Wall clock time and date at job start Tue Mar 31 2020 13:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34742 * 116.99917 * 2 1 4 4 O 1.21505 * 120.00508 * 359.97438 * 3 2 1 5 5 C 1.47464 * 120.00014 * 179.97438 * 3 2 1 6 6 C 1.39806 * 120.07972 * 179.97438 * 5 3 2 7 7 C 1.37652 * 119.91817 * 180.02562 * 6 5 3 8 8 C 1.39140 * 120.07945 * 0.02562 * 7 6 5 9 9 N 1.39411 * 119.92045 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00261 * 146.56106 * 9 8 7 11 11 O 1.21282 * 120.00201 * 354.73206 * 10 9 8 12 12 C 1.50696 * 120.00270 * 174.72305 * 10 9 8 13 13 N 1.46900 * 109.47292 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00167 * 293.95784 * 13 12 10 15 15 C 1.46904 * 111.00115 * 170.00435 * 13 12 10 16 16 H 1.08995 * 109.47327 * 60.00333 * 15 13 12 17 17 C 1.53000 * 109.46794 * 300.00049 * 15 13 12 18 18 C 1.50703 * 109.47089 * 180.02562 * 15 13 12 19 19 H 1.08004 * 120.00190 * 359.97438 * 18 15 13 20 20 C 1.37880 * 119.99697 * 179.97438 * 18 15 13 21 21 N 1.31516 * 119.99699 * 179.97438 * 20 18 15 22 22 Si 1.86797 * 120.00316 * 359.97438 * 20 18 15 23 23 H 1.48492 * 109.46876 * 270.00252 * 22 20 18 24 24 H 1.48500 * 109.47072 * 30.00030 * 22 20 18 25 25 H 1.48496 * 109.47113 * 150.00100 * 22 20 18 26 26 C 1.39143 * 120.16101 * 0.26944 * 8 7 6 27 27 C 1.37654 * 120.07914 * 359.45372 * 26 8 7 28 28 H 1.09004 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47224 * 300.00447 * 1 2 3 30 30 H 1.09002 * 109.46379 * 60.00389 * 1 2 3 31 31 H 1.08002 * 120.04219 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.95715 * 179.97438 * 7 6 5 33 33 H 0.97002 * 120.00477 * 326.56763 * 9 8 7 34 34 H 1.09002 * 109.47219 * 60.00540 * 12 10 9 35 35 H 1.09000 * 109.47488 * 300.00693 * 12 10 9 36 36 H 1.09000 * 109.46897 * 296.04178 * 14 13 12 37 37 H 1.09001 * 109.47229 * 56.04475 * 14 13 12 38 38 H 1.08998 * 109.47451 * 176.04582 * 14 13 12 39 39 H 1.09007 * 109.46875 * 180.02562 * 17 15 13 40 40 H 1.09002 * 109.47079 * 299.99989 * 17 15 13 41 41 H 1.08999 * 109.47478 * 60.00124 * 17 15 13 42 42 H 0.96992 * 119.99898 * 179.97438 * 21 20 18 43 43 H 1.07998 * 119.96594 * 179.70771 * 26 8 7 44 44 H 1.07998 * 120.04210 * 180.25128 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.1728 2.5226 0.0000 7 6 5.5476 2.5908 0.0000 8 6 6.3038 1.4228 0.0000 9 7 7.6960 1.4957 -0.0005 10 6 8.4202 0.5585 0.6426 11 8 7.8617 -0.2933 1.3011 12 6 9.9238 0.5687 0.5434 13 7 10.4738 -0.5459 1.3265 14 6 10.2169 -0.3590 2.7607 15 6 11.9099 -0.7139 1.0664 16 1 12.4380 0.1995 1.3401 17 6 12.1285 -1.0036 -0.4199 18 6 12.4374 -1.8641 1.8849 19 1 11.7726 -2.4150 2.5336 20 6 13.7690 -2.2131 1.8054 21 7 14.2295 -3.2166 2.5200 22 14 14.9188 -1.2608 0.6828 23 1 14.9300 -1.8893 -0.6625 24 1 14.4491 0.1434 0.5692 25 1 16.2914 -1.2794 1.2492 26 6 5.6738 0.1821 -0.0056 27 6 4.2994 0.1062 0.0001 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 3.5865 3.4296 -0.0004 32 1 6.0399 3.5521 -0.0008 33 1 8.1436 2.2210 -0.4637 34 1 10.3074 1.5114 0.9338 35 1 10.2199 0.4602 -0.5000 36 1 10.7419 0.5297 3.1110 37 1 9.1463 -0.2371 2.9252 38 1 10.5719 -1.2309 3.3101 39 1 13.1941 -1.1286 -0.6128 40 1 11.6004 -1.9170 -0.6935 41 1 11.7469 -0.1719 -1.0122 42 1 15.1660 -3.4624 2.4638 43 1 6.2638 -0.7224 -0.0104 44 1 3.8111 -0.8571 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129579371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:00 Heat of formation + Delta-G solvation = -63.087427 kcal Electronic energy + Delta-G solvation = -26129.167495 eV Core-core repulsion = 22240.941615 eV Total energy + Delta-G solvation = -3888.225880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.98089 -40.39966 -38.64196 -36.90200 -36.59868 -34.91778 -32.72725 -31.37029 -30.87121 -30.19482 -28.43160 -27.60342 -25.02170 -24.29090 -23.46186 -23.15419 -21.39037 -20.44241 -19.54938 -18.30443 -17.99367 -17.20271 -17.11491 -16.77691 -16.61130 -15.68548 -15.22190 -14.92575 -14.66575 -14.37042 -14.14027 -13.97968 -13.77015 -13.74422 -13.60989 -13.03103 -12.88755 -12.78739 -12.57500 -12.39010 -12.25018 -11.80419 -11.55774 -11.17856 -11.11074 -11.02196 -10.83972 -10.72213 -10.64370 -10.55156 -10.18350 -9.67902 -9.52877 -9.26733 -9.09152 -8.61546 -8.43439 -7.47985 -6.10851 -4.10217 0.39009 1.12022 2.17290 2.41629 2.67428 2.81838 3.21255 3.29026 3.33632 3.55812 4.33945 4.46506 4.49781 4.65318 4.68349 4.78646 4.80577 4.86180 4.99964 5.14121 5.19735 5.19996 5.27769 5.43684 5.51817 5.70841 5.81845 5.97810 6.03679 6.06348 6.08592 6.19402 6.21934 6.31055 6.34797 6.53736 6.67373 6.69276 6.94084 7.14222 7.18186 7.46847 7.48619 7.81495 7.92276 8.13488 8.58141 8.97041 9.49490 11.01784 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032930 B = 0.002214 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.094107 B =12640.933573 C =13038.466849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.514 3.486 4 O -0.514 6.514 5 C -0.159 4.159 6 C -0.031 4.031 7 C -0.167 4.167 8 C 0.200 3.800 9 N -0.683 5.683 10 C 0.514 3.486 11 O -0.487 6.487 12 C 0.029 3.971 13 N -0.509 5.509 14 C 0.032 3.968 15 C 0.182 3.818 16 H 0.000 1.000 17 C -0.149 4.149 18 C -0.506 4.506 19 H 0.085 0.915 20 C 0.070 3.930 21 N -0.896 5.896 22 Si 0.887 3.113 23 H -0.278 1.278 24 H -0.270 1.270 25 H -0.297 1.297 26 C -0.139 4.139 27 C -0.036 4.036 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.139 0.861 32 H 0.136 0.864 33 H 0.413 0.587 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.009 0.991 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.265 0.735 43 H 0.147 0.853 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.803 12.097 -8.272 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.360 3.640 4 O -0.403 6.403 5 C -0.161 4.161 6 C -0.050 4.050 7 C -0.187 4.187 8 C 0.104 3.896 9 N -0.329 5.329 10 C 0.302 3.698 11 O -0.357 6.357 12 C -0.102 4.102 13 N -0.234 5.234 14 C -0.116 4.116 15 C 0.076 3.924 16 H 0.017 0.983 17 C -0.206 4.206 18 C -0.544 4.544 19 H 0.103 0.897 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.717 3.283 23 H -0.205 1.205 24 H -0.195 1.195 25 H -0.224 1.224 26 C -0.159 4.159 27 C -0.055 4.055 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.249 0.751 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.027 0.973 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.165 0.835 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.390 11.152 -7.861 25.371 hybrid contribution 1.222 1.631 -0.628 2.133 sum -20.168 12.783 -8.489 25.342 Atomic orbital electron populations 1.23283 0.75979 1.03826 1.02580 1.86566 1.23557 1.32692 1.84329 1.21166 0.89160 0.81351 0.72364 1.90826 1.66928 1.36027 1.46568 1.19009 0.88829 0.95057 1.13188 1.20976 0.93707 0.96697 0.93583 1.20831 0.93417 0.97408 1.07083 1.18079 0.83281 0.94035 0.94239 1.43780 1.04192 1.30373 1.54584 1.21269 0.90581 0.80134 0.77811 1.90706 1.72447 1.35327 1.37262 1.22082 0.89492 0.96154 1.02506 1.61730 1.17395 1.37167 1.07070 1.22401 1.00112 1.00833 0.88249 1.19756 0.82651 0.96891 0.93138 0.98257 1.22263 1.00062 1.00462 0.97832 1.20948 0.94576 1.13979 1.24921 0.89679 1.24935 0.97874 0.94827 0.95590 1.69873 1.15149 1.27653 1.40780 0.86879 0.79846 0.80889 0.80666 1.20490 1.19512 1.22425 1.21253 0.94452 0.97760 1.02482 1.21348 0.93187 0.97987 0.92985 0.87911 0.91817 0.91857 0.84297 0.84658 0.75123 0.92531 0.87408 0.97286 0.91820 0.89715 0.93755 0.91760 0.95365 0.92542 0.83495 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.54 9.81 -40.61 -0.40 -3.94 16 3 C 0.51 5.88 7.89 34.49 0.27 6.16 16 4 O -0.51 -6.84 16.13 -19.27 -0.31 -7.15 16 5 C -0.16 -1.72 5.88 -104.96 -0.62 -2.34 16 6 C -0.03 -0.30 9.58 -39.21 -0.38 -0.67 16 7 C -0.17 -1.48 9.94 -39.46 -0.39 -1.88 16 8 C 0.20 2.16 6.27 -83.74 -0.53 1.63 16 9 N -0.68 -6.93 5.32 -9.86 -0.05 -6.98 16 10 C 0.51 7.25 7.25 -10.99 -0.08 7.17 16 11 O -0.49 -8.62 12.02 5.56 0.07 -8.55 16 12 C 0.03 0.44 5.27 -4.98 -0.03 0.41 16 13 N -0.51 -10.24 4.36 -237.73 -1.04 -11.28 16 14 C 0.03 0.64 8.89 60.06 0.53 1.17 16 15 C 0.18 4.14 1.65 -68.86 -0.11 4.02 16 16 H 0.00 0.00 7.20 -51.93 -0.37 -0.37 16 17 C -0.15 -3.05 8.47 37.16 0.31 -2.74 16 18 C -0.51 -13.84 8.51 -34.44 -0.29 -14.13 16 19 H 0.09 2.56 6.64 -52.48 -0.35 2.21 16 20 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 21 N -0.90 -26.89 13.96 55.43 0.77 -26.12 16 22 Si 0.89 21.18 24.37 -169.99 -4.14 17.04 16 23 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 24 H -0.27 -6.11 6.53 56.52 0.37 -5.74 16 25 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 26 C -0.14 -1.66 8.62 -39.46 -0.34 -2.00 16 27 C -0.04 -0.39 9.61 -39.21 -0.38 -0.76 16 28 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.14 1.20 7.64 -52.49 -0.40 0.80 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.41 2.69 8.81 -40.82 -0.36 2.33 16 34 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.11 1.43 5.83 -51.93 -0.30 1.13 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.06 1.21 5.82 -51.93 -0.30 0.91 16 38 H 0.08 1.89 6.24 -51.93 -0.32 1.56 16 39 H 0.04 0.95 3.27 -51.92 -0.17 0.78 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.46 6.20 -51.93 -0.32 0.14 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.15 1.99 6.43 -52.49 -0.34 1.65 16 44 H 0.14 1.31 7.60 -52.49 -0.40 0.91 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -33.82 357.16 -6.55 -40.37 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.78 Total: 2.00 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -1.05 Total: -0.77 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.32 Total: -44.37 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.64 Total: -19.65 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.82 -6.55 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129579371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.720 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds