Wall clock time and date at job start Tue Mar 31 2020 13:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47185 * 2 1 4 4 C 1.50691 * 109.47472 * 239.99493 * 2 1 3 5 5 H 1.08004 * 120.00306 * 239.99803 * 4 2 1 6 6 C 1.37880 * 120.00206 * 60.00161 * 4 2 1 7 7 N 1.31518 * 119.99740 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00160 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47184 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99853 * 8 6 4 11 11 H 1.48500 * 109.46982 * 239.99985 * 8 6 4 12 12 N 1.46907 * 109.46747 * 119.99398 * 2 1 3 13 13 C 1.46895 * 111.00131 * 58.95990 * 12 2 1 14 14 C 1.46896 * 110.99926 * 295.00232 * 12 2 1 15 15 C 1.50704 * 109.46855 * 190.00120 * 14 12 2 16 16 O 1.21276 * 120.00373 * 0.02562 * 15 14 12 17 17 N 1.34776 * 120.00015 * 179.97438 * 15 14 12 18 18 C 1.46502 * 120.00255 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47090 * 180.02562 * 18 17 15 20 20 C 1.38247 * 119.92634 * 270.01579 * 19 18 17 21 21 C 1.38240 * 120.14459 * 179.75199 * 20 19 18 22 22 C 1.38552 * 120.02633 * 0.42901 * 21 20 19 23 23 C 1.39265 * 119.82706 * 359.57585 * 22 21 20 24 24 C 1.38231 * 119.92969 * 89.99991 * 19 18 17 25 25 O 1.36496 * 108.64230 * 180.24572 * 23 22 21 26 26 C 1.43981 * 105.48444 * 342.72036 * 25 23 22 27 27 O 1.36505 * 131.53353 * 179.87931 * 22 21 20 28 28 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47777 * 300.00708 * 1 2 3 30 30 H 1.09001 * 109.46915 * 60.00724 * 1 2 3 31 31 H 0.96995 * 119.99966 * 179.97438 * 7 6 4 32 32 H 1.09006 * 109.46669 * 296.04279 * 13 12 2 33 33 H 1.08999 * 109.47455 * 56.03893 * 13 12 2 34 34 H 1.08996 * 109.47188 * 176.04896 * 13 12 2 35 35 H 1.08998 * 109.47653 * 70.00559 * 14 12 2 36 36 H 1.08998 * 109.47528 * 309.99670 * 14 12 2 37 37 H 0.97009 * 120.00048 * 359.97438 * 17 15 14 38 38 H 1.08993 * 109.47016 * 59.99936 * 18 17 15 39 39 H 1.08998 * 109.46335 * 299.99940 * 18 17 15 40 40 H 1.07994 * 119.93290 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.99327 * 180.33354 * 21 20 19 42 42 H 1.08003 * 119.98943 * 0.02562 * 24 19 18 43 43 H 1.09007 * 110.56955 * 268.54960 * 26 25 23 44 44 H 1.09003 * 110.57719 * 145.67764 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1311 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3227 -1.1198 -4.0078 9 1 3.1476 -2.2866 -3.6035 10 1 1.1681 -1.5870 -4.8164 11 1 3.1475 -0.1861 -4.8159 12 7 2.0195 -0.6924 1.1996 13 6 1.5283 -2.0760 1.2462 14 6 1.6485 0.0393 2.4181 15 6 2.3677 -0.5569 3.6007 16 8 3.1160 -1.4983 3.4438 17 7 2.1800 -0.0432 4.8325 18 6 2.8795 -0.6224 5.9821 19 6 2.4988 0.1282 7.2321 20 6 3.2378 1.2272 7.6287 21 6 2.8894 1.9222 8.7718 22 6 1.8031 1.5129 9.5281 23 6 1.0587 0.4057 9.1286 24 6 1.4112 -0.2834 7.9795 25 8 0.0496 0.2112 10.0269 26 6 0.4276 0.9591 11.1977 27 8 1.2603 2.0120 10.6769 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 0.7088 1.1610 -3.4845 32 1 0.4418 -2.0730 1.3349 33 1 1.8167 -2.5950 0.3321 34 1 1.9616 -2.5866 2.1062 35 1 0.5720 -0.0343 2.5726 36 1 1.9295 1.0872 2.3125 37 1 1.5823 0.7105 4.9579 38 1 3.9559 -0.5487 5.8272 39 1 2.5985 -1.6702 6.0880 40 1 4.0864 1.5463 7.0419 41 1 3.4652 2.7836 9.0765 42 1 0.8358 -1.1424 7.6674 43 1 0.9911 0.3311 11.8879 44 1 -0.4529 1.3743 11.6879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129585939.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:18 Heat of formation + Delta-G solvation = -76.274676 kcal Electronic energy + Delta-G solvation = -26090.388789 eV Core-core repulsion = 22201.591066 eV Total energy + Delta-G solvation = -3888.797722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.17288 -40.89551 -39.33393 -38.28476 -37.32450 -35.63096 -34.65595 -32.19323 -31.43510 -30.82886 -29.15676 -27.45881 -27.13075 -26.33291 -25.26445 -24.01183 -22.91097 -21.80212 -20.89475 -18.98100 -18.79433 -18.38534 -18.30258 -17.85924 -17.29422 -16.78513 -16.69305 -16.46457 -15.84381 -15.53085 -15.46980 -15.23897 -14.89079 -14.84928 -14.51362 -14.27354 -14.13339 -14.02083 -13.78656 -13.58392 -13.31725 -13.05162 -12.90248 -12.67387 -12.61896 -12.52918 -12.16706 -12.12864 -11.99725 -11.89395 -11.83580 -10.95567 -10.64839 -10.47119 -10.04602 -9.91134 -9.12244 -8.81025 -8.09421 -6.18547 -0.04168 0.16800 1.42305 1.44653 1.56634 1.73494 1.75058 2.11701 2.45450 2.48105 2.67804 3.19990 3.42292 3.51985 3.61410 3.78333 3.97289 4.01768 4.06136 4.17139 4.27197 4.40288 4.45496 4.49658 4.63125 4.65013 4.75042 4.76180 4.86729 4.93998 4.97134 5.03458 5.15963 5.17054 5.25315 5.35476 5.45902 5.50117 5.55784 5.73506 5.82609 6.07285 6.19353 6.49042 6.53821 6.79069 6.94068 7.37073 7.50109 8.96817 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.032499 B = 0.002061 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.365368 B =13584.605744 C =13720.358575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.215 3.785 3 H 0.015 0.985 4 C -0.514 4.514 5 H 0.051 0.949 6 C 0.012 3.988 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.536 5.536 13 C 0.042 3.958 14 C 0.034 3.966 15 C 0.521 3.479 16 O -0.560 6.560 17 N -0.717 5.717 18 C 0.170 3.830 19 C -0.093 4.093 20 C -0.081 4.081 21 C -0.102 4.102 22 C 0.023 3.977 23 C 0.011 3.989 24 C -0.086 4.086 25 O -0.327 6.327 26 C 0.205 3.795 27 O -0.324 6.324 28 H 0.029 0.971 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.261 0.739 32 H 0.017 0.983 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.413 0.587 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.162 0.838 41 H 0.157 0.843 42 H 0.141 0.859 43 H 0.104 0.896 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.310 2.704 28.858 28.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.108 3.892 3 H 0.033 0.967 4 C -0.553 4.553 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.260 5.260 13 C -0.106 4.106 14 C -0.097 4.097 15 C 0.308 3.692 16 O -0.437 6.437 17 N -0.371 5.371 18 C 0.047 3.953 19 C -0.093 4.093 20 C -0.099 4.099 21 C -0.120 4.120 22 C -0.021 4.021 23 C -0.033 4.033 24 C -0.105 4.105 25 O -0.244 6.244 26 C 0.094 3.906 27 O -0.241 6.241 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.249 0.751 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.159 0.841 43 H 0.122 0.878 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 0.489 2.193 28.704 28.792 hybrid contribution -1.196 0.026 -0.637 1.355 sum -0.707 2.220 28.067 28.163 Atomic orbital electron populations 1.22216 0.99853 0.99256 1.00566 1.19135 0.90332 0.93130 0.86577 0.96682 1.21390 1.30446 1.12351 0.91079 0.93076 1.25632 0.95490 0.95885 1.01609 1.69994 1.37824 1.24020 1.23925 0.85521 0.78073 0.78606 0.79497 1.19731 1.20556 1.20605 1.61919 1.60234 1.02551 1.01271 1.22224 0.96330 0.90337 1.01735 1.22003 0.98587 0.99730 0.89388 1.20740 0.81335 0.82779 0.84333 1.90641 1.38354 1.29302 1.85428 1.45929 1.48724 1.36761 1.05724 1.20068 0.97623 0.96514 0.81053 1.19467 0.95984 0.97488 0.96398 1.21161 1.00136 0.93517 0.95080 1.20375 0.94286 1.02488 0.94881 1.20179 0.97141 0.94341 0.90456 1.19933 0.89967 0.97721 0.95721 1.20098 0.97560 1.00295 0.92541 1.87347 1.40876 1.70390 1.25802 1.26111 0.95405 0.82254 0.86831 1.87342 1.60931 1.39281 1.36512 0.95208 0.94647 0.91831 0.92946 0.96433 0.93023 0.91377 0.91140 0.87536 0.75090 0.90006 0.90902 0.82058 0.82537 0.84118 0.87828 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.49 8.28 71.98 0.60 -6.90 16 2 C 0.22 10.84 2.34 44.16 0.10 10.94 16 3 H 0.02 0.84 8.03 -2.39 -0.02 0.82 16 4 C -0.51 -28.78 7.88 25.60 0.20 -28.58 16 5 H 0.05 2.94 6.77 -2.91 -0.02 2.92 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -52.23 11.32 21.45 0.24 -51.99 16 8 Si 0.96 44.43 29.54 68.60 2.03 46.45 16 9 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.54 -23.66 4.48 -906.07 -4.06 -27.72 16 13 C 0.04 1.78 8.44 127.69 1.08 2.86 16 14 C 0.03 1.15 4.89 85.56 0.42 1.57 16 15 C 0.52 16.06 7.55 87.66 0.66 16.73 16 16 O -0.56 -21.81 14.31 -3.02 -0.04 -21.85 16 17 N -0.72 -15.02 5.55 -466.79 -2.59 -17.61 16 18 C 0.17 3.08 5.79 85.63 0.50 3.57 16 19 C -0.09 -1.39 5.25 -19.86 -0.10 -1.49 16 20 C -0.08 -1.02 9.69 22.27 0.22 -0.80 16 21 C -0.10 -1.38 10.06 22.35 0.22 -1.16 16 22 C 0.02 0.41 7.15 22.59 0.16 0.57 16 23 C 0.01 0.20 7.15 22.59 0.16 0.36 16 24 C -0.09 -1.43 9.71 22.34 0.22 -1.21 16 25 O -0.33 -5.93 11.40 -76.01 -0.87 -6.80 16 26 C 0.20 2.28 8.89 113.37 1.01 3.29 16 27 O -0.32 -5.45 11.40 -76.10 -0.87 -6.32 16 28 H 0.03 1.37 6.47 -2.39 -0.02 1.35 16 29 H 0.03 1.41 6.75 -2.39 -0.02 1.39 16 30 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 31 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.02 0.70 6.51 -2.38 -0.02 0.68 16 33 H 0.05 2.38 6.41 -2.39 -0.02 2.37 16 34 H 0.07 2.79 5.88 -2.39 -0.01 2.78 16 35 H 0.07 2.15 6.94 -2.39 -0.02 2.13 16 36 H 0.11 3.31 8.00 -2.39 -0.02 3.29 16 37 H 0.41 6.66 8.46 -92.70 -0.78 5.88 16 38 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 39 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 40 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 41 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -71.16 358.94 -0.02 -71.17 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.25 Total: 13.78 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.89 Total: 0.88 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -6.41 Total: -97.31 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -1.78 Total: -34.97 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -71.16 -0.02 -71.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129585939.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.103 kcal (2) G-P(sol) polarization free energy of solvation -71.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds