Wall clock time and date at job start Tue Mar 31 2020 13:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47185 * 2 1 4 4 C 1.50691 * 109.47472 * 239.99493 * 2 1 3 5 5 H 1.08004 * 120.00306 * 239.99803 * 4 2 1 6 6 C 1.37880 * 120.00206 * 60.00161 * 4 2 1 7 7 N 1.31518 * 119.99740 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00160 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47184 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99853 * 8 6 4 11 11 H 1.48500 * 109.46982 * 239.99985 * 8 6 4 12 12 N 1.46907 * 109.46747 * 119.99398 * 2 1 3 13 13 C 1.46895 * 111.00131 * 58.95990 * 12 2 1 14 14 C 1.46896 * 110.99926 * 295.00232 * 12 2 1 15 15 C 1.50704 * 109.46855 * 190.00120 * 14 12 2 16 16 O 1.21276 * 120.00373 * 0.02562 * 15 14 12 17 17 N 1.34776 * 120.00015 * 179.97438 * 15 14 12 18 18 C 1.46502 * 120.00255 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47090 * 180.02562 * 18 17 15 20 20 C 1.38247 * 119.92634 * 270.01579 * 19 18 17 21 21 C 1.38240 * 120.14459 * 179.75199 * 20 19 18 22 22 C 1.38552 * 120.02633 * 0.42901 * 21 20 19 23 23 C 1.39265 * 119.82706 * 359.57585 * 22 21 20 24 24 C 1.38231 * 119.92969 * 89.99991 * 19 18 17 25 25 O 1.36496 * 108.64230 * 180.24572 * 23 22 21 26 26 C 1.43981 * 105.48444 * 342.72036 * 25 23 22 27 27 O 1.36505 * 131.53353 * 179.87931 * 22 21 20 28 28 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47777 * 300.00708 * 1 2 3 30 30 H 1.09001 * 109.46915 * 60.00724 * 1 2 3 31 31 H 0.96995 * 119.99966 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46669 * 296.04279 * 13 12 2 33 33 H 1.08999 * 109.47455 * 56.03893 * 13 12 2 34 34 H 1.08996 * 109.47188 * 176.04896 * 13 12 2 35 35 H 1.08998 * 109.47653 * 70.00559 * 14 12 2 36 36 H 1.08998 * 109.47528 * 309.99670 * 14 12 2 37 37 H 0.97009 * 120.00048 * 359.97438 * 17 15 14 38 38 H 1.08993 * 109.47016 * 59.99936 * 18 17 15 39 39 H 1.08998 * 109.46335 * 299.99940 * 18 17 15 40 40 H 1.07994 * 119.93290 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99327 * 180.33354 * 21 20 19 42 42 H 1.08003 * 119.98943 * 0.02562 * 24 19 18 43 43 H 1.09007 * 110.56955 * 268.54960 * 26 25 23 44 44 H 1.09003 * 110.57719 * 145.67764 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1311 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3227 -1.1198 -4.0078 9 1 3.1476 -2.2866 -3.6035 10 1 1.1681 -1.5870 -4.8164 11 1 3.1475 -0.1861 -4.8159 12 7 2.0195 -0.6924 1.1996 13 6 1.5283 -2.0760 1.2462 14 6 1.6485 0.0393 2.4181 15 6 2.3677 -0.5569 3.6007 16 8 3.1160 -1.4983 3.4438 17 7 2.1800 -0.0432 4.8325 18 6 2.8795 -0.6224 5.9821 19 6 2.4988 0.1282 7.2321 20 6 3.2378 1.2272 7.6287 21 6 2.8894 1.9222 8.7718 22 6 1.8031 1.5129 9.5281 23 6 1.0587 0.4057 9.1286 24 6 1.4112 -0.2834 7.9795 25 8 0.0496 0.2112 10.0269 26 6 0.4276 0.9591 11.1977 27 8 1.2603 2.0120 10.6769 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 0.7088 1.1610 -3.4845 32 1 0.4418 -2.0730 1.3349 33 1 1.8167 -2.5950 0.3321 34 1 1.9616 -2.5866 2.1062 35 1 0.5720 -0.0343 2.5726 36 1 1.9295 1.0872 2.3125 37 1 1.5823 0.7105 4.9579 38 1 3.9559 -0.5487 5.8272 39 1 2.5985 -1.6702 6.0880 40 1 4.0864 1.5463 7.0419 41 1 3.4652 2.7836 9.0765 42 1 0.8358 -1.1424 7.6674 43 1 0.9911 0.3311 11.8879 44 1 -0.4529 1.3743 11.6879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129585939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:19 Heat of formation + Delta-G solvation = -52.746624 kcal Electronic energy + Delta-G solvation = -26089.368536 eV Core-core repulsion = 22201.591066 eV Total energy + Delta-G solvation = -3887.777469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57223 -39.67770 -38.49932 -36.70594 -36.63855 -34.56689 -32.65405 -31.35375 -30.74236 -29.11577 -27.74350 -26.56442 -25.50519 -25.12279 -23.71678 -23.38340 -22.15971 -20.42775 -19.22459 -18.35097 -18.04331 -17.78479 -16.99537 -16.43745 -16.04495 -15.75988 -15.37621 -14.88007 -14.79321 -14.69694 -14.27384 -14.05093 -13.95217 -13.61039 -13.38761 -13.36663 -13.20247 -12.68989 -12.54115 -12.34094 -12.24613 -11.54544 -11.49891 -11.29490 -11.03535 -10.87300 -10.76875 -10.71714 -10.42292 -10.03683 -9.95142 -9.41529 -9.20756 -8.97308 -8.82555 -8.46035 -8.36811 -7.10278 -5.99187 -4.01750 0.62542 0.79673 2.31586 2.96876 3.00914 3.01729 3.33010 3.40719 3.46494 3.56198 4.04616 4.21378 4.30418 4.45333 4.49349 4.61104 4.74609 4.80959 5.05532 5.12899 5.20653 5.31923 5.33668 5.56868 5.63192 5.67260 5.78503 5.83239 5.89794 5.95400 6.11776 6.37100 6.47583 6.51688 6.68977 6.71398 6.83510 7.04053 7.11025 7.43936 7.64763 7.73119 7.87379 8.12391 8.39625 8.53718 8.63876 9.05013 9.63057 11.08276 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032499 B = 0.002061 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.365368 B =13584.605744 C =13720.358575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.496 4.496 5 H 0.065 0.935 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.517 5.517 13 C 0.030 3.970 14 C 0.037 3.963 15 C 0.515 3.485 16 O -0.518 6.518 17 N -0.739 5.739 18 C 0.167 3.833 19 C -0.094 4.094 20 C -0.088 4.088 21 C -0.101 4.101 22 C 0.035 3.965 23 C 0.029 3.971 24 C -0.081 4.081 25 O -0.308 6.308 26 C 0.213 3.787 27 O -0.310 6.310 28 H 0.031 0.969 29 H 0.006 0.994 30 H 0.089 0.911 31 H 0.259 0.741 32 H 0.009 0.991 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.095 0.905 37 H 0.400 0.600 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.084 0.916 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 2.254 27.524 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.104 3.896 3 H 0.058 0.942 4 C -0.534 4.534 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.241 5.241 13 C -0.118 4.118 14 C -0.095 4.095 15 C 0.302 3.698 16 O -0.392 6.392 17 N -0.394 5.394 18 C 0.043 3.957 19 C -0.094 4.094 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.009 4.009 23 C -0.016 4.016 24 C -0.100 4.100 25 O -0.225 6.225 26 C 0.101 3.899 27 O -0.226 6.226 28 H 0.050 0.950 29 H 0.025 0.975 30 H 0.108 0.892 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.233 0.767 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.102 0.898 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.489 1.715 27.317 27.375 hybrid contribution -1.179 0.119 -0.368 1.241 sum -0.690 1.833 26.949 27.020 Atomic orbital electron populations 1.22427 1.00837 0.99497 1.00513 1.19380 0.89733 0.94589 0.85908 0.94239 1.21158 1.30314 1.12468 0.89484 0.91692 1.24932 0.95286 0.95184 0.99030 1.69891 1.37254 1.23164 1.23266 0.86444 0.78505 0.79710 0.82793 1.19675 1.21235 1.21091 1.62097 1.59524 1.02083 1.00401 1.22368 0.95958 0.90780 1.02672 1.21928 0.97372 0.99590 0.90609 1.21088 0.81928 0.83290 0.83485 1.90651 1.36432 1.27403 1.84690 1.46154 1.49391 1.37180 1.06681 1.20041 0.97769 0.96525 0.81323 1.19660 0.95687 0.97094 0.96986 1.20944 1.00118 0.94335 0.95268 1.20102 0.94623 1.02046 0.95193 1.19889 0.96690 0.94255 0.90111 1.19754 0.89457 0.97134 0.95227 1.20011 0.97333 1.00150 0.92540 1.87386 1.40485 1.69712 1.24871 1.25646 0.94191 0.82436 0.87595 1.87374 1.60531 1.38166 1.36511 0.94972 0.97487 0.89221 0.93109 0.97232 0.90774 0.92060 0.92788 0.88660 0.76662 0.90200 0.90597 0.83927 0.84421 0.84390 0.89801 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.28 37.15 0.31 -3.81 16 2 C 0.21 5.26 2.34 -68.87 -0.16 5.10 16 3 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 4 C -0.50 -13.70 7.88 -34.44 -0.27 -13.97 16 5 H 0.06 1.83 6.77 -52.48 -0.36 1.48 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.52 -11.49 4.48 -237.74 -1.06 -12.56 16 13 C 0.03 0.65 8.44 60.06 0.51 1.16 16 14 C 0.04 0.65 4.89 -4.98 -0.02 0.62 16 15 C 0.52 8.31 7.55 -10.98 -0.08 8.22 16 16 O -0.52 -10.28 14.31 5.56 0.08 -10.20 16 17 N -0.74 -8.49 5.55 -61.47 -0.34 -8.83 16 18 C 0.17 1.65 5.79 -5.19 -0.03 1.62 16 19 C -0.09 -0.79 5.25 -104.62 -0.55 -1.34 16 20 C -0.09 -0.66 9.69 -39.58 -0.38 -1.04 16 21 C -0.10 -0.79 10.06 -39.46 -0.40 -1.19 16 22 C 0.04 0.33 7.15 -39.08 -0.28 0.05 16 23 C 0.03 0.28 7.15 -39.08 -0.28 0.00 16 24 C -0.08 -0.73 9.71 -39.47 -0.38 -1.11 16 25 O -0.31 -2.93 11.40 -45.68 -0.52 -3.45 16 26 C 0.21 1.35 8.89 101.05 0.90 2.24 16 27 O -0.31 -2.81 11.40 -45.70 -0.52 -3.33 16 28 H 0.03 0.75 6.47 -51.93 -0.34 0.41 16 29 H 0.01 0.13 6.75 -51.93 -0.35 -0.22 16 30 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 32 H 0.01 0.19 6.51 -51.93 -0.34 -0.15 16 33 H 0.07 1.69 6.41 -51.93 -0.33 1.35 16 34 H 0.06 1.27 5.88 -51.93 -0.31 0.96 16 35 H 0.05 0.89 6.94 -51.93 -0.36 0.53 16 36 H 0.10 1.56 8.00 -51.93 -0.42 1.14 16 37 H 0.40 3.74 8.46 -40.82 -0.35 3.39 16 38 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.13 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -33.04 358.94 -8.54 -41.57 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.96 Total: 1.56 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -1.22 Total: -1.97 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.78 Total: -46.14 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.96 Total: -16.98 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.04 -8.54 -41.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129585939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.172 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds