Wall clock time and date at job start Tue Mar 31 2020 12:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46802 * 2 1 4 4 O 1.45200 * 109.47049 * 180.02562 * 3 2 1 5 5 C 1.34746 * 117.00498 * 179.97438 * 4 3 2 6 6 O 1.21510 * 120.00009 * 0.02562 * 5 4 3 7 7 C 1.47450 * 120.00464 * 180.02562 * 5 4 3 8 8 C 1.39817 * 120.08017 * 180.02562 * 7 5 4 9 9 C 1.37639 * 119.91682 * 180.02562 * 8 7 5 10 10 C 1.39146 * 120.08158 * 359.97438 * 9 8 7 11 11 N 1.39406 * 119.92146 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00090 * 146.57581 * 11 10 9 13 13 O 1.21581 * 119.99835 * 354.68279 * 12 11 10 14 14 N 1.34772 * 119.99866 * 174.68543 * 12 11 10 15 15 C 1.46499 * 119.99920 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.47012 * 324.99729 * 15 14 12 17 17 C 1.52999 * 109.47411 * 84.99803 * 15 14 12 18 18 C 1.50698 * 109.47378 * 204.99960 * 15 14 12 19 19 H 1.08003 * 119.99493 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00243 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99884 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99931 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46889 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47181 * 300.00267 * 22 20 18 25 25 H 1.48499 * 109.47032 * 60.00189 * 22 20 18 26 26 C 1.39150 * 120.15963 * 0.25593 * 10 9 8 27 27 C 1.37639 * 120.07868 * 359.48848 * 26 10 9 28 28 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46545 * 299.99479 * 1 2 3 30 30 H 1.09001 * 109.47361 * 59.99601 * 1 2 3 31 31 H 1.09004 * 109.46545 * 240.00521 * 2 1 3 32 32 H 1.08995 * 109.47111 * 120.00028 * 2 1 3 33 33 H 1.08997 * 109.47473 * 60.00733 * 3 2 1 34 34 H 1.09001 * 109.47488 * 300.00321 * 3 2 1 35 35 H 1.08002 * 120.03966 * 359.97438 * 8 7 5 36 36 H 1.08005 * 119.95558 * 179.97438 * 9 8 7 37 37 H 0.97001 * 119.99544 * 326.57849 * 11 10 9 38 38 H 0.96998 * 120.00162 * 359.97438 * 14 12 11 39 39 H 1.08995 * 109.47338 * 180.02562 * 17 15 14 40 40 H 1.09004 * 109.47332 * 300.00405 * 17 15 14 41 41 H 1.09005 * 109.47093 * 59.99975 * 17 15 14 42 42 H 0.97002 * 119.99653 * 179.97438 * 21 20 18 43 43 H 1.08001 * 119.96268 * 179.72962 * 26 10 9 44 44 H 1.08005 * 120.04027 * 180.22984 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4920 1.4425 -0.0006 5 6 4.1038 2.6431 -0.0012 6 8 3.4420 3.6622 -0.0008 7 6 5.5762 2.7203 -0.0024 8 6 6.2127 3.9652 -0.0025 9 6 7.5874 4.0334 -0.0042 10 6 8.3436 2.8654 -0.0053 11 7 9.7357 2.9383 -0.0075 12 6 10.4607 2.0008 0.6344 13 8 9.9017 1.1473 1.2956 14 7 11.8053 2.0096 0.5434 15 6 12.5933 0.9902 1.2407 16 1 12.1103 0.7409 2.1855 17 6 12.6890 -0.2643 0.3701 18 6 13.9776 1.5220 1.5093 19 1 14.2438 2.5194 1.1919 20 6 14.9041 0.7353 2.1601 21 7 14.5800 -0.4794 2.5461 22 14 16.6201 1.3943 2.4924 23 1 17.4188 0.3610 3.1993 24 1 17.2782 1.7329 1.2050 25 1 16.5277 2.6125 3.3365 26 6 7.7136 1.6247 -0.0100 27 6 6.3393 1.5488 -0.0030 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 5.6263 4.8722 -0.0021 36 1 8.0797 4.9947 -0.0047 37 1 10.1826 3.6638 -0.4710 38 1 12.2513 2.6903 0.0156 39 1 13.2749 -1.0229 0.8891 40 1 11.6878 -0.6490 0.1758 41 1 13.1721 -0.0150 -0.5747 42 1 15.2320 -1.0330 3.0037 43 1 8.3037 0.7201 -0.0152 44 1 5.8510 0.5854 -0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155548116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:57 Heat of formation + Delta-G solvation = -99.578933 kcal Electronic energy + Delta-G solvation = -25595.115661 eV Core-core repulsion = 21705.307390 eV Total energy + Delta-G solvation = -3889.808271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.75518 -40.14127 -38.37878 -36.79422 -35.23478 -34.38799 -34.12129 -32.50459 -31.09455 -30.26689 -28.56795 -27.01789 -25.31708 -24.11587 -22.89724 -21.98447 -21.68713 -20.71813 -19.93827 -18.37179 -18.02353 -17.67395 -16.94663 -16.82533 -16.03377 -15.27972 -15.10177 -15.00740 -14.69781 -14.50257 -14.13329 -14.02582 -13.53435 -13.39092 -13.21213 -13.01280 -12.64919 -12.62493 -12.45156 -12.37182 -11.81325 -11.53759 -11.50910 -11.30156 -11.15409 -11.03304 -10.84153 -10.71914 -10.62277 -10.41093 -10.28895 -10.24102 -9.59092 -9.12865 -9.03648 -8.62259 -8.26869 -7.90277 -6.17921 -4.27606 0.65054 1.36295 2.45115 2.47896 3.00880 3.22167 3.27996 3.29387 3.54809 3.91654 4.27409 4.41380 4.52595 4.62340 4.71213 4.84569 4.89297 4.90493 5.05964 5.14829 5.17926 5.23506 5.24732 5.39570 5.52720 5.56940 5.67793 5.76239 5.94512 6.07255 6.25348 6.28682 6.30234 6.50345 6.71971 6.89491 6.98087 7.01809 7.12788 7.34484 7.55252 7.65281 7.73854 7.89977 8.08449 8.62051 8.74737 9.09213 9.40184 10.88058 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.002052 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.646485 B =13640.060975 C =14402.002997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.067 3.933 4 O -0.354 6.354 5 C 0.517 3.483 6 O -0.517 6.517 7 C -0.166 4.166 8 C -0.029 4.029 9 C -0.173 4.173 10 C 0.227 3.773 11 N -0.694 5.694 12 C 0.691 3.309 13 O -0.576 6.576 14 N -0.715 5.715 15 C 0.279 3.721 16 H 0.051 0.949 17 C -0.148 4.148 18 C -0.536 4.536 19 H 0.061 0.939 20 C 0.067 3.933 21 N -0.882 5.882 22 Si 0.904 3.096 23 H -0.285 1.285 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.140 4.140 27 C -0.036 4.036 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.406 0.594 38 H 0.387 0.613 39 H 0.091 0.909 40 H 0.015 0.985 41 H 0.026 0.974 42 H 0.266 0.734 43 H 0.148 0.852 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.393 5.104 -8.063 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.007 4.007 4 O -0.271 6.271 5 C 0.363 3.637 6 O -0.408 6.408 7 C -0.169 4.169 8 C -0.048 4.048 9 C -0.194 4.194 10 C 0.128 3.872 11 N -0.341 5.341 12 C 0.391 3.609 13 O -0.453 6.453 14 N -0.366 5.366 15 C 0.178 3.822 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.575 4.575 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.161 4.161 27 C -0.055 4.055 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.241 0.759 38 H 0.220 0.780 39 H 0.110 0.890 40 H 0.034 0.966 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.165 0.835 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.878 4.349 -7.318 22.547 hybrid contribution 1.321 1.130 -0.239 1.755 sum -19.557 5.479 -7.557 21.670 Atomic orbital electron populations 1.21691 0.94185 1.02560 1.02280 1.21529 0.96084 0.94724 1.03964 1.23120 0.76338 0.98609 1.02612 1.86547 1.23285 1.32940 1.84316 1.21144 0.89135 0.81158 0.72260 1.90812 1.66972 1.36053 1.46928 1.18953 0.88615 0.95077 1.14216 1.20920 0.93621 0.96566 0.93698 1.20789 0.93362 0.97364 1.07911 1.17859 0.82502 0.93904 0.92924 1.42939 1.04200 1.30494 1.56477 1.16183 0.82870 0.81631 0.80216 1.90912 1.70484 1.39102 1.44812 1.45913 1.03008 1.34319 1.53360 1.18729 0.89065 0.83220 0.91223 0.93155 1.22106 0.98376 1.01082 0.99102 1.21148 0.96098 1.00916 1.39314 0.92098 1.24880 0.98956 0.94772 0.95057 1.69889 1.35271 1.08220 1.38545 0.86476 0.83356 0.78596 0.78467 1.21085 1.20159 1.20173 1.21283 0.94262 0.97984 1.02531 1.21307 0.93191 0.97806 0.93222 0.91625 0.92322 0.92351 0.90659 0.90590 0.91207 0.91248 0.84482 0.84800 0.75851 0.78027 0.89006 0.96555 0.95442 0.92417 0.83457 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.13 -0.86 6.31 -26.73 -0.17 -1.02 16 3 C 0.07 0.61 5.48 37.15 0.20 0.81 16 4 O -0.35 -4.13 9.46 -40.62 -0.38 -4.51 16 5 C 0.52 6.80 7.89 34.48 0.27 7.07 16 6 O -0.52 -7.70 16.13 -19.27 -0.31 -8.01 16 7 C -0.17 -2.13 5.88 -104.97 -0.62 -2.75 16 8 C -0.03 -0.34 9.58 -39.21 -0.38 -0.72 16 9 C -0.17 -1.98 9.94 -39.46 -0.39 -2.37 16 10 C 0.23 3.15 6.27 -83.74 -0.53 2.62 16 11 N -0.69 -9.75 5.32 -14.22 -0.08 -9.83 16 12 C 0.69 13.13 8.25 -86.92 -0.72 12.41 16 13 O -0.58 -13.18 13.69 5.29 0.07 -13.10 16 14 N -0.72 -14.01 5.07 -59.82 -0.30 -14.32 16 15 C 0.28 6.84 2.56 -69.08 -0.18 6.67 16 16 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 17 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 18 C -0.54 -13.73 8.73 -34.44 -0.30 -14.03 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 20 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -24.26 11.32 55.43 0.63 -23.63 16 22 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 23 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.14 -2.06 8.62 -39.46 -0.34 -2.40 16 27 C -0.04 -0.47 9.60 -39.21 -0.38 -0.84 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.14 1.45 7.64 -52.49 -0.40 1.04 16 36 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.41 4.19 8.83 -40.82 -0.36 3.83 16 38 H 0.39 6.38 8.56 -40.82 -0.35 6.03 16 39 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.15 2.46 6.42 -52.49 -0.34 2.12 16 44 H 0.14 1.56 7.60 -52.48 -0.40 1.16 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -31.44 375.52 -8.96 -40.40 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.32 Total: 8.73 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.90 Total: 3.48 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.25 Total: -47.78 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.62 Total: -25.63 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.44 -8.96 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155548116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.178 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds