Wall clock time and date at job start Tue Mar 31 2020 12:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46802 * 2 1 4 4 O 1.45200 * 109.47049 * 180.02562 * 3 2 1 5 5 C 1.34746 * 117.00498 * 179.97438 * 4 3 2 6 6 O 1.21510 * 120.00009 * 0.02562 * 5 4 3 7 7 C 1.47450 * 120.00464 * 180.02562 * 5 4 3 8 8 C 1.39817 * 120.08017 * 180.02562 * 7 5 4 9 9 C 1.37639 * 119.91682 * 180.02562 * 8 7 5 10 10 C 1.39146 * 120.08158 * 359.97438 * 9 8 7 11 11 N 1.39406 * 119.92146 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00090 * 146.57581 * 11 10 9 13 13 O 1.21581 * 119.99835 * 354.68279 * 12 11 10 14 14 N 1.34772 * 119.99866 * 174.68543 * 12 11 10 15 15 C 1.46499 * 119.99920 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.47012 * 324.99729 * 15 14 12 17 17 C 1.52999 * 109.47411 * 84.99803 * 15 14 12 18 18 C 1.50698 * 109.47378 * 204.99960 * 15 14 12 19 19 H 1.08003 * 119.99493 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00243 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99884 * 0.02562 * 20 18 15 22 22 Si 1.86800 * 119.99931 * 179.97438 * 20 18 15 23 23 H 1.48501 * 109.46889 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47181 * 300.00267 * 22 20 18 25 25 H 1.48499 * 109.47032 * 60.00189 * 22 20 18 26 26 C 1.39150 * 120.15963 * 0.25593 * 10 9 8 27 27 C 1.37639 * 120.07868 * 359.48848 * 26 10 9 28 28 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46545 * 299.99479 * 1 2 3 30 30 H 1.09001 * 109.47361 * 59.99601 * 1 2 3 31 31 H 1.09004 * 109.46545 * 240.00521 * 2 1 3 32 32 H 1.08995 * 109.47111 * 120.00028 * 2 1 3 33 33 H 1.08997 * 109.47473 * 60.00733 * 3 2 1 34 34 H 1.09001 * 109.47488 * 300.00321 * 3 2 1 35 35 H 1.08002 * 120.03966 * 359.97438 * 8 7 5 36 36 H 1.08005 * 119.95558 * 179.97438 * 9 8 7 37 37 H 0.97001 * 119.99544 * 326.57849 * 11 10 9 38 38 H 0.96998 * 120.00162 * 359.97438 * 14 12 11 39 39 H 1.08995 * 109.47338 * 180.02562 * 17 15 14 40 40 H 1.09004 * 109.47332 * 300.00405 * 17 15 14 41 41 H 1.09005 * 109.47093 * 59.99975 * 17 15 14 42 42 H 0.97002 * 119.99653 * 179.97438 * 21 20 18 43 43 H 1.08001 * 119.96268 * 179.72962 * 26 10 9 44 44 H 1.08005 * 120.04027 * 180.22984 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4920 1.4425 -0.0006 5 6 4.1038 2.6431 -0.0012 6 8 3.4420 3.6622 -0.0008 7 6 5.5762 2.7203 -0.0024 8 6 6.2127 3.9652 -0.0025 9 6 7.5874 4.0334 -0.0042 10 6 8.3436 2.8654 -0.0053 11 7 9.7357 2.9383 -0.0075 12 6 10.4607 2.0008 0.6344 13 8 9.9017 1.1473 1.2956 14 7 11.8053 2.0096 0.5434 15 6 12.5933 0.9902 1.2407 16 1 12.1103 0.7409 2.1855 17 6 12.6890 -0.2643 0.3701 18 6 13.9776 1.5220 1.5093 19 1 14.2438 2.5194 1.1919 20 6 14.9041 0.7353 2.1601 21 7 14.5800 -0.4794 2.5461 22 14 16.6201 1.3943 2.4924 23 1 17.4188 0.3610 3.1993 24 1 17.2782 1.7329 1.2050 25 1 16.5277 2.6125 3.3365 26 6 7.7136 1.6247 -0.0100 27 6 6.3393 1.5488 -0.0030 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 5.6263 4.8722 -0.0021 36 1 8.0797 4.9947 -0.0047 37 1 10.1826 3.6638 -0.4710 38 1 12.2513 2.6903 0.0156 39 1 13.2749 -1.0229 0.8891 40 1 11.6878 -0.6490 0.1758 41 1 13.1721 -0.0150 -0.5747 42 1 15.2320 -1.0330 3.0037 43 1 8.3037 0.7201 -0.0152 44 1 5.8510 0.5854 -0.0030 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155548116.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:56 Heat of formation + Delta-G solvation = -118.261966 kcal Electronic energy + Delta-G solvation = -25595.925818 eV Core-core repulsion = 21705.307390 eV Total energy + Delta-G solvation = -3890.618428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.87217 -41.36929 -39.59045 -37.77689 -36.89741 -35.79263 -34.77873 -34.33902 -32.10753 -31.63233 -30.14915 -27.73515 -27.31781 -25.23552 -23.94758 -23.26468 -22.48416 -21.96558 -21.50617 -19.87704 -19.03932 -18.89316 -17.97908 -17.83432 -17.68261 -16.90139 -16.55147 -16.04488 -15.73754 -15.63084 -15.47009 -15.16889 -14.92996 -14.47145 -14.38243 -14.06909 -13.82292 -13.73167 -13.59422 -13.41821 -13.05957 -12.98967 -12.86642 -12.71886 -12.37807 -12.25254 -12.14480 -12.14278 -12.08473 -11.67827 -11.52099 -11.45495 -11.14798 -11.10293 -10.58536 -10.05488 -9.88174 -9.18056 -8.16427 -6.33559 -0.40656 0.36235 1.37247 1.46918 1.48869 1.56171 1.58971 1.71445 2.15236 2.43052 2.79379 3.14405 3.37960 3.59379 3.82150 3.91251 3.92103 3.93483 4.24079 4.26346 4.33255 4.49645 4.51946 4.55025 4.74005 4.75650 4.94214 4.95741 5.05250 5.10394 5.11266 5.16458 5.20113 5.23327 5.28395 5.37683 5.42610 5.45901 5.59470 5.65763 5.83390 5.88363 6.10255 6.21834 6.65475 6.73654 7.18201 7.34726 7.62425 8.89703 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.002052 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.646485 B =13640.060975 C =14402.002997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C 0.060 3.940 4 O -0.358 6.358 5 C 0.518 3.482 6 O -0.537 6.537 7 C -0.171 4.171 8 C -0.027 4.027 9 C -0.153 4.153 10 C 0.207 3.793 11 N -0.673 5.673 12 C 0.692 3.308 13 O -0.619 6.619 14 N -0.710 5.710 15 C 0.287 3.713 16 H 0.001 0.999 17 C -0.134 4.134 18 C -0.547 4.547 19 H 0.075 0.925 20 C 0.015 3.985 21 N -0.916 5.916 22 Si 0.973 3.027 23 H -0.288 1.288 24 H -0.264 1.264 25 H -0.271 1.271 26 C -0.158 4.158 27 C -0.034 4.034 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.169 0.831 37 H 0.427 0.573 38 H 0.405 0.595 39 H 0.067 0.933 40 H 0.013 0.987 41 H 0.040 0.960 42 H 0.265 0.735 43 H 0.121 0.879 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.666 7.184 -9.019 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.013 4.013 4 O -0.275 6.275 5 C 0.366 3.634 6 O -0.429 6.429 7 C -0.173 4.173 8 C -0.046 4.046 9 C -0.174 4.174 10 C 0.109 3.891 11 N -0.322 5.322 12 C 0.393 3.607 13 O -0.499 6.499 14 N -0.363 5.363 15 C 0.184 3.816 16 H 0.019 0.981 17 C -0.193 4.193 18 C -0.585 4.585 19 H 0.093 0.907 20 C -0.186 4.186 21 N -0.554 5.554 22 Si 0.797 3.203 23 H -0.214 1.214 24 H -0.189 1.189 25 H -0.196 1.196 26 C -0.179 4.179 27 C -0.053 4.053 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.173 0.827 36 H 0.187 0.813 37 H 0.266 0.734 38 H 0.241 0.759 39 H 0.086 0.914 40 H 0.032 0.968 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.139 0.861 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.178 6.484 -8.329 23.662 hybrid contribution 1.241 0.473 0.046 1.329 sum -19.937 6.957 -8.283 22.682 Atomic orbital electron populations 1.21692 0.92748 1.03371 1.02646 1.21548 0.97198 0.93150 1.03989 1.23398 0.74872 1.00224 1.02801 1.86549 1.24857 1.32231 1.83830 1.21183 0.89210 0.81271 0.71763 1.90799 1.67367 1.36669 1.48017 1.19118 0.88669 0.95520 1.13992 1.21189 0.93911 0.96753 0.92710 1.21048 0.93002 0.97740 1.05601 1.18053 0.82220 0.94528 0.94280 1.42507 1.04207 1.29769 1.55672 1.16243 0.82614 0.81860 0.80007 1.90892 1.71218 1.41109 1.46701 1.45462 1.03267 1.34061 1.53481 1.18284 0.89008 0.84585 0.89752 0.98094 1.21922 0.97853 1.00364 0.99201 1.21496 0.96368 1.01511 1.39105 0.90650 1.25783 1.02994 0.94938 0.94852 1.70045 1.36521 1.09544 1.39337 0.85387 0.78453 0.77768 0.78647 1.21387 1.18856 1.19646 1.21167 0.94880 0.97694 1.04133 1.21327 0.92505 0.98570 0.92887 0.90594 0.92094 0.91881 0.90457 0.90766 0.91214 0.90884 0.82727 0.81343 0.73403 0.75921 0.91448 0.96769 0.94051 0.92544 0.86109 0.83494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 71.98 0.71 -0.60 16 2 C -0.12 -1.53 6.31 30.59 0.19 -1.34 16 3 C 0.06 1.04 5.48 71.98 0.39 1.44 16 4 O -0.36 -8.11 9.46 -56.56 -0.54 -8.65 16 5 C 0.52 13.16 7.89 70.25 0.55 13.71 16 6 O -0.54 -15.35 16.13 19.80 0.32 -15.03 16 7 C -0.17 -4.19 5.88 -20.09 -0.12 -4.30 16 8 C -0.03 -0.57 9.58 22.51 0.22 -0.35 16 9 C -0.15 -3.08 9.94 22.35 0.22 -2.85 16 10 C 0.21 5.48 6.27 38.37 0.24 5.72 16 11 N -0.67 -17.98 5.32 -317.17 -1.69 -19.67 16 12 C 0.69 26.36 8.25 179.06 1.48 27.84 16 13 O -0.62 -29.31 13.69 -3.97 -0.05 -29.36 16 14 N -0.71 -27.63 5.07 -461.42 -2.34 -29.97 16 15 C 0.29 14.37 2.56 44.24 0.11 14.48 16 16 H 0.00 0.07 7.58 -2.38 -0.02 0.05 16 17 C -0.13 -6.60 9.26 71.98 0.67 -5.93 16 18 C -0.55 -27.84 8.73 25.60 0.22 -27.62 16 19 H 0.08 3.54 7.74 -2.91 -0.02 3.51 16 20 C 0.01 0.76 5.30 84.65 0.45 1.21 16 21 N -0.92 -51.46 11.32 21.45 0.24 -51.22 16 22 Si 0.97 40.87 29.54 68.60 2.03 42.90 16 23 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 C -0.16 -4.70 8.62 22.35 0.19 -4.51 16 27 C -0.03 -0.87 9.60 22.51 0.22 -0.66 16 28 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.16 2.79 7.64 -2.91 -0.02 2.76 16 36 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.43 7.69 8.83 -92.71 -0.82 6.88 16 38 H 0.41 12.70 8.56 -92.71 -0.79 11.91 16 39 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 40 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.12 4.26 6.42 -2.91 -0.02 4.25 16 44 H 0.15 3.37 7.60 -2.91 -0.02 3.35 16 Total: -1.00 -69.40 375.52 3.15 -66.25 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -0.58 Total: 28.51 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 5.75 Total: 16.24 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -3.79 Total: -100.86 kcal Atomic # 8 Polarization: -52.77 SS G_CDS: -0.27 Total: -53.04 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -69.40 3.15 -66.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155548116.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.011 kcal (2) G-P(sol) polarization free energy of solvation -69.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds