Wall clock time and date at job start Tue Mar 31 2020 13:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99920 * 2 1 4 4 O 1.20826 * 120.00051 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99791 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.46837 * 179.97438 * 5 3 2 7 7 H 1.08991 * 109.46931 * 55.00130 * 6 5 3 8 8 C 1.53000 * 109.47087 * 294.99738 * 6 5 3 9 9 C 1.50704 * 109.47026 * 175.00380 * 6 5 3 10 10 O 1.21280 * 119.99958 * 34.24755 * 9 6 5 11 11 N 1.34775 * 119.99755 * 214.25332 * 9 6 5 12 12 C 1.46497 * 120.00102 * 5.06989 * 11 9 6 13 13 C 1.50697 * 109.46835 * 268.73781 * 12 11 9 14 14 H 1.08007 * 120.00159 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00236 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99928 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00023 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47150 * 90.00075 * 17 15 13 19 19 H 1.48499 * 109.47369 * 209.99744 * 17 15 13 20 20 H 1.48497 * 109.47130 * 330.00028 * 17 15 13 21 21 C 1.46498 * 119.99937 * 185.06205 * 11 9 6 22 22 C 1.50701 * 109.47390 * 270.00404 * 21 11 9 23 23 C 1.38229 * 119.62011 * 94.98028 * 22 21 11 24 24 C 1.38628 * 119.16054 * 179.79012 * 23 22 21 25 25 C 1.38671 * 118.41886 * 0.47421 * 24 23 22 26 26 C 1.38184 * 119.16624 * 359.49976 * 25 24 23 27 27 N 1.31855 * 119.61814 * 274.99478 * 22 21 11 28 28 H 1.08997 * 109.47475 * 59.99479 * 1 2 3 29 29 H 1.09000 * 109.46781 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47037 * 300.00172 * 1 2 3 31 31 H 1.09004 * 109.47396 * 60.00326 * 5 3 2 32 32 H 1.08993 * 109.47319 * 300.00024 * 5 3 2 33 33 H 1.09004 * 109.46898 * 66.52713 * 8 6 5 34 34 H 1.08999 * 109.47041 * 186.52006 * 8 6 5 35 35 H 1.08997 * 109.47733 * 306.52561 * 8 6 5 36 36 H 1.08997 * 109.47435 * 28.73569 * 12 11 9 37 37 H 1.08994 * 109.47181 * 148.74223 * 12 11 9 38 38 H 0.97004 * 119.99780 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.47277 * 149.99814 * 21 11 9 40 40 H 1.09007 * 109.47008 * 30.00516 * 21 11 9 41 41 H 1.07997 * 120.41681 * 359.97438 * 23 22 21 42 42 H 1.07996 * 120.78843 * 180.22321 * 24 23 22 43 43 H 1.08001 * 120.41667 * 179.78557 * 25 24 23 44 44 H 1.07996 * 119.62074 * 180.25426 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 -0.0011 7 1 3.5382 3.2578 0.8407 8 6 3.5596 3.4037 -1.3085 9 6 5.4999 2.8226 0.1221 10 8 6.1970 1.9735 -0.3918 11 7 6.0666 3.8380 0.8034 12 6 5.2246 4.8010 1.5174 13 6 4.9042 5.9592 0.6081 14 1 5.2890 5.9761 -0.4010 15 6 4.1191 6.9969 1.0639 16 7 3.8399 8.0079 0.2704 17 14 3.4518 6.9668 2.8083 18 1 4.4199 7.6277 3.7201 19 1 2.1553 7.6895 2.8550 20 1 3.2498 5.5594 3.2368 21 6 7.5245 3.9787 0.8301 22 6 8.0817 3.2141 2.0031 23 6 8.5374 1.9217 1.8219 24 6 9.0520 1.2286 2.9066 25 6 9.0800 1.8606 4.1406 26 6 8.6071 3.1548 4.2453 27 7 8.1285 3.7854 3.1905 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7810 -0.8909 32 1 3.9564 0.7806 0.8891 33 1 2.4711 3.4493 -1.3438 34 1 3.9674 4.4132 -1.3602 35 1 3.9264 2.8200 -2.1527 36 1 4.2992 4.3153 1.8268 37 1 5.7552 5.1656 2.3969 38 1 3.2878 8.7382 0.5912 39 1 7.7862 5.0325 0.9259 40 1 7.9448 3.5827 -0.0945 41 1 8.4957 1.4589 0.8470 42 1 9.4186 0.2190 2.7941 43 1 9.4708 1.3494 5.0080 44 1 8.6292 3.6555 5.2019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130718838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:18 Heat of formation + Delta-G solvation = -82.981805 kcal Electronic energy + Delta-G solvation = -27632.897160 eV Core-core repulsion = 23743.808595 eV Total energy + Delta-G solvation = -3889.088565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.55465 -40.11930 -39.12687 -36.56709 -35.30354 -33.97035 -32.65826 -32.25857 -31.47455 -28.90896 -28.13419 -26.81915 -26.46287 -23.50212 -23.33474 -22.43464 -21.77101 -20.50330 -18.19334 -17.59927 -17.12364 -16.85544 -16.62257 -16.42663 -16.12622 -15.61858 -15.46430 -15.35343 -14.59419 -14.11578 -13.87280 -13.73925 -13.44729 -13.19511 -12.98988 -12.92054 -12.71535 -12.42440 -12.20169 -12.00858 -11.91368 -11.62577 -11.51711 -11.47918 -10.94559 -10.83235 -10.73543 -10.72301 -10.41592 -10.22926 -10.13680 -9.75888 -9.56299 -9.31117 -9.17231 -8.78934 -8.61900 -7.85696 -6.14942 -4.15426 1.21308 1.42695 2.33455 2.72192 3.20459 3.26435 3.32967 3.35218 3.65999 4.17108 4.34859 4.50847 4.77928 4.90023 4.95394 5.05511 5.11054 5.12968 5.16207 5.18234 5.22466 5.30141 5.33109 5.49269 5.67849 5.70140 5.81255 5.93334 5.94485 6.00501 6.16788 6.28115 6.32022 6.33817 6.40849 6.58791 6.60674 6.80282 6.86261 6.99031 7.24812 7.50670 7.86877 8.05136 8.21766 8.42987 8.77151 8.89959 9.45069 10.97422 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.005642 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.010849 B = 4961.170773 C = 7125.510712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.493 6.493 5 C -0.096 4.096 6 C -0.095 4.095 7 H 0.108 0.892 8 C -0.142 4.142 9 C 0.527 3.473 10 O -0.569 6.569 11 N -0.578 5.578 12 C 0.205 3.795 13 C -0.536 4.536 14 H 0.081 0.919 15 C 0.080 3.920 16 N -0.890 5.890 17 Si 0.869 3.131 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.167 3.833 22 C 0.119 3.881 23 C -0.149 4.149 24 C -0.083 4.083 25 C -0.181 4.181 26 C 0.093 3.907 27 N -0.468 5.468 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.034 0.966 37 H 0.040 0.960 38 H 0.266 0.734 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.140 0.860 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -15.752 3.942 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.302 3.698 4 O -0.380 6.380 5 C -0.134 4.134 6 C -0.116 4.116 7 H 0.125 0.875 8 C -0.200 4.200 9 C 0.316 3.684 10 O -0.450 6.450 11 N -0.306 5.306 12 C 0.084 3.916 13 C -0.574 4.574 14 H 0.099 0.901 15 C -0.124 4.124 16 N -0.528 5.528 17 Si 0.696 3.304 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.191 1.191 21 C 0.043 3.957 22 C -0.020 4.020 23 C -0.169 4.169 24 C -0.109 4.109 25 C -0.201 4.201 26 C -0.064 4.064 27 N -0.178 5.178 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.158 0.842 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.481 -14.808 3.759 15.478 hybrid contribution -0.379 -0.629 1.060 1.290 sum 2.102 -15.438 4.819 16.309 Atomic orbital electron populations 1.23222 0.76734 1.03306 1.02623 1.86508 1.23175 1.33925 1.84541 1.23862 0.92263 0.81201 0.72470 1.90697 1.67102 1.35921 1.44250 1.21271 0.86784 0.99038 1.06346 1.21070 0.92841 0.94085 1.03612 0.87454 1.21813 1.02761 1.02325 0.93072 1.20327 0.90025 0.80669 0.77407 1.90572 1.64680 1.40270 1.49454 1.47859 1.05342 1.27629 1.49807 1.19970 0.89994 0.88306 0.93291 1.21286 1.32550 1.02874 1.00665 0.90142 1.24801 0.95423 0.95040 0.97094 1.69881 1.37616 1.09308 1.35957 0.86957 0.78976 0.78875 0.85621 1.19873 1.21005 1.19061 1.20192 0.81097 1.00755 0.93634 1.21884 0.94150 0.92360 0.93589 1.22149 0.98836 0.95377 1.00578 1.21563 0.96845 0.99811 0.92707 1.22093 1.02662 0.96951 0.98378 1.22751 0.94329 0.92013 0.97332 1.67575 1.13260 1.37914 0.99020 0.91896 0.88406 0.91971 0.86785 0.88017 0.90729 0.89539 0.93488 0.94854 0.94200 0.92446 0.88155 0.89029 0.84211 0.85217 0.85286 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.80 10.57 -39.26 -0.41 -5.22 16 3 C 0.46 7.03 7.70 36.01 0.28 7.31 16 4 O -0.49 -8.97 13.73 -18.75 -0.26 -9.22 16 5 C -0.10 -1.44 4.85 -27.88 -0.14 -1.57 16 6 C -0.10 -1.73 1.93 -91.77 -0.18 -1.91 16 7 H 0.11 2.14 5.46 -51.93 -0.28 1.86 16 8 C -0.14 -2.66 8.84 37.16 0.33 -2.33 16 9 C 0.53 10.22 6.66 -10.98 -0.07 10.15 16 10 O -0.57 -11.20 15.74 5.56 0.09 -11.11 16 11 N -0.58 -11.64 2.44 -176.44 -0.43 -12.07 16 12 C 0.21 4.64 3.99 -5.20 -0.02 4.62 16 13 C -0.54 -13.99 9.07 -34.44 -0.31 -14.30 16 14 H 0.08 2.30 7.73 -52.48 -0.41 1.89 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -26.02 13.96 55.43 0.77 -25.24 16 17 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 21 C 0.17 3.03 5.68 -5.19 -0.03 3.00 16 22 C 0.12 2.00 6.36 -82.59 -0.53 1.48 16 23 C -0.15 -2.17 9.72 -39.44 -0.38 -2.55 16 24 C -0.08 -1.00 10.18 -39.28 -0.40 -1.40 16 25 C -0.18 -2.08 10.11 -39.44 -0.40 -2.48 16 26 C 0.09 1.27 11.18 -17.55 -0.20 1.07 16 27 N -0.47 -8.00 10.27 -9.47 -0.10 -8.10 16 28 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.11 1.58 8.02 -51.93 -0.42 1.16 16 32 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.41 6.11 -51.93 -0.32 1.09 16 34 H 0.09 1.85 6.88 -51.93 -0.36 1.50 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.03 0.76 4.87 -51.93 -0.25 0.51 16 37 H 0.04 0.92 7.51 -51.93 -0.39 0.53 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.10 1.88 8.07 -51.93 -0.42 1.46 16 40 H 0.09 1.56 7.40 -51.92 -0.38 1.17 16 41 H 0.14 2.00 7.81 -52.49 -0.41 1.59 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -31.85 370.28 -6.69 -38.54 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.18 Total: 6.18 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.08 Total: 4.59 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.25 Total: -45.41 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.58 Total: -25.55 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.85 -6.69 -38.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130718838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.445 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds