Wall clock time and date at job start Tue Mar 31 2020 13:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34742 * 116.99917 * 2 1 4 4 O 1.21505 * 120.00508 * 359.97438 * 3 2 1 5 5 C 1.47464 * 120.00014 * 179.97438 * 3 2 1 6 6 C 1.39806 * 120.07972 * 179.97438 * 5 3 2 7 7 C 1.37652 * 119.91817 * 180.02562 * 6 5 3 8 8 C 1.39140 * 120.07945 * 0.02562 * 7 6 5 9 9 N 1.39411 * 119.92045 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00261 * 146.56106 * 9 8 7 11 11 O 1.21282 * 120.00201 * 354.73206 * 10 9 8 12 12 C 1.50696 * 120.00270 * 174.72305 * 10 9 8 13 13 N 1.46900 * 109.47292 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00167 * 293.95784 * 13 12 10 15 15 C 1.46904 * 111.00115 * 170.00435 * 13 12 10 16 16 H 1.08995 * 109.47327 * 60.00333 * 15 13 12 17 17 C 1.53000 * 109.46794 * 300.00049 * 15 13 12 18 18 C 1.50703 * 109.47089 * 180.02562 * 15 13 12 19 19 H 1.08004 * 120.00190 * 359.97438 * 18 15 13 20 20 C 1.37880 * 119.99697 * 179.97438 * 18 15 13 21 21 N 1.31516 * 119.99699 * 179.97438 * 20 18 15 22 22 Si 1.86797 * 120.00316 * 359.97438 * 20 18 15 23 23 H 1.48492 * 109.46876 * 270.00252 * 22 20 18 24 24 H 1.48500 * 109.47072 * 30.00030 * 22 20 18 25 25 H 1.48496 * 109.47113 * 150.00100 * 22 20 18 26 26 C 1.39143 * 120.16101 * 0.26944 * 8 7 6 27 27 C 1.37654 * 120.07914 * 359.45372 * 26 8 7 28 28 H 1.09004 * 109.47231 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47224 * 300.00447 * 1 2 3 30 30 H 1.09002 * 109.46379 * 60.00389 * 1 2 3 31 31 H 1.08002 * 120.04219 * 0.02562 * 6 5 3 32 32 H 1.08001 * 119.95715 * 179.97438 * 7 6 5 33 33 H 0.97002 * 120.00477 * 326.56763 * 9 8 7 34 34 H 1.09002 * 109.47219 * 60.00540 * 12 10 9 35 35 H 1.09000 * 109.47488 * 300.00693 * 12 10 9 36 36 H 1.09000 * 109.46897 * 296.04178 * 14 13 12 37 37 H 1.09001 * 109.47229 * 56.04475 * 14 13 12 38 38 H 1.08998 * 109.47451 * 176.04582 * 14 13 12 39 39 H 1.09007 * 109.46875 * 180.02562 * 17 15 13 40 40 H 1.09002 * 109.47079 * 299.99989 * 17 15 13 41 41 H 1.08999 * 109.47478 * 60.00124 * 17 15 13 42 42 H 0.96992 * 119.99898 * 179.97438 * 21 20 18 43 43 H 1.07998 * 119.96594 * 179.70771 * 26 8 7 44 44 H 1.07998 * 120.04210 * 180.25128 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5364 1.2778 0.0006 6 6 4.1728 2.5226 0.0000 7 6 5.5476 2.5908 0.0000 8 6 6.3038 1.4228 0.0000 9 7 7.6960 1.4957 -0.0005 10 6 8.4202 0.5585 0.6426 11 8 7.8617 -0.2933 1.3011 12 6 9.9238 0.5687 0.5434 13 7 10.4738 -0.5459 1.3265 14 6 10.2169 -0.3590 2.7607 15 6 11.9099 -0.7139 1.0664 16 1 12.4380 0.1995 1.3401 17 6 12.1285 -1.0036 -0.4199 18 6 12.4374 -1.8641 1.8849 19 1 11.7726 -2.4150 2.5336 20 6 13.7690 -2.2131 1.8054 21 7 14.2295 -3.2166 2.5200 22 14 14.9188 -1.2608 0.6828 23 1 14.9300 -1.8893 -0.6625 24 1 14.4491 0.1434 0.5692 25 1 16.2914 -1.2794 1.2492 26 6 5.6738 0.1821 -0.0056 27 6 4.2994 0.1062 0.0001 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 3.5865 3.4296 -0.0004 32 1 6.0399 3.5521 -0.0008 33 1 8.1436 2.2210 -0.4637 34 1 10.3074 1.5114 0.9338 35 1 10.2199 0.4602 -0.5000 36 1 10.7419 0.5297 3.1110 37 1 9.1463 -0.2371 2.9252 38 1 10.5719 -1.2309 3.3101 39 1 13.1941 -1.1286 -0.6128 40 1 11.6004 -1.9170 -0.6935 41 1 11.7469 -0.1719 -1.0122 42 1 15.1660 -3.4624 2.4638 43 1 6.2638 -0.7224 -0.0104 44 1 3.8111 -0.8571 -0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129579371.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:59 Heat of formation + Delta-G solvation = -87.670610 kcal Electronic energy + Delta-G solvation = -26130.233502 eV Core-core repulsion = 22240.941615 eV Total energy + Delta-G solvation = -3889.291887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.87843 -41.34071 -39.64573 -38.31533 -37.49625 -35.90725 -34.69469 -32.20958 -32.15578 -31.55499 -29.58396 -28.41549 -26.78284 -25.69128 -24.61103 -23.97685 -22.37271 -21.54978 -21.04043 -19.10863 -19.04069 -18.72243 -18.20726 -17.96085 -17.39439 -16.98296 -16.63935 -16.00626 -15.75390 -15.57377 -15.47296 -15.27446 -14.78454 -14.71124 -14.51163 -14.46907 -14.18517 -13.86091 -13.76024 -13.63642 -13.37273 -13.00272 -12.75257 -12.68015 -12.49968 -12.43147 -12.20657 -11.99832 -11.83229 -11.72415 -11.50209 -11.40548 -11.06453 -10.76807 -10.69335 -10.06803 -9.30370 -9.00698 -8.25137 -6.29689 -0.45540 0.33991 1.25294 1.33823 1.38654 1.49444 1.68259 1.69467 1.88624 2.34728 2.74581 3.07749 3.24393 3.65814 3.69117 3.86703 3.92763 4.22862 4.23019 4.29244 4.33192 4.34811 4.38955 4.47889 4.50129 4.57439 4.66221 4.69495 4.79919 4.88706 4.94842 5.03219 5.04031 5.19839 5.22455 5.25142 5.28980 5.39975 5.44614 5.67198 5.83796 5.97888 6.25603 6.39198 6.63720 6.69251 6.77807 7.12967 7.34674 8.91522 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032930 B = 0.002214 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.094107 B =12640.933573 C =13038.466849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.514 3.486 4 O -0.537 6.537 5 C -0.168 4.168 6 C -0.032 4.032 7 C -0.149 4.149 8 C 0.189 3.811 9 N -0.661 5.661 10 C 0.519 3.481 11 O -0.532 6.532 12 C 0.029 3.971 13 N -0.531 5.531 14 C 0.043 3.957 15 C 0.186 3.814 16 H 0.004 0.996 17 C -0.146 4.146 18 C -0.510 4.510 19 H 0.035 0.965 20 C 0.006 3.994 21 N -0.951 5.951 22 Si 0.955 3.045 23 H -0.264 1.264 24 H -0.240 1.240 25 H -0.303 1.303 26 C -0.155 4.155 27 C -0.037 4.037 28 H 0.131 0.869 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.152 0.848 32 H 0.171 0.829 33 H 0.433 0.567 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.265 0.735 43 H 0.126 0.874 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.179 15.406 -10.668 28.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.361 3.639 4 O -0.429 6.429 5 C -0.170 4.170 6 C -0.050 4.050 7 C -0.169 4.169 8 C 0.092 3.908 9 N -0.308 5.308 10 C 0.307 3.693 11 O -0.406 6.406 12 C -0.102 4.102 13 N -0.256 5.256 14 C -0.105 4.105 15 C 0.078 3.922 16 H 0.021 0.979 17 C -0.203 4.203 18 C -0.549 4.549 19 H 0.053 0.947 20 C -0.191 4.191 21 N -0.592 5.592 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.164 1.164 25 H -0.231 1.231 26 C -0.176 4.176 27 C -0.056 4.056 28 H 0.149 0.851 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.169 0.831 32 H 0.188 0.812 33 H 0.274 0.726 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.144 0.856 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.804 14.507 -10.298 28.141 hybrid contribution 1.144 0.559 0.175 1.285 sum -20.660 15.066 -10.123 27.501 Atomic orbital electron populations 1.23587 0.74241 1.05833 1.02733 1.86560 1.25343 1.32003 1.83856 1.21300 0.89419 0.81410 0.71764 1.90807 1.67437 1.36733 1.47919 1.19157 0.88696 0.95647 1.13534 1.21219 0.94269 0.96658 0.92896 1.21100 0.92885 0.98053 1.04899 1.18193 0.83468 0.94253 0.94843 1.43423 1.03894 1.29882 1.53615 1.21122 0.90456 0.80132 0.77572 1.90710 1.73035 1.37344 1.39532 1.22193 0.89757 0.95422 1.02845 1.61525 1.15999 1.40774 1.07318 1.22199 1.00439 0.99329 0.88505 1.19583 0.84106 0.94647 0.93827 0.97860 1.22164 0.99696 1.01968 0.96457 1.21241 0.94169 1.14880 1.24562 0.94687 1.25896 0.99891 0.95906 0.97419 1.70058 1.15625 1.30184 1.43328 0.85770 0.76686 0.80814 0.78579 1.19016 1.16358 1.23088 1.21174 0.94796 0.97786 1.03832 1.21365 0.92853 0.98480 0.92915 0.85056 0.91827 0.91574 0.83055 0.81171 0.72642 0.89544 0.85057 0.96211 0.91037 0.93731 0.94446 0.93006 0.90411 0.92612 0.85640 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.36 -6.95 9.81 -56.53 -0.55 -7.50 16 3 C 0.51 11.39 7.89 70.25 0.55 11.94 16 4 O -0.54 -13.87 16.13 19.82 0.32 -13.55 16 5 C -0.17 -3.46 5.88 -20.09 -0.12 -3.58 16 6 C -0.03 -0.54 9.58 22.51 0.22 -0.32 16 7 C -0.15 -2.14 9.94 22.35 0.22 -1.92 16 8 C 0.19 3.62 6.27 38.37 0.24 3.86 16 9 N -0.66 -11.21 5.32 -303.50 -1.61 -12.82 16 10 C 0.52 13.44 7.25 87.66 0.64 14.08 16 11 O -0.53 -18.67 12.02 -3.04 -0.04 -18.70 16 12 C 0.03 0.75 5.27 85.56 0.45 1.20 16 13 N -0.53 -20.83 4.36 -906.04 -3.95 -24.78 16 14 C 0.04 1.75 8.89 127.69 1.13 2.89 16 15 C 0.19 8.14 1.65 44.17 0.07 8.22 16 16 H 0.00 0.17 7.20 -2.39 -0.02 0.15 16 17 C -0.15 -5.50 8.47 71.98 0.61 -4.89 16 18 C -0.51 -28.73 8.51 25.60 0.22 -28.51 16 19 H 0.03 2.26 6.64 -2.91 -0.02 2.24 16 20 C 0.01 0.32 5.45 84.66 0.46 0.78 16 21 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 22 Si 0.96 42.99 24.37 68.60 1.67 44.66 16 23 H -0.26 -11.24 6.87 99.48 0.68 -10.56 16 24 H -0.24 -9.58 6.53 99.48 0.65 -8.93 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 C -0.16 -3.62 8.62 22.35 0.19 -3.42 16 27 C -0.04 -0.78 9.61 22.51 0.22 -0.57 16 28 H 0.13 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.15 2.21 7.64 -2.91 -0.02 2.19 16 32 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.43 3.60 8.81 -92.71 -0.82 2.78 16 34 H 0.09 1.83 8.12 -2.39 -0.02 1.81 16 35 H 0.13 2.80 5.83 -2.39 -0.01 2.79 16 36 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 2.76 5.82 -2.39 -0.01 2.74 16 38 H 0.04 2.11 6.24 -2.39 -0.01 2.10 16 39 H 0.04 1.46 3.27 -2.38 -0.01 1.46 16 40 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 2.15 6.20 -2.39 -0.01 2.14 16 42 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.13 3.49 6.43 -2.91 -0.02 3.47 16 44 H 0.15 2.75 7.60 -2.91 -0.02 2.73 16 Total: -1.00 -78.07 357.16 2.59 -75.48 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.15 Total: 15.03 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 6.30 Total: 1.32 kcal Atomic # 7 Polarization: -91.46 SS G_CDS: -5.27 Total: -96.73 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -0.27 Total: -39.76 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.67 Total: 44.66 kcal Total: -78.07 2.59 -75.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129579371.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.187 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds