Wall clock time and date at job start Tue Mar 31 2020 12:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47090 * 2 1 4 4 O 1.42897 * 109.47246 * 179.97438 * 3 2 1 5 5 C 1.35950 * 117.00093 * 180.02562 * 4 3 2 6 6 C 1.38753 * 119.98205 * 180.02562 * 5 4 3 7 7 C 1.38056 * 120.02232 * 180.02562 * 6 5 4 8 8 C 1.38918 * 119.97751 * 359.97438 * 7 6 5 9 9 N 1.39867 * 120.01694 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00465 * 34.77869 * 9 8 7 11 11 O 1.21395 * 119.99545 * 5.35570 * 10 9 8 12 12 C 1.49328 * 120.00363 * 185.34541 * 10 9 8 13 13 O 1.21365 * 120.00083 * 0.02562 * 12 10 9 14 14 N 1.34770 * 120.00146 * 180.02562 * 12 10 9 15 15 C 1.46502 * 120.00232 * 180.02562 * 14 12 10 16 16 H 1.09000 * 109.47057 * 324.99694 * 15 14 12 17 17 C 1.52997 * 109.47404 * 85.00060 * 15 14 12 18 18 C 1.50704 * 109.47296 * 204.99945 * 15 14 12 19 19 H 1.08005 * 119.99957 * 334.91463 * 18 15 14 20 20 C 1.37874 * 120.00226 * 154.91327 * 18 15 14 21 21 N 1.31513 * 119.99936 * 174.96229 * 20 18 15 22 22 Si 1.86801 * 119.99768 * 354.95999 * 20 18 15 23 23 H 1.48501 * 109.46813 * 275.02202 * 22 20 18 24 24 H 1.48496 * 109.47448 * 35.02253 * 22 20 18 25 25 H 1.48499 * 109.46967 * 155.02654 * 22 20 18 26 26 C 1.38915 * 119.96180 * 0.27052 * 8 7 6 27 27 C 1.38058 * 119.97806 * 359.47786 * 26 8 7 28 28 H 1.09003 * 109.46972 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47173 * 299.99838 * 1 2 3 30 30 H 1.08994 * 109.47349 * 59.99907 * 1 2 3 31 31 H 1.09000 * 109.47173 * 240.00162 * 2 1 3 32 32 H 1.08996 * 109.46969 * 120.00461 * 2 1 3 33 33 H 1.09010 * 109.46905 * 60.00068 * 3 2 1 34 34 H 1.09003 * 109.47078 * 300.00511 * 3 2 1 35 35 H 1.08002 * 119.98298 * 0.02562 * 6 5 4 36 36 H 1.07997 * 120.00919 * 179.97438 * 7 6 5 37 37 H 0.97000 * 119.99911 * 214.78593 * 9 8 7 38 38 H 0.97008 * 120.00119 * 0.02562 * 14 12 10 39 39 H 1.09006 * 109.46863 * 294.99141 * 17 15 14 40 40 H 1.08993 * 109.47341 * 54.99134 * 17 15 14 41 41 H 1.09001 * 109.47464 * 174.99734 * 17 15 14 42 42 H 0.96999 * 119.99830 * 180.02562 * 21 20 18 43 43 H 1.07996 * 120.00964 * 179.69761 * 26 8 7 44 44 H 1.07995 * 119.98969 * 180.25141 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0862 2.6538 0.0012 6 6 5.4718 2.7260 0.0013 7 6 6.0995 3.9557 0.0025 8 6 5.3432 5.1210 0.0030 9 7 5.9782 6.3672 0.0037 10 6 7.1384 6.5328 -0.6620 11 8 7.5825 5.6302 -1.3414 12 6 7.8774 7.8267 -0.5640 13 8 7.4335 8.7291 0.1155 14 7 9.0372 7.9925 -1.2300 15 6 9.7625 9.2617 -1.1334 16 1 9.0495 10.0832 -1.0631 17 6 10.6499 9.2485 0.1128 18 6 10.6203 9.4447 -2.3589 19 1 10.9531 8.5831 -2.9187 20 6 10.9804 10.7120 -2.7655 21 7 11.8089 10.8681 -3.7748 22 14 10.2913 12.2070 -1.8827 23 1 8.9660 12.5533 -2.4563 24 1 10.1407 11.9026 -0.4371 25 1 11.2192 13.3538 -2.0531 26 6 3.9560 5.0478 0.0081 27 6 3.3301 3.8172 0.0017 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6766 1.9563 -0.8900 35 1 6.0595 1.8199 0.0004 36 1 7.1780 4.0116 0.0029 37 1 5.5836 7.1123 0.4833 38 1 9.3918 7.2714 -1.7734 39 1 10.0239 9.2057 1.0042 40 1 11.3025 8.3759 0.0850 41 1 11.2555 10.1545 0.1374 42 1 12.0625 11.7597 -4.0606 43 1 3.3673 5.9532 0.0135 44 1 2.2517 3.7601 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123214607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:12 Heat of formation + Delta-G solvation = -109.797847 kcal Electronic energy + Delta-G solvation = -25627.520512 eV Core-core repulsion = 21737.269116 eV Total energy + Delta-G solvation = -3890.251396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.12713 -41.04401 -39.94302 -38.47392 -37.05540 -35.73549 -34.60653 -34.36666 -32.12426 -31.79175 -30.09695 -27.56339 -27.33053 -26.08880 -24.26479 -23.32108 -22.46752 -21.92598 -21.27015 -20.22498 -19.23724 -18.69185 -18.45781 -17.40003 -17.22742 -17.16278 -17.06664 -16.58906 -15.92401 -15.56444 -15.23611 -15.05653 -14.99734 -14.84862 -14.57879 -14.37691 -14.23717 -13.88219 -13.70639 -13.44813 -13.38810 -13.13644 -12.94751 -12.87930 -12.69111 -12.51216 -12.33804 -12.16407 -11.81972 -11.77341 -11.60166 -11.31008 -11.03276 -10.86280 -10.68624 -10.09160 -10.05753 -8.82489 -8.38442 -6.46843 -0.05312 0.28727 0.59064 1.26735 1.35906 1.37453 1.47321 2.08907 2.20968 2.28450 2.65663 2.72570 3.00063 3.42960 3.75893 3.85833 3.97942 4.02057 4.16091 4.30822 4.34227 4.38743 4.48369 4.49781 4.57917 4.69084 4.74719 4.78459 4.86392 4.96498 5.00227 5.14373 5.18008 5.20247 5.24399 5.25691 5.30376 5.37666 5.41872 5.49810 5.70107 5.88400 6.10869 6.42099 6.50050 6.58085 6.73569 6.95835 7.21226 8.76541 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.037511 B = 0.002024 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.276883 B =13830.704228 C =14005.022705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.049 3.951 4 O -0.330 6.330 5 C 0.113 3.887 6 C -0.143 4.143 7 C -0.092 4.092 8 C 0.086 3.914 9 N -0.631 5.631 10 C 0.515 3.485 11 O -0.522 6.522 12 C 0.500 3.500 13 O -0.552 6.552 14 N -0.669 5.669 15 C 0.236 3.764 16 H 0.042 0.958 17 C -0.146 4.146 18 C -0.537 4.537 19 H 0.052 0.948 20 C 0.031 3.969 21 N -0.930 5.930 22 Si 0.929 3.071 23 H -0.272 1.272 24 H -0.241 1.241 25 H -0.278 1.278 26 C -0.091 4.091 27 C -0.185 4.185 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.141 0.859 36 H 0.126 0.874 37 H 0.431 0.569 38 H 0.411 0.589 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.271 0.729 43 H 0.158 0.842 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.448 -17.914 11.159 31.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.244 6.244 5 C 0.068 3.932 6 C -0.162 4.162 7 C -0.112 4.112 8 C -0.007 4.007 9 N -0.278 5.278 10 C 0.297 3.703 11 O -0.397 6.397 12 C 0.280 3.720 13 O -0.432 6.432 14 N -0.318 5.318 15 C 0.133 3.867 16 H 0.060 0.940 17 C -0.205 4.205 18 C -0.575 4.575 19 H 0.070 0.930 20 C -0.169 4.169 21 N -0.568 5.568 22 Si 0.752 3.248 23 H -0.197 1.197 24 H -0.165 1.165 25 H -0.204 1.204 26 C -0.111 4.111 27 C -0.204 4.204 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.270 0.730 38 H 0.247 0.753 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.175 0.825 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -23.199 -17.932 11.040 31.330 hybrid contribution 0.247 0.973 -0.232 1.030 sum -22.952 -16.958 10.807 30.515 Atomic orbital electron populations 1.21685 0.92877 1.03134 1.02751 1.21501 0.97099 0.94073 1.03366 1.23163 0.76894 0.99921 1.02543 1.86055 1.23056 1.26724 1.88598 1.19108 0.92140 0.84920 0.97066 1.20401 0.92072 0.98104 1.05651 1.20950 1.00402 0.90932 0.98877 1.17838 0.92389 0.84232 1.06194 1.43000 1.21909 1.12654 1.50277 1.20212 0.82314 0.88006 0.79817 1.90770 1.67171 1.43069 1.38686 1.20074 0.82644 0.87891 0.81408 1.90703 1.68142 1.43083 1.41277 1.46226 1.21198 1.18323 1.46081 1.19064 0.90526 0.82314 0.94801 0.94010 1.22211 0.99560 1.02031 0.96702 1.21147 1.31674 0.93996 1.10667 0.93013 1.25637 0.94411 1.01698 0.95189 1.69992 1.34230 1.24270 1.28316 0.86049 0.78624 0.79027 0.81097 1.19729 1.16462 1.20370 1.20998 0.91354 0.99422 0.99343 1.21321 1.01370 0.90736 1.06950 0.91181 0.91723 0.91921 0.91375 0.91121 0.90640 0.91033 0.84161 0.85593 0.72969 0.75291 0.93619 0.92420 0.92437 0.91928 0.82470 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 71.98 0.71 -0.11 16 2 C -0.12 -1.12 6.30 30.60 0.19 -0.93 16 3 C 0.05 0.55 4.74 71.98 0.34 0.89 16 4 O -0.33 -6.09 10.14 -92.99 -0.94 -7.03 16 5 C 0.11 2.26 6.69 22.52 0.15 2.41 16 6 C -0.14 -3.22 9.98 22.35 0.22 -3.00 16 7 C -0.09 -2.33 8.64 22.39 0.19 -2.13 16 8 C 0.09 2.05 6.25 38.18 0.24 2.29 16 9 N -0.63 -15.95 5.32 -304.75 -1.62 -17.57 16 10 C 0.51 16.55 7.61 87.23 0.66 17.21 16 11 O -0.52 -18.64 14.26 -3.39 -0.05 -18.69 16 12 C 0.50 18.57 7.85 87.23 0.68 19.26 16 13 O -0.55 -21.93 16.15 -3.29 -0.05 -21.98 16 14 N -0.67 -27.26 5.06 -447.56 -2.27 -29.53 16 15 C 0.24 10.89 2.12 44.24 0.09 10.98 16 16 H 0.04 2.02 5.34 -2.39 -0.01 2.01 16 17 C -0.15 -6.05 9.10 71.98 0.65 -5.40 16 18 C -0.54 -29.01 9.06 25.60 0.23 -28.78 16 19 H 0.05 3.04 8.02 -2.91 -0.02 3.02 16 20 C 0.03 1.73 5.47 84.65 0.46 2.19 16 21 N -0.93 -55.23 13.96 21.45 0.30 -54.93 16 22 Si 0.93 42.55 26.19 68.60 1.80 44.35 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.24 -10.35 6.14 99.48 0.61 -9.74 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 C -0.09 -1.62 9.96 22.39 0.22 -1.40 16 27 C -0.18 -3.00 9.03 22.35 0.20 -2.79 16 28 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.64 7.66 -2.38 -0.02 0.62 16 34 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 35 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.13 3.54 6.52 -2.91 -0.02 3.52 16 37 H 0.43 9.15 8.30 -92.71 -0.77 8.38 16 38 H 0.41 16.24 8.03 -92.70 -0.74 15.49 16 39 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 2.39 6.73 -2.39 -0.02 2.37 16 42 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.16 1.60 6.29 -2.91 -0.02 1.58 16 Total: -1.00 -66.79 370.12 1.87 -64.92 By element: Atomic # 1 Polarization: 30.34 SS G_CDS: -0.57 Total: 29.78 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 5.27 Total: 10.70 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.59 Total: -102.04 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -1.04 Total: -47.70 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.80 Total: 44.35 kcal Total: -66.79 1.87 -64.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123214607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.879 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds