Wall clock time and date at job start Tue Mar 31 2020 13:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 O 1.42902 * 109.47282 * 120.00082 * 2 1 3 5 5 C 1.35962 * 116.99905 * 84.05144 * 4 2 1 6 6 C 1.38750 * 119.97939 * 4.42621 * 5 4 2 7 7 C 1.38048 * 120.01906 * 180.02562 * 6 5 4 8 8 C 1.38917 * 119.98202 * 359.97438 * 7 6 5 9 9 N 1.39872 * 120.02514 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99832 * 35.20271 * 9 8 7 11 11 O 1.21386 * 119.99927 * 355.81471 * 10 9 8 12 12 C 1.49332 * 119.99632 * 175.80880 * 10 9 8 13 13 O 1.21360 * 120.00418 * 359.97438 * 12 10 9 14 14 N 1.34780 * 119.99531 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99700 * 180.02562 * 14 12 10 16 16 H 1.09001 * 109.47775 * 34.99863 * 15 14 12 17 17 C 1.52998 * 109.47167 * 274.99803 * 15 14 12 18 18 C 1.50699 * 109.47209 * 154.99813 * 15 14 12 19 19 H 1.07998 * 119.99816 * 359.97438 * 18 15 14 20 20 C 1.37879 * 120.00279 * 179.97438 * 18 15 14 21 21 N 1.31511 * 120.00255 * 179.72463 * 20 18 15 22 22 Si 1.86799 * 119.99994 * 359.97438 * 20 18 15 23 23 H 1.48501 * 109.47374 * 269.72603 * 22 20 18 24 24 H 1.48502 * 109.46899 * 29.72582 * 22 20 18 25 25 H 1.48501 * 109.47401 * 149.72260 * 22 20 18 26 26 C 1.38925 * 119.95950 * 0.27188 * 8 7 6 27 27 C 1.38054 * 119.97487 * 359.47156 * 26 8 7 28 28 H 1.09002 * 109.46968 * 299.99903 * 1 2 3 29 29 H 1.08996 * 109.47557 * 60.00090 * 1 2 3 30 30 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46968 * 240.00097 * 2 1 3 32 32 H 1.08997 * 109.47072 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47086 * 299.99924 * 3 2 1 34 34 H 1.09002 * 109.47081 * 60.00166 * 3 2 1 35 35 H 1.07996 * 119.98720 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.01090 * 179.97438 * 7 6 5 37 37 H 0.97003 * 119.99584 * 215.21464 * 9 8 7 38 38 H 0.96996 * 119.99980 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.47172 * 60.00230 * 17 15 14 40 40 H 1.09004 * 109.47500 * 179.97438 * 17 15 14 41 41 H 1.09004 * 109.47528 * 300.00063 * 17 15 14 42 42 H 0.96997 * 120.00225 * 180.27112 * 21 20 18 43 43 H 1.07995 * 120.01531 * 179.70594 * 26 8 7 44 44 H 1.08003 * 119.99470 * 180.25137 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0937 -2.0290 1.1045 6 6 1.8162 -2.6878 -0.0847 7 6 1.9042 -4.0640 -0.1487 8 6 2.2712 -4.7893 0.9778 9 7 2.3611 -6.1836 0.9138 10 6 2.7957 -6.7798 -0.2141 11 8 3.0365 -6.1126 -1.1991 12 6 2.9809 -8.2611 -0.2519 13 8 2.7406 -8.9281 0.7332 14 7 3.4159 -8.8572 -1.3797 15 6 3.5971 -10.3105 -1.4169 16 1 2.8312 -10.7880 -0.8059 17 6 4.9810 -10.6661 -0.8698 18 6 3.4795 -10.7951 -2.8390 19 1 3.2884 -10.0910 -3.6354 20 6 3.6158 -12.1373 -3.1235 21 7 3.5077 -12.5609 -4.3639 22 14 3.9470 -13.3550 -1.7463 23 1 5.4126 -13.5058 -1.5606 24 1 3.3372 -12.8564 -0.4874 25 1 3.3543 -14.6710 -2.0959 26 6 2.5439 -4.1293 2.1695 27 6 2.4606 -2.7526 2.2301 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.5313 -2.1237 -0.9604 36 1 1.6877 -4.5766 -1.0743 37 1 2.1106 -6.7215 1.6812 38 1 3.6083 -8.3241 -2.1668 39 1 5.0661 -10.3156 0.1588 40 1 5.1157 -11.7474 -0.8971 41 1 5.7470 -10.1887 -1.4809 42 1 3.5997 -13.5056 -4.5635 43 1 2.8247 -4.6926 3.0470 44 1 2.6765 -2.2388 3.1553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123058867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:25 Heat of formation + Delta-G solvation = -74.784297 kcal Electronic energy + Delta-G solvation = -26005.302975 eV Core-core repulsion = 22116.569881 eV Total energy + Delta-G solvation = -3888.733095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00216 -40.18078 -38.70582 -37.51565 -35.48697 -34.57944 -33.28260 -32.44489 -31.19269 -30.12954 -29.00639 -27.66368 -25.39279 -24.88877 -23.77477 -22.64890 -21.12440 -20.79532 -19.79807 -18.83601 -18.50487 -17.40673 -16.73790 -16.22677 -15.89315 -15.74844 -15.41274 -15.32646 -14.89759 -14.44160 -14.35768 -13.98971 -13.69836 -13.52415 -13.30019 -13.13117 -12.94658 -12.78307 -12.70386 -12.57260 -12.29088 -12.27735 -11.94889 -11.67723 -11.44331 -11.36549 -11.18026 -10.90755 -10.83980 -10.26861 -10.01338 -9.74974 -9.33986 -9.29214 -9.13257 -8.85084 -8.40522 -7.90673 -6.26058 -4.30132 1.00875 1.16338 1.77837 2.56841 2.91558 3.18946 3.31281 3.33629 3.42840 3.65681 3.96550 4.25674 4.35208 4.49259 4.56724 4.69954 4.74559 4.88869 4.99315 5.07545 5.12328 5.14300 5.27233 5.30989 5.35402 5.38750 5.66360 5.71485 5.74771 5.84335 6.12711 6.18963 6.19925 6.22361 6.24800 6.42722 6.60913 6.69657 6.90105 7.08054 7.13678 7.20519 7.36477 7.72771 8.01812 8.35604 8.48610 8.74040 9.32257 10.85849 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.002223 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.317072 B =12594.098698 C =13146.562304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 C -0.148 4.148 4 O -0.312 6.312 5 C 0.117 3.883 6 C -0.192 4.192 7 C -0.078 4.078 8 C 0.107 3.893 9 N -0.648 5.648 10 C 0.508 3.492 11 O -0.505 6.505 12 C 0.498 3.502 13 O -0.537 6.537 14 N -0.661 5.661 15 C 0.235 3.765 16 H 0.054 0.946 17 C -0.163 4.163 18 C -0.539 4.539 19 H 0.083 0.917 20 C 0.080 3.920 21 N -0.888 5.888 22 Si 0.886 3.114 23 H -0.275 1.275 24 H -0.262 1.262 25 H -0.293 1.293 26 C -0.100 4.100 27 C -0.135 4.135 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.144 0.856 37 H 0.422 0.578 38 H 0.409 0.591 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.269 0.731 43 H 0.135 0.865 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 24.158 11.541 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.226 6.226 5 C 0.071 3.929 6 C -0.211 4.211 7 C -0.098 4.098 8 C 0.013 3.987 9 N -0.295 5.295 10 C 0.291 3.709 11 O -0.378 6.378 12 C 0.276 3.724 13 O -0.415 6.415 14 N -0.310 5.310 15 C 0.132 3.868 16 H 0.072 0.928 17 C -0.221 4.221 18 C -0.577 4.577 19 H 0.101 0.899 20 C -0.125 4.125 21 N -0.525 5.525 22 Si 0.715 3.285 23 H -0.202 1.202 24 H -0.186 1.186 25 H -0.220 1.220 26 C -0.121 4.121 27 C -0.155 4.155 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.260 0.740 38 H 0.244 0.756 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.153 0.847 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.895 24.035 11.498 26.927 hybrid contribution 0.159 -0.840 0.341 0.921 sum -3.735 23.195 11.839 26.308 Atomic orbital electron populations 1.22356 0.94997 1.03223 1.03085 1.22462 0.94354 0.93657 0.87779 1.21845 1.02172 0.93483 1.03022 1.86121 1.81032 1.16207 1.39238 1.18982 0.97260 0.82606 0.94029 1.21169 1.07523 0.94961 0.97461 1.21143 0.96569 0.93204 0.98843 1.17676 1.03120 0.82510 0.95390 1.43138 1.63990 1.05088 1.17295 1.20766 0.77168 0.89856 0.83102 1.90737 1.47894 1.65538 1.33661 1.19707 0.80447 0.87020 0.85195 1.90727 1.51471 1.64973 1.34358 1.46130 1.61508 1.10665 1.12686 1.19316 0.93791 0.75067 0.98644 0.92806 1.22468 0.99892 1.00568 0.99168 1.20991 1.51650 0.94329 0.90721 0.89872 1.24824 0.94032 0.97976 0.95623 1.69858 1.48536 1.15851 1.18209 0.86878 0.78514 0.80309 0.82808 1.20180 1.18634 1.21999 1.20750 1.00428 0.93576 0.97314 1.20166 1.05287 0.92547 0.97466 0.91484 0.90985 0.91763 0.90633 0.91613 0.90508 0.91501 0.84941 0.83856 0.74000 0.75551 0.94359 0.93039 0.92435 0.92138 0.84731 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.31 37.16 0.35 -0.80 16 2 C 0.07 0.54 2.87 -26.73 -0.08 0.47 16 3 C -0.15 -0.83 9.56 37.16 0.36 -0.48 16 4 O -0.31 -3.11 9.81 -19.62 -0.19 -3.30 16 5 C 0.12 1.25 6.55 -39.20 -0.26 0.99 16 6 C -0.19 -2.10 8.44 -39.46 -0.33 -2.43 16 7 C -0.08 -0.99 8.69 -39.40 -0.34 -1.33 16 8 C 0.11 1.32 6.29 -83.68 -0.53 0.80 16 9 N -0.65 -8.48 5.32 -10.27 -0.05 -8.54 16 10 C 0.51 8.19 7.72 -11.64 -0.09 8.10 16 11 O -0.50 -8.79 13.93 5.47 0.08 -8.72 16 12 C 0.50 9.29 7.85 -11.64 -0.09 9.20 16 13 O -0.54 -10.89 16.14 5.49 0.09 -10.80 16 14 N -0.66 -13.37 5.06 -55.40 -0.28 -13.65 16 15 C 0.23 5.47 2.15 -69.08 -0.15 5.32 16 16 H 0.05 1.35 6.64 -51.93 -0.34 1.00 16 17 C -0.16 -3.53 8.96 37.16 0.33 -3.20 16 18 C -0.54 -14.40 9.31 -34.44 -0.32 -14.72 16 19 H 0.08 2.36 7.98 -52.49 -0.42 1.94 16 20 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 21 N -0.89 -25.98 13.96 55.43 0.77 -25.20 16 22 Si 0.89 21.16 24.37 -169.99 -4.14 17.02 16 23 H -0.28 -6.36 6.88 56.52 0.39 -5.97 16 24 H -0.26 -6.13 6.52 56.52 0.37 -5.76 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C -0.10 -1.02 9.96 -39.39 -0.39 -1.42 16 27 C -0.14 -1.36 9.98 -39.46 -0.39 -1.75 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.47 7.52 -51.93 -0.39 0.08 16 31 H 0.08 0.54 5.88 -51.93 -0.31 0.23 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.13 1.21 5.75 -52.49 -0.30 0.91 16 36 H 0.14 1.99 6.24 -52.48 -0.33 1.67 16 37 H 0.42 4.80 8.30 -40.82 -0.34 4.46 16 38 H 0.41 7.85 8.01 -40.82 -0.33 7.53 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -31.04 363.20 -6.20 -37.25 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.91 Total: 9.63 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.04 Total: 0.85 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.44 Total: -47.39 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.03 Total: -22.83 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.04 -6.20 -37.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123058867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.539 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds