Wall clock time and date at job start Tue Mar 31 2020 13:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35654 * 116.99629 * 2 1 4 4 C 1.38704 * 120.15529 * 0.23120 * 3 2 1 5 5 C 1.38052 * 120.08690 * 180.27700 * 4 3 2 6 6 C 1.38552 * 120.39000 * 359.74615 * 5 4 3 7 7 C 1.37788 * 120.29915 * 359.97438 * 6 5 4 8 8 C 1.39713 * 119.90959 * 0.02562 * 7 6 5 9 9 C 1.47528 * 120.19494 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00326 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00165 * 359.97438 * 9 8 7 12 12 C 1.46498 * 120.00536 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47249 * 180.02562 * 12 11 9 14 14 O 1.21279 * 120.00235 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99900 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99912 * 359.97438 * 15 13 12 17 17 C 1.46495 * 120.00002 * 179.97438 * 15 13 12 18 18 H 1.09002 * 109.47308 * 359.97438 * 17 15 13 19 19 C 1.53001 * 109.47398 * 119.99746 * 17 15 13 20 20 C 1.50702 * 109.47171 * 239.99670 * 17 15 13 21 21 H 1.08001 * 120.00089 * 325.05166 * 20 17 15 22 22 C 1.37880 * 119.99796 * 145.04858 * 20 17 15 23 23 N 1.31514 * 119.99543 * 176.46253 * 22 20 17 24 24 Si 1.86794 * 120.00028 * 356.46680 * 22 20 17 25 25 H 1.48499 * 109.47255 * 274.92138 * 24 22 20 26 26 H 1.48497 * 109.47373 * 34.92801 * 24 22 20 27 27 H 1.48507 * 109.46963 * 154.92420 * 24 22 20 28 28 H 1.08997 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46882 * 299.99715 * 1 2 3 30 30 H 1.08995 * 109.47208 * 59.99602 * 1 2 3 31 31 H 1.08005 * 119.95974 * 0.02562 * 4 3 2 32 32 H 1.08002 * 119.80798 * 179.76414 * 5 4 3 33 33 H 1.08000 * 119.85239 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.04792 * 180.02562 * 7 6 5 35 35 H 0.97004 * 119.99691 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.46680 * 59.99733 * 12 11 9 37 37 H 1.09002 * 109.47162 * 300.00228 * 12 11 9 38 38 H 1.09003 * 109.47307 * 270.00158 * 16 15 13 39 39 H 1.09006 * 109.47299 * 30.00251 * 16 15 13 40 40 H 1.09005 * 109.47170 * 150.00291 * 16 15 13 41 41 H 1.09001 * 109.47150 * 305.54548 * 19 17 15 42 42 H 1.09004 * 109.47201 * 65.54154 * 19 17 15 43 43 H 1.08997 * 109.47748 * 185.54369 * 19 17 15 44 44 H 0.97005 * 119.99553 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3740 0.0048 5 6 1.9206 3.6033 -0.0009 6 6 3.3038 3.6837 -0.0063 7 6 4.0668 2.5364 -0.0054 8 6 3.4442 1.2857 0.0004 9 6 4.2550 0.0532 0.0009 10 8 3.7095 -1.0334 0.0055 11 7 5.6005 0.1317 -0.0049 12 6 6.4057 -1.0921 -0.0050 13 6 7.8687 -0.7309 -0.0113 14 8 8.2057 0.4342 -0.0158 15 7 8.8028 -1.7025 -0.0130 16 6 8.3958 -3.1098 -0.0082 17 6 10.2250 -1.3513 -0.0197 18 1 10.3314 -0.2665 -0.0231 19 6 10.8983 -1.9264 1.2280 20 6 10.8779 -1.9234 -1.2516 21 1 10.5522 -2.8761 -1.6424 22 6 11.8910 -1.2305 -1.8798 23 7 12.5080 -1.7610 -2.9130 24 14 12.3873 0.4614 -1.2631 25 1 11.5035 1.4886 -1.8706 26 1 12.2565 0.5075 0.2153 27 1 13.7967 0.7333 -1.6440 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.2139 2.3196 0.0090 32 1 1.3304 4.5078 -0.0010 33 1 3.7861 4.6500 -0.0104 34 1 5.1447 2.6038 -0.0092 35 1 6.0357 0.9986 -0.0097 36 1 6.1725 -1.6804 -0.8925 37 1 6.1798 -1.6758 0.8875 38 1 8.2991 -3.4566 1.0207 39 1 7.4377 -3.2128 -0.5179 40 1 9.1477 -3.7073 -0.5238 41 1 10.3641 -1.5903 2.1167 42 1 10.8785 -3.0153 1.1824 43 1 11.9319 -1.5835 1.2740 44 1 13.2205 -1.2733 -3.3552 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154833816.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:53 Heat of formation + Delta-G solvation = -71.780282 kcal Electronic energy + Delta-G solvation = -26644.998883 eV Core-core repulsion = 22756.396052 eV Total energy + Delta-G solvation = -3888.602831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75008 -39.61388 -38.59715 -37.50093 -35.66399 -34.22283 -32.76776 -31.76739 -30.56358 -30.38108 -27.87480 -27.12141 -26.20913 -25.28419 -23.88566 -22.30606 -21.19078 -20.43629 -19.05907 -18.27238 -17.54879 -17.03247 -16.64442 -16.12222 -16.04722 -15.63051 -15.55203 -15.14083 -14.92739 -14.81509 -14.43103 -13.97367 -13.75511 -13.40741 -13.06593 -12.70958 -12.66798 -12.48805 -12.46021 -12.37768 -12.07212 -11.88517 -11.78342 -11.44803 -11.40479 -11.39631 -11.11296 -10.75005 -10.49150 -9.84852 -9.80883 -9.37583 -9.36158 -9.19429 -9.00525 -8.65851 -8.48591 -7.78840 -6.20707 -4.23664 0.63949 1.12216 2.83213 3.00885 3.05730 3.12161 3.28878 3.35353 3.41322 3.68316 3.84012 4.34542 4.43255 4.47712 4.73884 4.78471 4.87381 4.89478 4.99839 5.06842 5.20469 5.22110 5.27501 5.46550 5.50431 5.58523 5.73724 5.86528 5.94632 5.97549 6.14936 6.22085 6.30642 6.35807 6.38524 6.42937 6.54099 6.86810 7.01392 7.10965 7.37999 7.56305 7.62092 8.01419 8.31250 8.42580 8.72861 8.81494 9.41049 10.91067 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.002846 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.652368 B = 9836.094941 C =10671.537813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.280 6.280 3 C 0.184 3.816 4 C -0.223 4.223 5 C -0.054 4.054 6 C -0.167 4.167 7 C -0.045 4.045 8 C -0.169 4.169 9 C 0.560 3.440 10 O -0.525 6.525 11 N -0.714 5.714 12 C 0.103 3.897 13 C 0.499 3.501 14 O -0.558 6.558 15 N -0.581 5.581 16 C 0.077 3.923 17 C 0.222 3.778 18 H 0.065 0.935 19 C -0.147 4.147 20 C -0.527 4.527 21 H 0.079 0.921 22 C 0.080 3.920 23 N -0.890 5.890 24 Si 0.876 3.124 25 H -0.271 1.271 26 H -0.263 1.263 27 H -0.287 1.287 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.409 0.591 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.400 7.230 7.420 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.190 6.190 3 C 0.136 3.864 4 C -0.242 4.242 5 C -0.073 4.073 6 C -0.185 4.185 7 C -0.063 4.063 8 C -0.173 4.173 9 C 0.348 3.652 10 O -0.402 6.402 11 N -0.370 5.370 12 C -0.024 4.024 13 C 0.286 3.714 14 O -0.438 6.438 15 N -0.311 5.311 16 C -0.067 4.067 17 C 0.122 3.878 18 H 0.083 0.917 19 C -0.205 4.205 20 C -0.565 4.565 21 H 0.097 0.903 22 C -0.124 4.124 23 N -0.527 5.527 24 Si 0.703 3.297 25 H -0.196 1.196 26 H -0.188 1.188 27 H -0.214 1.214 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.155 0.845 35 H 0.248 0.752 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.324 6.822 7.277 24.451 hybrid contribution 0.339 1.329 0.110 1.376 sum -21.985 8.151 7.387 24.583 Atomic orbital electron populations 1.23160 0.78831 1.04326 1.01090 1.86392 1.20660 1.25387 1.86609 1.19045 0.90904 0.84931 0.91561 1.21229 1.00277 0.92059 1.10636 1.21130 0.94748 0.97060 0.94334 1.21023 0.93790 0.98628 1.05077 1.21325 1.00418 0.90803 0.93800 1.19333 0.90771 0.94041 1.13157 1.17914 0.81579 0.88763 0.76976 1.90810 1.71672 1.28546 1.49137 1.45646 1.05580 1.10308 1.75486 1.21146 0.89046 0.87917 1.04297 1.20334 0.87452 0.86203 0.77454 1.90612 1.82026 1.18890 1.52284 1.48300 1.07858 1.05473 1.69510 1.21738 1.01001 0.83155 1.00805 1.19347 0.75791 0.97790 0.94866 0.91738 1.22216 1.00283 1.01058 0.96984 1.21115 1.18220 1.07451 1.09714 0.90253 1.24965 0.95625 0.97686 0.94174 1.69887 1.23653 1.38252 1.20912 0.86878 0.77642 0.85080 0.80130 1.19620 1.18811 1.21364 0.87954 0.92665 0.92628 0.84848 0.85341 0.85100 0.84512 0.75231 0.88540 0.88798 0.93364 0.92105 0.89605 0.95464 0.93028 0.92545 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.28 -3.60 8.57 -40.54 -0.35 -3.95 16 3 C 0.18 2.26 6.70 -38.69 -0.26 2.00 16 4 C -0.22 -2.02 9.03 -39.48 -0.36 -2.37 16 5 C -0.05 -0.43 10.03 -39.53 -0.40 -0.83 16 6 C -0.17 -1.47 10.02 -39.63 -0.40 -1.87 16 7 C -0.04 -0.49 9.54 -39.20 -0.37 -0.86 16 8 C -0.17 -2.25 5.89 -104.84 -0.62 -2.87 16 9 C 0.56 8.85 7.76 -12.47 -0.10 8.75 16 10 O -0.52 -9.68 15.16 -16.59 -0.25 -9.93 16 11 N -0.71 -10.95 5.48 -62.54 -0.34 -11.29 16 12 C 0.10 1.63 4.71 -5.20 -0.02 1.61 16 13 C 0.50 9.74 7.74 -10.99 -0.09 9.66 16 14 O -0.56 -12.47 14.99 5.56 0.08 -12.38 16 15 N -0.58 -11.69 2.75 -175.26 -0.48 -12.17 16 16 C 0.08 1.23 9.40 59.85 0.56 1.79 16 17 C 0.22 5.21 2.27 -69.08 -0.16 5.06 16 18 H 0.06 1.65 4.11 -51.93 -0.21 1.44 16 19 C -0.15 -3.02 9.09 37.16 0.34 -2.68 16 20 C -0.53 -14.18 8.72 -34.44 -0.30 -14.48 16 21 H 0.08 2.25 6.82 -52.49 -0.36 1.90 16 22 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 23 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 24 Si 0.88 21.76 26.91 -169.99 -4.57 17.19 16 25 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.26 -6.29 6.73 56.52 0.38 -5.91 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 30 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 31 H 0.13 0.85 6.30 -52.48 -0.33 0.52 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.14 1.36 6.40 -52.49 -0.34 1.02 16 35 H 0.41 6.01 5.47 -40.82 -0.22 5.79 16 36 H 0.10 1.48 7.40 -51.93 -0.38 1.10 16 37 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 40 H 0.09 1.49 6.56 -51.93 -0.34 1.15 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 43 H 0.06 1.18 7.97 -51.93 -0.41 0.76 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -34.90 362.57 -6.78 -41.68 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.83 Total: 4.88 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.27 Total: 6.19 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.05 Total: -49.14 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.52 Total: -26.27 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.57 Total: 17.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.90 -6.78 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154833816.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.102 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds