 6.511
15 O -0.351 6.351
16 C 0.216 3.784
17 H 0.047 0.953
18 C -0.155 4.155
19 C -0.520 4.520
20 H 0.069 0.931
21 C 0.062 3.938
22 N -0.889 5.889
23 Si 0.913 3.087
24 H -0.275 1.275
25 H -0.285 1.285
26 H -0.274 1.274
27 C -0.062 4.062
28 H 0.059 0.941
29 H 0.074 0.926
30 H 0.062 0.938
31 H 0.092 0.908
32 H 0.054 0.946
33 H 0.063 0.937
34 H 0.066 0.934
35 H 0.395 0.605
36 H 0.405 0.595
37 H 0.126 0.874
38 H 0.133 0.867
39 H 0.143 0.857
40 H 0.037 0.963
41 H 0.017 0.983
42 H 0.099 0.901
43 H 0.266 0.734
44 H 0.154 0.846
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.195 13.135 14.847 27.593
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.048 3.952
3 C -0.223 4.223
4 N -0.395 5.395
5 C 0.399 3.601
6 O -0.436 6.436
7 N -0.333 5.333
8 C 0.049 3.951
9 C -0.143 4.143
10 C -0.134 4.134
11 C -0.096 4.096
12 C -0.095 4.095
13 C 0.338 3.662
14 O -0.402 6.402
15 O -0.267 6.267
16 C 0.163 3.837
17 H 0.065 0.935
18 C -0.213 4.213
19 C -0.558 4.558
20 H 0.087 0.913
21 C -0.140 4.140
22 N -0.527 5.527
23 Si 0.739 3.261
24 H -0.200 1.200
25 H -0.211 1.211
26 H -0.199 1.199
27 C -0.082 4.082
28 H 0.078 0.922
29 H 0.093 0.907
30 H 0.081 0.919
31 H 0.110 0.890
32 H 0.073 0.927
33 H 0.082 0.918
34 H 0.085 0.915
35 H 0.228 0.772
36 H 0.241 0.759
37 H 0.144 0.856
38 H 0.151 0.849
39 H 0.161 0.839
40 H 0.056 0.944
41 H 0.036 0.964
42 H 0.118 0.882
43 H 0.076 0.924
44 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges -18.694 13.160 13.337 26.468
hybrid contribution 0.024 -0.682 0.787 1.041
sum -18.670 12.478 14.124 26.529
Atomic orbital electron populations
1.22082 0.94030 1.02707 1.02941 1.20861 0.93617 0.92803 0.87968
1.22212 1.02520 0.95700 1.01908 1.45241 1.16848 1.59815 1.17569
1.15996 0.82153 0.78436 0.83471 1.91030 1.56295 1.64011 1.32276
1.42473 1.13487 1.59520 1.17843 1.17228 0.84490 0.98701 0.94681
1.21003 0.94677 1.01781 0.96854 1.20898 0.94531 0.99402 0.98618
1.21592 1.00577 0.96265 0.91163 1.19322 0.94669 1.02602 0.92920
1.20971 0.81694 0.75884 0.87648 1.90777 1.63508 1.53393 1.32498
1.86525 1.26991 1.69763 1.43432 1.20648 0.93347 0.91613 0.78053
0.93521 1.22162 0.98989 0.97071 1.03064 1.20984 1.23591 1.17155
0.94059 0.91321 1.24893 0.97015 0.97452 0.94676 1.69892 1.42631
1.41505 0.98667 0.86324 0.80806 0.81328 0.77595 1.20010 1.21077
1.19948 1.21426 0.94244 0.93330 0.99198 0.92159 0.90687 0.91894
0.89010 0.92675 0.91809 0.91525 0.77159 0.75944 0.85566 0.84940
0.83920 0.94411 0.96420 0.88241 0.92368 0.82809
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.78 9.38 37.16 0.35 -0.43 16
2 C 0.15 1.21 3.18 -67.93 -0.22 0.99 16
3 C -0.16 -1.29 9.48 37.15 0.35 -0.93 16
4 N -0.74 -5.82 5.08 -58.68 -0.30 -6.12 16
5 C 0.70 8.46 8.37 -86.92 -0.73 7.73 16
6 O -0.56 -9.74 13.44 5.29 0.07 -9.67 16
7 N -0.69 -6.82 5.34 -14.26 -0.08 -6.90 16
8 C 0.14 1.87 6.29 -83.73 -0.53 1.34 16
9 C -0.12 -1.29 9.96 -39.31 -0.39 -1.68 16
10 C -0.12 -1.33 10.02 -39.67 -0.40 -1.73 16
11 C -0.08 -1.17 9.61 -39.15 -0.38 -1.55 16
12 C -0.09 -1.75 5.87 -105.00 -0.62 -2.36 16
13 C 0.49 11.66 7.87 34.61 0.27 11.93 16
14 O -0.51 -13.54 15.60 -19.24 -0.30 -13.84 16
15 O -0.35 -8.85 9.11 -40.54 -0.37 -9.21 16
16 C 0.22 6.07 2.56 -27.89 -0.07 6.00 16
17 H 0.05 1.45 7.16 -51.93 -0.37 1.08 16
18 C -0.16 -4.14 9.33 37.16 0.35 -3.80 16
19 C -0.52 -14.97 8.90 -34.44 -0.31 -15.28 16
20 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16
21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16
22 N -0.89 -25.93 11.32 55.43 0.63 -25.30 16
23 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16
24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16
26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
27 C -0.06 -1.07 8.24 -38.97 -0.32 -1.39 16
28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16
29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
31 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16
32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
34 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16
35 H 0.39 1.72 8.62 -40.82 -0.35 1.37 16
36 H 0.41 2.27 8.84 -40.82 -0.36 1.91 16
37 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16
38 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16
39 H 0.14 2.15 7.60 -52.49 -0.40 1.76 16
40 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16
41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
42 H 0.10 2.80 6.07 -51.93 -0.32 2.49 16
43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
44 H 0.15 3.09 5.81 -52.49 -0.30 2.78 16
LS Contribution 374.19 15.07 5.64 5.64
Total: -1.00 -35.92 374.19 -8.72 -44.65
By element:
Atomic # 1 Polarization: 10.10 SS G_CDS: -6.27 Total: 3.83 kcal
Atomic # 6 Polarization: 3.21 SS G_CDS: -2.73 Total: 0.48 kcal
Atomic # 7 Polarization: -38.57 SS G_CDS: 0.25 Total: -38.32 kcal
Atomic # 8 Polarization: -32.13 SS G_CDS: -0.60 Total: -32.72 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -35.92 -8.72 -44.65 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113690806.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.361 kcal
(2) G-P(sol) polarization free energy of solvation -35.923 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.45 seconds