Wall clock time and date at job start Tue Mar 31 2020 13:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47200 * 2 1 4 4 O 1.42902 * 109.47282 * 120.00082 * 2 1 3 5 5 C 1.35962 * 116.99905 * 84.05144 * 4 2 1 6 6 C 1.38750 * 119.97939 * 4.42621 * 5 4 2 7 7 C 1.38048 * 120.01906 * 180.02562 * 6 5 4 8 8 C 1.38917 * 119.98202 * 359.97438 * 7 6 5 9 9 N 1.39872 * 120.02514 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99832 * 35.20271 * 9 8 7 11 11 O 1.21386 * 119.99927 * 355.81471 * 10 9 8 12 12 C 1.49332 * 119.99632 * 175.80880 * 10 9 8 13 13 O 1.21360 * 120.00418 * 359.97438 * 12 10 9 14 14 N 1.34780 * 119.99531 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99700 * 180.02562 * 14 12 10 16 16 H 1.09001 * 109.47775 * 34.99863 * 15 14 12 17 17 C 1.52998 * 109.47167 * 274.99803 * 15 14 12 18 18 C 1.50699 * 109.47209 * 154.99813 * 15 14 12 19 19 H 1.07998 * 119.99816 * 359.97438 * 18 15 14 20 20 C 1.37879 * 120.00279 * 179.97438 * 18 15 14 21 21 N 1.31511 * 120.00255 * 179.72463 * 20 18 15 22 22 Si 1.86799 * 119.99994 * 359.97438 * 20 18 15 23 23 H 1.48501 * 109.47374 * 269.72603 * 22 20 18 24 24 H 1.48502 * 109.46899 * 29.72582 * 22 20 18 25 25 H 1.48501 * 109.47401 * 149.72260 * 22 20 18 26 26 C 1.38925 * 119.95950 * 0.27188 * 8 7 6 27 27 C 1.38054 * 119.97487 * 359.47156 * 26 8 7 28 28 H 1.09002 * 109.46968 * 299.99903 * 1 2 3 29 29 H 1.08996 * 109.47557 * 60.00090 * 1 2 3 30 30 H 1.09001 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46968 * 240.00097 * 2 1 3 32 32 H 1.08997 * 109.47072 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47086 * 299.99924 * 3 2 1 34 34 H 1.09002 * 109.47081 * 60.00166 * 3 2 1 35 35 H 1.07996 * 119.98720 * 0.02562 * 6 5 4 36 36 H 1.08003 * 120.01090 * 179.97438 * 7 6 5 37 37 H 0.97003 * 119.99584 * 215.21464 * 9 8 7 38 38 H 0.96996 * 119.99980 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.47172 * 60.00230 * 17 15 14 40 40 H 1.09004 * 109.47500 * 179.97438 * 17 15 14 41 41 H 1.09004 * 109.47528 * 300.00063 * 17 15 14 42 42 H 0.96997 * 120.00225 * 180.27112 * 21 20 18 43 43 H 1.07995 * 120.01531 * 179.70594 * 26 8 7 44 44 H 1.08003 * 119.99470 * 180.25137 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0937 -2.0290 1.1045 6 6 1.8162 -2.6878 -0.0847 7 6 1.9042 -4.0640 -0.1487 8 6 2.2712 -4.7893 0.9778 9 7 2.3611 -6.1836 0.9138 10 6 2.7957 -6.7798 -0.2141 11 8 3.0365 -6.1126 -1.1991 12 6 2.9809 -8.2611 -0.2519 13 8 2.7406 -8.9281 0.7332 14 7 3.4159 -8.8572 -1.3797 15 6 3.5971 -10.3105 -1.4169 16 1 2.8312 -10.7880 -0.8059 17 6 4.9810 -10.6661 -0.8698 18 6 3.4795 -10.7951 -2.8390 19 1 3.2884 -10.0910 -3.6354 20 6 3.6158 -12.1373 -3.1235 21 7 3.5077 -12.5609 -4.3639 22 14 3.9470 -13.3550 -1.7463 23 1 5.4126 -13.5058 -1.5606 24 1 3.3372 -12.8564 -0.4874 25 1 3.3543 -14.6710 -2.0959 26 6 2.5439 -4.1293 2.1695 27 6 2.4606 -2.7526 2.2301 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.5313 -2.1237 -0.9604 36 1 1.6877 -4.5766 -1.0743 37 1 2.1106 -6.7215 1.6812 38 1 3.6083 -8.3241 -2.1668 39 1 5.0661 -10.3156 0.1588 40 1 5.1157 -11.7474 -0.8971 41 1 5.7470 -10.1887 -1.4809 42 1 3.5997 -13.5056 -4.5635 43 1 2.8247 -4.6926 3.0470 44 1 2.6765 -2.2388 3.1553 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123058867.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:24 Heat of formation + Delta-G solvation = -96.624184 kcal Electronic energy + Delta-G solvation = -26006.250024 eV Core-core repulsion = 22116.569881 eV Total energy + Delta-G solvation = -3889.680143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.15205 -41.15343 -40.01254 -38.54089 -37.14435 -35.71770 -34.42468 -33.93381 -32.04039 -31.89263 -29.96075 -28.14912 -27.28664 -26.29380 -24.57451 -23.77311 -22.37462 -21.76441 -21.31668 -20.15017 -19.34337 -18.59980 -18.43518 -17.41768 -17.38824 -17.02809 -16.56870 -16.41705 -15.94942 -15.67396 -15.33713 -15.12724 -15.02191 -14.83873 -14.49926 -14.31260 -14.15144 -13.90024 -13.72167 -13.54077 -13.28942 -13.25306 -13.16032 -12.92158 -12.83127 -12.67764 -12.29434 -12.15876 -11.91721 -11.61030 -11.56450 -11.34186 -10.96308 -10.90044 -10.66750 -10.13211 -10.04057 -8.81151 -8.38721 -6.47165 -0.04071 0.30664 0.57259 1.28248 1.30348 1.37869 1.47083 2.07863 2.23363 2.26244 2.65601 2.73280 2.96694 3.39021 3.76820 3.81370 3.91844 4.01013 4.16316 4.20189 4.38264 4.39109 4.45331 4.51032 4.62077 4.63215 4.71244 4.81975 4.88310 4.91515 4.93954 5.06514 5.16959 5.19887 5.25022 5.25719 5.31205 5.32676 5.36383 5.44773 5.70471 5.89174 6.11112 6.43578 6.48081 6.56376 6.72438 6.93557 7.20323 8.76552 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.031407 B = 0.002223 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.317072 B =12594.098698 C =13146.562304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.064 3.936 3 C -0.145 4.145 4 O -0.320 6.320 5 C 0.116 3.884 6 C -0.195 4.195 7 C -0.093 4.093 8 C 0.082 3.918 9 N -0.629 5.629 10 C 0.515 3.485 11 O -0.522 6.522 12 C 0.502 3.498 13 O -0.550 6.550 14 N -0.667 5.667 15 C 0.240 3.760 16 H 0.040 0.960 17 C -0.158 4.158 18 C -0.541 4.541 19 H 0.052 0.948 20 C 0.027 3.973 21 N -0.933 5.933 22 Si 0.943 3.057 23 H -0.258 1.258 24 H -0.253 1.253 25 H -0.292 1.292 26 C -0.088 4.088 27 C -0.137 4.137 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.145 0.855 36 H 0.125 0.875 37 H 0.431 0.569 38 H 0.412 0.588 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.272 0.728 43 H 0.162 0.838 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 25.607 13.875 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.009 3.991 3 C -0.202 4.202 4 O -0.234 6.234 5 C 0.070 3.930 6 C -0.214 4.214 7 C -0.113 4.113 8 C -0.011 4.011 9 N -0.276 5.276 10 C 0.297 3.703 11 O -0.398 6.398 12 C 0.282 3.718 13 O -0.429 6.429 14 N -0.317 5.317 15 C 0.136 3.864 16 H 0.058 0.942 17 C -0.216 4.216 18 C -0.579 4.579 19 H 0.071 0.929 20 C -0.173 4.173 21 N -0.571 5.571 22 Si 0.769 3.231 23 H -0.184 1.184 24 H -0.177 1.177 25 H -0.220 1.220 26 C -0.108 4.108 27 C -0.156 4.156 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.163 0.837 36 H 0.143 0.857 37 H 0.271 0.729 38 H 0.248 0.752 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.179 0.821 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.584 25.531 13.871 29.276 hybrid contribution -0.018 -1.090 -0.395 1.159 sum -3.603 24.441 13.476 28.142 Atomic orbital electron populations 1.22339 0.94241 1.02736 1.04020 1.22734 0.95043 0.94381 0.86989 1.21868 1.01929 0.92373 1.04067 1.86126 1.81013 1.15725 1.40556 1.19178 0.96529 0.83158 0.94096 1.21265 1.07490 0.94354 0.98337 1.21100 0.97700 0.94029 0.98491 1.17854 1.05031 0.81805 0.96368 1.42960 1.62542 1.05719 1.16406 1.20160 0.77875 0.88361 0.83904 1.90745 1.49225 1.65330 1.34464 1.20046 0.79265 0.88242 0.84252 1.90710 1.51758 1.65790 1.34684 1.45971 1.62458 1.09607 1.13647 1.19025 0.94545 0.76747 0.96088 0.94219 1.22371 0.98614 1.00408 1.00198 1.21195 1.50771 0.94035 0.91883 0.92946 1.25631 0.93920 0.99916 0.97797 1.69982 1.50279 1.16474 1.20372 0.85939 0.79334 0.77750 0.80028 1.18365 1.17737 1.21965 1.21000 0.98871 0.93788 0.97155 1.20494 1.04460 0.92551 0.98121 0.91425 0.89206 0.92923 0.90586 0.92007 0.88590 0.91347 0.83748 0.85663 0.72944 0.75170 0.92637 0.93379 0.91755 0.91911 0.82072 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 9.31 71.98 0.67 -1.31 16 2 C 0.06 0.84 2.87 30.59 0.09 0.93 16 3 C -0.15 -1.36 9.56 71.98 0.69 -0.67 16 4 O -0.32 -5.84 9.81 -93.12 -0.91 -6.76 16 5 C 0.12 2.30 6.55 22.51 0.15 2.45 16 6 C -0.20 -4.12 8.44 22.35 0.19 -3.93 16 7 C -0.09 -2.34 8.69 22.39 0.19 -2.15 16 8 C 0.08 1.94 6.29 38.19 0.24 2.18 16 9 N -0.63 -15.73 5.32 -304.75 -1.62 -17.35 16 10 C 0.52 16.34 7.72 87.23 0.67 17.02 16 11 O -0.52 -18.29 13.93 -3.36 -0.05 -18.34 16 12 C 0.50 18.46 7.85 87.23 0.68 19.15 16 13 O -0.55 -21.69 16.14 -3.28 -0.05 -21.74 16 14 N -0.67 -27.02 5.06 -447.56 -2.27 -29.29 16 15 C 0.24 11.11 2.15 44.24 0.10 11.20 16 16 H 0.04 1.97 6.64 -2.39 -0.02 1.95 16 17 C -0.16 -6.58 8.96 71.98 0.64 -5.93 16 18 C -0.54 -29.43 9.31 25.60 0.24 -29.19 16 19 H 0.05 3.10 7.98 -2.91 -0.02 3.08 16 20 C 0.03 1.53 5.45 84.66 0.46 1.99 16 21 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 22 Si 0.94 43.17 24.37 68.60 1.67 44.84 16 23 H -0.26 -11.06 6.88 99.48 0.68 -10.38 16 24 H -0.25 -11.16 6.52 99.48 0.65 -10.52 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 26 C -0.09 -1.58 9.96 22.39 0.22 -1.36 16 27 C -0.14 -2.41 9.98 22.35 0.22 -2.19 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.72 7.52 -2.39 -0.02 0.70 16 31 H 0.08 0.99 5.88 -2.39 -0.01 0.97 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.15 2.55 5.75 -2.91 -0.02 2.53 16 36 H 0.13 3.58 6.24 -2.91 -0.02 3.56 16 37 H 0.43 9.07 8.30 -92.71 -0.77 8.30 16 38 H 0.41 16.14 8.01 -92.71 -0.74 15.39 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.05 2.03 3.27 -2.39 -0.01 2.02 16 41 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 42 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -66.70 363.20 1.99 -64.71 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.54 Total: 31.11 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.46 Total: 8.18 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -3.59 Total: -102.01 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -1.01 Total: -46.84 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.67 Total: 44.84 kcal Total: -66.70 1.99 -64.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123058867.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.912 kcal (2) G-P(sol) polarization free energy of solvation -66.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds