Wall clock time and date at job start Tue Mar 31 2020 13:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99920 * 2 1 4 4 O 1.20826 * 120.00051 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99791 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.46837 * 179.97438 * 5 3 2 7 7 H 1.08991 * 109.46931 * 55.00130 * 6 5 3 8 8 C 1.53000 * 109.47087 * 294.99738 * 6 5 3 9 9 C 1.50704 * 109.47026 * 175.00380 * 6 5 3 10 10 O 1.21280 * 119.99958 * 34.24755 * 9 6 5 11 11 N 1.34775 * 119.99755 * 214.25332 * 9 6 5 12 12 C 1.46497 * 120.00102 * 5.06989 * 11 9 6 13 13 C 1.50697 * 109.46835 * 268.73781 * 12 11 9 14 14 H 1.08007 * 120.00159 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00236 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99928 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00023 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47150 * 90.00075 * 17 15 13 19 19 H 1.48499 * 109.47369 * 209.99744 * 17 15 13 20 20 H 1.48497 * 109.47130 * 330.00028 * 17 15 13 21 21 C 1.46498 * 119.99937 * 185.06205 * 11 9 6 22 22 C 1.50701 * 109.47390 * 270.00404 * 21 11 9 23 23 C 1.38229 * 119.62011 * 94.98028 * 22 21 11 24 24 C 1.38628 * 119.16054 * 179.79012 * 23 22 21 25 25 C 1.38671 * 118.41886 * 0.47421 * 24 23 22 26 26 C 1.38184 * 119.16624 * 359.49976 * 25 24 23 27 27 N 1.31855 * 119.61814 * 274.99478 * 22 21 11 28 28 H 1.08997 * 109.47475 * 59.99479 * 1 2 3 29 29 H 1.09000 * 109.46781 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47037 * 300.00172 * 1 2 3 31 31 H 1.09004 * 109.47396 * 60.00326 * 5 3 2 32 32 H 1.08993 * 109.47319 * 300.00024 * 5 3 2 33 33 H 1.09004 * 109.46898 * 66.52713 * 8 6 5 34 34 H 1.08999 * 109.47041 * 186.52006 * 8 6 5 35 35 H 1.08997 * 109.47733 * 306.52561 * 8 6 5 36 36 H 1.08997 * 109.47435 * 28.73569 * 12 11 9 37 37 H 1.08994 * 109.47181 * 148.74223 * 12 11 9 38 38 H 0.97004 * 119.99780 * 180.02562 * 16 15 13 39 39 H 1.08999 * 109.47277 * 149.99814 * 21 11 9 40 40 H 1.09007 * 109.47008 * 30.00516 * 21 11 9 41 41 H 1.07997 * 120.41681 * 359.97438 * 23 22 21 42 42 H 1.07996 * 120.78843 * 180.22321 * 24 23 22 43 43 H 1.08001 * 120.41667 * 179.78557 * 25 24 23 44 44 H 1.07996 * 119.62074 * 180.25426 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 -0.0011 7 1 3.5382 3.2578 0.8407 8 6 3.5596 3.4037 -1.3085 9 6 5.4999 2.8226 0.1221 10 8 6.1970 1.9735 -0.3918 11 7 6.0666 3.8380 0.8034 12 6 5.2246 4.8010 1.5174 13 6 4.9042 5.9592 0.6081 14 1 5.2890 5.9761 -0.4010 15 6 4.1191 6.9969 1.0639 16 7 3.8399 8.0079 0.2704 17 14 3.4518 6.9668 2.8083 18 1 4.4199 7.6277 3.7201 19 1 2.1553 7.6895 2.8550 20 1 3.2498 5.5594 3.2368 21 6 7.5245 3.9787 0.8301 22 6 8.0817 3.2141 2.0031 23 6 8.5374 1.9217 1.8219 24 6 9.0520 1.2286 2.9066 25 6 9.0800 1.8606 4.1406 26 6 8.6071 3.1548 4.2453 27 7 8.1285 3.7854 3.1905 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9557 0.7810 -0.8909 32 1 3.9564 0.7806 0.8891 33 1 2.4711 3.4493 -1.3438 34 1 3.9674 4.4132 -1.3602 35 1 3.9264 2.8200 -2.1527 36 1 4.2992 4.3153 1.8268 37 1 5.7552 5.1656 2.3969 38 1 3.2878 8.7382 0.5912 39 1 7.7862 5.0325 0.9259 40 1 7.9448 3.5827 -0.0945 41 1 8.4957 1.4589 0.8470 42 1 9.4186 0.2190 2.7941 43 1 9.4708 1.3494 5.0080 44 1 8.6292 3.6555 5.2019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130718838.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:17 Heat of formation + Delta-G solvation = -102.320160 kcal Electronic energy + Delta-G solvation = -27633.735734 eV Core-core repulsion = 23743.808595 eV Total energy + Delta-G solvation = -3889.927139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.82683 -41.28904 -40.48559 -37.72696 -36.92271 -35.40773 -34.58214 -33.35644 -32.77001 -30.09520 -29.91811 -27.92585 -27.85514 -24.95817 -24.47143 -24.16387 -22.94064 -21.72992 -19.70436 -19.10940 -18.93189 -18.19211 -17.75053 -17.55598 -17.26394 -17.04700 -16.81609 -16.58212 -16.15193 -15.67958 -15.15640 -15.12355 -14.70608 -14.47275 -14.28457 -14.22832 -14.06292 -13.86339 -13.75281 -13.49913 -13.18882 -12.95908 -12.94587 -12.75811 -12.60593 -12.54526 -12.22882 -12.14509 -11.83056 -11.76180 -11.64818 -11.49303 -10.83800 -10.76946 -10.67105 -10.37364 -9.92100 -9.49230 -8.28833 -6.32693 0.15549 0.42191 1.14445 1.35961 1.36917 1.44755 1.57466 1.69286 2.27334 2.33066 3.00311 3.05680 3.37625 3.48683 3.70434 3.85555 3.88435 4.05787 4.07316 4.22265 4.28842 4.30207 4.33097 4.34030 4.52369 4.59815 4.61275 4.61717 4.70100 4.71270 4.79588 4.88199 4.90875 4.91960 5.11247 5.27181 5.30162 5.31057 5.43661 5.44829 5.58066 5.84236 6.17941 6.54769 6.71052 6.72116 7.13187 7.18472 7.32513 8.86934 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008176 B = 0.005642 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.010849 B = 4961.170773 C = 7125.510712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.466 3.534 4 O -0.529 6.529 5 C -0.089 4.089 6 C -0.094 4.094 7 H 0.088 0.912 8 C -0.132 4.132 9 C 0.527 3.473 10 O -0.569 6.569 11 N -0.583 5.583 12 C 0.221 3.779 13 C -0.526 4.526 14 H 0.043 0.957 15 C 0.026 3.974 16 N -0.937 5.937 17 Si 0.928 3.072 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.250 1.250 21 C 0.167 3.833 22 C 0.095 3.905 23 C -0.156 4.156 24 C -0.078 4.078 25 C -0.164 4.164 26 C 0.080 3.920 27 N -0.507 5.507 28 H 0.061 0.939 29 H 0.135 0.865 30 H 0.059 0.941 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.267 0.733 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.226 -19.073 6.139 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.310 3.690 4 O -0.418 6.418 5 C -0.127 4.127 6 C -0.115 4.115 7 H 0.106 0.894 8 C -0.190 4.190 9 C 0.316 3.684 10 O -0.450 6.450 11 N -0.312 5.312 12 C 0.099 3.901 13 C -0.564 4.564 14 H 0.061 0.939 15 C -0.173 4.173 16 N -0.577 5.577 17 Si 0.752 3.248 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.174 1.174 21 C 0.044 3.956 22 C -0.043 4.043 23 C -0.177 4.177 24 C -0.104 4.104 25 C -0.183 4.183 26 C -0.078 4.078 27 N -0.218 5.218 28 H 0.079 0.921 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.113 0.887 41 H 0.155 0.845 42 H 0.183 0.817 43 H 0.188 0.812 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.954 -18.176 5.950 19.352 hybrid contribution -0.453 0.321 0.337 0.650 sum 2.500 -17.855 6.287 19.094 Atomic orbital electron populations 1.23561 0.74802 1.05753 1.02478 1.86491 1.24995 1.32396 1.83857 1.23832 0.92286 0.81314 0.71533 1.90693 1.67820 1.37181 1.46094 1.21194 0.86911 0.96563 1.08003 1.21000 0.91852 0.96385 1.02237 0.89392 1.21671 1.02321 1.00566 0.94394 1.20494 0.90498 0.80386 0.77038 1.90559 1.64894 1.40193 1.49378 1.47841 1.06129 1.27314 1.49960 1.19621 0.90507 0.87555 0.92438 1.21408 1.31448 1.04005 0.99548 0.93914 1.25584 0.95941 0.94695 1.01115 1.70020 1.39138 1.10386 1.38134 0.86003 0.78289 0.79716 0.80816 1.18982 1.20968 1.17352 1.20178 0.80039 1.00190 0.95198 1.21536 0.96318 0.93321 0.93112 1.22165 0.99294 0.94656 1.01566 1.21987 0.95398 1.01067 0.91919 1.22521 1.00412 0.95893 0.99508 1.23263 0.94014 0.93271 0.97226 1.67465 1.14929 1.39489 0.99881 0.92053 0.84670 0.92211 0.85235 0.86153 0.91032 0.93213 0.91679 0.94410 0.94356 0.92423 0.90062 0.88660 0.84468 0.81687 0.81195 0.80833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.56 113.37 1.20 1.68 16 2 O -0.36 -8.71 10.57 -51.43 -0.54 -9.25 16 3 C 0.47 13.66 7.70 71.24 0.55 14.21 16 4 O -0.53 -19.06 13.73 21.96 0.30 -18.76 16 5 C -0.09 -2.51 4.85 29.85 0.14 -2.37 16 6 C -0.09 -3.41 1.93 -11.54 -0.02 -3.43 16 7 H 0.09 3.56 5.46 -2.39 -0.01 3.54 16 8 C -0.13 -5.06 8.84 71.98 0.64 -4.43 16 9 C 0.53 20.50 6.66 87.66 0.58 21.08 16 10 O -0.57 -22.01 15.74 -3.03 -0.05 -22.05 16 11 N -0.58 -24.08 2.44 -830.52 -2.03 -26.11 16 12 C 0.22 10.19 3.99 85.63 0.34 10.53 16 13 C -0.53 -28.71 9.07 25.60 0.23 -28.47 16 14 H 0.04 2.61 7.73 -2.91 -0.02 2.59 16 15 C 0.03 1.46 5.47 84.65 0.46 1.92 16 16 N -0.94 -57.01 13.96 21.45 0.30 -56.71 16 17 Si 0.93 43.24 27.47 68.60 1.88 45.12 16 18 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.25 -10.90 6.54 99.48 0.65 -10.24 16 21 C 0.17 6.28 5.68 85.63 0.49 6.77 16 22 C 0.09 3.17 6.36 42.55 0.27 3.44 16 23 C -0.16 -4.31 9.72 22.36 0.22 -4.09 16 24 C -0.08 -1.59 10.18 22.47 0.23 -1.36 16 25 C -0.16 -3.09 10.11 22.36 0.23 -2.86 16 26 C 0.08 1.97 11.18 84.67 0.95 2.92 16 27 N -0.51 -17.00 10.27 -183.89 -1.89 -18.89 16 28 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 29 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 31 H 0.13 3.29 8.02 -2.38 -0.02 3.27 16 32 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.07 2.78 6.11 -2.39 -0.01 2.76 16 34 H 0.05 2.25 6.88 -2.39 -0.02 2.24 16 35 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.04 1.74 4.87 -2.39 -0.01 1.73 16 37 H 0.04 1.80 7.51 -2.39 -0.02 1.78 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.08 3.26 8.07 -2.39 -0.02 3.24 16 40 H 0.10 3.38 7.40 -2.38 -0.02 3.36 16 41 H 0.14 3.76 7.81 -2.91 -0.02 3.74 16 42 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 44 H 0.17 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -71.82 370.28 5.43 -66.39 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.95 Total: 24.74 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.50 Total: 15.53 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -3.62 Total: -101.71 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -0.29 Total: -50.07 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -71.82 5.43 -66.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130718838.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.935 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds