Wall clock time and date at job start Tue Mar 31 2020 13:47:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52994 * 109.47373 * 2 1
4 4 N 1.46501 * 109.46899 * 120.00335 * 2 1 3
5 5 C 1.34773 * 120.00209 * 155.00182 * 4 2 1
6 6 O 1.21589 * 119.99683 * 359.97438 * 5 4 2
7 7 N 1.34780 * 120.00307 * 179.97438 * 5 4 2
8 8 C 1.39979 * 119.99872 * 184.60975 * 7 5 4
9 9 C 1.38988 * 119.99398 * 144.87402 * 8 7 5
10 10 C 1.38221 * 120.23385 * 180.02562 * 9 8 7
11 11 C 1.38006 * 120.22949 * 359.73877 * 10 9 8
12 12 C 1.39633 * 119.98733 * 0.51252 * 11 10 9
13 13 C 1.47739 * 120.12001 * 179.76587 * 12 11 10
14 14 O 1.21462 * 120.00134 * 179.72188 * 13 12 11
15 15 O 1.34717 * 119.99813 * 359.72487 * 13 12 11
16 16 C 1.45202 * 116.99956 * 179.97438 * 15 13 12
17 17 H 1.09002 * 109.46831 * 329.99984 * 16 15 13
18 18 C 1.52998 * 109.47058 * 89.99902 * 16 15 13
19 19 C 1.50693 * 109.46953 * 210.00165 * 16 15 13
20 20 H 1.08008 * 120.00427 * 359.97438 * 19 16 15
21 21 C 1.37882 * 119.99785 * 180.02562 * 19 16 15
22 22 N 1.31506 * 120.00282 * 359.97438 * 21 19 16
23 23 Si 1.86807 * 119.99725 * 179.97438 * 21 19 16
24 24 H 1.48498 * 109.46914 * 60.00204 * 23 21 19
25 25 H 1.48502 * 109.46608 * 179.97438 * 23 21 19
26 26 H 1.48496 * 109.47249 * 299.99856 * 23 21 19
27 27 C 1.38575 * 119.99712 * 324.88974 * 8 7 5
28 28 H 1.09001 * 109.46944 * 300.00154 * 1 2 3
29 29 H 1.09002 * 109.47391 * 59.99900 * 1 2 3
30 30 H 1.08998 * 109.47478 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46944 * 239.99845 * 2 1 3
32 32 H 1.09001 * 109.47211 * 60.00009 * 3 2 1
33 33 H 1.08999 * 109.47243 * 180.02562 * 3 2 1
34 34 H 1.09008 * 109.47050 * 299.99949 * 3 2 1
35 35 H 0.96998 * 120.00036 * 334.99112 * 4 2 1
36 36 H 0.97000 * 119.99405 * 4.60466 * 7 5 4
37 37 H 1.08001 * 119.88775 * 359.97438 * 9 8 7
38 38 H 1.08005 * 119.88611 * 180.02562 * 10 9 8
39 39 H 1.07997 * 120.01304 * 180.25868 * 11 10 9
40 40 H 1.09002 * 109.46774 * 60.00055 * 18 16 15
41 41 H 1.09002 * 109.47431 * 300.00295 * 18 16 15
42 42 H 1.08991 * 109.47109 * 180.02562 * 18 16 15
43 43 H 0.96994 * 120.00587 * 180.02562 * 22 21 19
44 44 H 1.08001 * 120.11359 * 0.02562 * 27 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 7 2.0183 -0.6907 1.1962
5 6 3.2402 -1.2592 1.1944
6 8 3.9372 -1.1993 0.1999
7 7 3.6897 -1.8942 2.2950
8 6 4.9943 -2.4005 2.3272
9 6 5.7187 -2.3793 3.5132
10 6 7.0075 -2.8774 3.5505
11 6 7.5820 -3.4043 2.4116
12 6 6.8647 -3.4255 1.2139
13 6 7.4787 -3.9841 -0.0083
14 8 6.8509 -4.0061 -1.0478
15 8 8.7350 -4.4691 0.0304
16 6 9.2739 -5.0028 -1.2078
17 1 8.4624 -5.4082 -1.8123
18 6 9.9772 -3.8858 -1.9813
19 6 10.2621 -6.0967 -0.8951
20 1 10.4653 -6.3637 0.1315
21 6 10.9079 -6.7558 -1.9197
22 7 10.6609 -6.4304 -3.1697
23 14 12.1335 -8.1113 -1.5320
24 1 11.4511 -9.1958 -0.7815
25 1 12.6845 -8.6572 -2.7984
26 1 13.2386 -7.5587 -0.7083
27 6 5.5634 -2.9225 1.1766
28 1 -0.3633 0.5139 0.8900
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 1.8933 -0.5139 -0.8900
32 1 1.6767 1.9563 0.8900
33 1 3.1300 1.4424 -0.0005
34 1 1.6767 1.9563 -0.8901
35 1 1.4622 -0.7387 1.9895
36 1 3.1090 -2.0003 3.0648
37 1 5.2735 -1.9714 4.4086
38 1 7.5653 -2.8585 4.4752
39 1 8.5877 -3.7963 2.4457
40 1 10.7886 -3.4804 -1.3767
41 1 9.2624 -3.0945 -2.2074
42 1 10.3813 -4.2863 -2.9109
43 1 11.1149 -6.8943 -3.8904
44 1 5.0023 -2.9392 0.2540
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000113690806.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:47:54
Heat of formation + Delta-G solvation = -117.920078 kcal
Electronic energy + Delta-G solvation = -26306.899228 eV
Core-core repulsion = 22416.295626 eV
Total energy + Delta-G solvation = -3890.603602 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 320.157 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.92351 -41.26228 -39.66147 -37.61201 -37.18759 -35.90032 -35.33669 -32.75074
-32.38783 -31.54017 -30.11913 -28.10467 -27.50064 -25.87765 -24.38524 -23.26400
-22.45985 -21.76344 -21.50844 -19.72455 -19.34714 -18.61015 -17.98741 -17.45746
-16.96281 -16.84666 -16.68423 -16.49069 -16.06893 -15.82532 -15.41297 -14.97849
-14.89431 -14.62680 -14.35103 -14.09450 -13.92812 -13.66992 -13.24146 -13.15040
-13.07487 -13.04799 -12.84803 -12.82672 -12.70498 -12.41666 -12.32479 -12.17580
-11.95050 -11.67904 -11.61387 -11.46217 -11.19934 -11.04216 -10.62235 -10.24747
-10.04668 -9.20152 -8.29753 -6.47899 -0.31855 0.28950 1.40583 1.45412
1.46495 1.54548 1.55677 1.91045 2.02913 2.40612 2.80470 3.00550
3.13753 3.75253 3.90744 3.93637 4.10754 4.14149 4.21145 4.31025
4.38340 4.43801 4.51827 4.70521 4.73429 4.74612 4.76623 4.86472
4.92413 5.00228 5.05359 5.17364 5.24644 5.31456 5.32564 5.38252
5.40335 5.44928 5.53061 5.56658 5.84900 5.91238 5.92216 6.01369
6.56909 6.88211 6.96867 7.23338 7.45150 8.78537
Molecular weight = 320.16amu
Principal moments of inertia in cm(-1)
A = 0.020164 B = 0.002596 C = 0.002385
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1388.258736 B =10783.841407 C =11736.112498
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.147 3.853
3 C -0.159 4.159
4 N -0.717 5.717
5 C 0.691 3.309
6 O -0.621 6.621
7 N -0.666 5.666
8 C 0.145 3.855
9 C -0.088 4.088
10 C -0.097 4.097
11 C -0.082 4.082
12 C -0.128 4.128
13 C 0.487 3.513
14 O -0.558 6.558
15 O -0.351 6.351
16 C 0.216 3.784
17 H 0.002 0.998
18 C -0.142 4.142
19 C -0.547 4.547
20 H 0.073 0.927
21 C 0.013 3.987
22 N -0.920 5.920
23 Si 0.990 3.010
24 H -0.267 1.267
25 H -0.277 1.277
26 H -0.260 1.260
27 C -0.085 4.085
28 H 0.083 0.917
29 H 0.082 0.918
30 H 0.062 0.938
31 H 0.055 0.945
32 H 0.076 0.924
33 H 0.027 0.973
34 H 0.077 0.923
35 H 0.417 0.583
36 H 0.431 0.569
37 H 0.185 0.815
38 H 0.181 0.819
39 H 0.139 0.861
40 H 0.050 0.950
41 H 0.015 0.985
42 H 0.084 0.916
43 H 0.272 0.728
44 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.007 13.860 19.487 31.179
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.042 3.958
3 C -0.218 4.218
4 N -0.374 5.374
5 C 0.392 3.608
6 O -0.500 6.500
7 N -0.317 5.317
8 C 0.050 3.950
9 C -0.108 4.108
10 C -0.115 4.115
11 C -0.101 4.101
12 C -0.130 4.130
13 C 0.334 3.666
14 O -0.451 6.451
15 O -0.267 6.267
16 C 0.163 3.837
17 H 0.020 0.980
18 C -0.200 4.200
19 C -0.585 4.585
20 H 0.091 0.909
21 C -0.187 4.187
22 N -0.558 5.558
23 Si 0.812 3.188
24 H -0.192 1.192
25 H -0.202 1.202
26 H -0.185 1.185
27 C -0.106 4.106
28 H 0.102 0.898
29 H 0.101 0.899
30 H 0.081 0.919
31 H 0.073 0.927
32 H 0.095 0.905
33 H 0.047 0.953
34 H 0.096 0.904
35 H 0.254 0.746
36 H 0.271 0.729
37 H 0.202 0.798
38 H 0.199 0.801
39 H 0.157 0.843
40 H 0.069 0.931
41 H 0.034 0.966
42 H 0.102 0.898
43 H 0.081 0.919
44 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -19.581 13.909 18.054 30.047
hybrid contribution 0.128 -0.810 -0.604 1.019
sum -19.453 13.098 17.450 29.232
Atomic orbital electron populations
1.22014 0.90925 1.03239 1.04495 1.20934 0.95857 0.92368 0.86637
1.22162 1.00169 0.95882 1.03559 1.45067 1.15473 1.58366 1.18460
1.16314 0.82828 0.78600 0.83097 1.91020 1.58244 1.66103 1.34678
1.42234 1.12856 1.58418 1.18168 1.17346 0.85784 0.97754 0.94124
1.21592 0.93645 0.98437 0.97154 1.21413 0.94909 0.96667 0.98518
1.21693 1.00387 0.96849 0.91138 1.19101 0.95840 1.06014 0.92018
1.22041 0.80696 0.74670 0.89172 1.90735 1.64175 1.55444 1.34741
1.86511 1.28256 1.70092 1.41818 1.20410 0.92107 0.92302 0.78862
0.98005 1.21993 0.99046 0.96542 1.02374 1.21251 1.24416 1.18171
0.94646 0.90924 1.25949 0.98732 0.99812 0.94190 1.70029 1.43407
1.42548 0.99775 0.85133 0.78093 0.77720 0.77834 1.19183 1.20232
1.18450 1.21202 0.93944 0.95638 0.99777 0.89807 0.89901 0.91875
0.92696 0.90459 0.95326 0.90442 0.74561 0.72878 0.79823 0.80138
0.84277 0.93114 0.96568 0.89752 0.91917 0.86869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.16 9.38 71.98 0.68 -0.48 16
2 C 0.15 2.31 3.18 44.99 0.14 2.45 16
3 C -0.16 -2.43 9.48 71.98 0.68 -1.75 16
4 N -0.72 -10.51 5.08 -457.82 -2.33 -12.84 16
5 C 0.69 16.82 8.37 179.05 1.50 18.32 16
6 O -0.62 -23.36 13.44 -4.00 -0.05 -23.41 16
7 N -0.67 -11.92 5.34 -317.28 -1.70 -13.62 16
8 C 0.15 3.55 6.29 38.10 0.24 3.79 16
9 C -0.09 -1.41 9.96 22.45 0.22 -1.19 16
10 C -0.10 -1.78 10.02 22.21 0.22 -1.56 16
11 C -0.08 -2.42 9.61 22.55 0.22 -2.20 16
12 C -0.13 -5.06 5.87 -20.11 -0.12 -5.18 16
13 C 0.49 25.04 7.87 70.33 0.55 25.59 16
14 O -0.56 -32.81 15.60 19.96 0.31 -32.50 16
15 O -0.35 -18.87 9.11 -56.27 -0.51 -19.38 16
16 C 0.22 12.98 2.56 29.85 0.08 13.06 16
17 H 0.00 0.14 7.16 -2.39 -0.02 0.13 16
18 C -0.14 -8.01 9.33 71.98 0.67 -7.34 16
19 C -0.55 -32.59 8.90 25.60 0.23 -32.37 16
20 H 0.07 4.15 7.81 -2.91 -0.02 4.13 16
21 C 0.01 0.72 5.30 84.66 0.45 1.17 16
22 N -0.92 -55.31 11.32 21.45 0.24 -55.06 16
23 Si 0.99 44.10 29.54 68.60 2.03 46.13 16
24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16
25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16
26 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16
27 C -0.08 -3.12 8.24 22.67 0.19 -2.93 16
28 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16
29 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16
30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16
31 H 0.05 1.28 7.58 -2.39 -0.02 1.26 16
32 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16
33 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16
34 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16
35 H 0.42 2.39 8.62 -92.71 -0.80 1.59 16
36 H 0.43 3.07 8.84 -92.71 -0.82 2.25 16
37 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16
38 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16
39 H 0.14 4.16 7.60 -2.91 -0.02 4.13 16
40 H 0.05 2.65 8.14 -2.39 -0.02 2.64 16
41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16
42 H 0.08 5.01 6.07 -2.39 -0.01 4.99 16
43 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16
44 H 0.11 5.10 5.81 -2.91 -0.02 5.08 16
Total: -1.00 -89.09 374.19 3.36 -85.73
By element:
Atomic # 1 Polarization: 16.18 SS G_CDS: -0.58 Total: 15.59 kcal
Atomic # 6 Polarization: 3.42 SS G_CDS: 5.95 Total: 9.37 kcal
Atomic # 7 Polarization: -77.74 SS G_CDS: -3.78 Total: -81.52 kcal
Atomic # 8 Polarization: -75.04 SS G_CDS: -0.25 Total: -75.30 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal
Total: -89.09 3.36 -85.73 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113690806.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.195 kcal
(2) G-P(sol) polarization free energy of solvation -89.085 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.725 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds