Wall clock time and date at job start Tue Mar 31 2020 12:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47544 * 2 1 4 4 O 1.45197 * 109.47570 * 180.02562 * 3 2 1 5 5 C 1.34750 * 117.00063 * 179.97438 * 4 3 2 6 6 O 1.21509 * 120.00207 * 0.02562 * 5 4 3 7 7 C 1.47452 * 119.99810 * 179.97438 * 5 4 3 8 8 C 1.39817 * 120.07203 * 180.02562 * 7 5 4 9 9 C 1.37639 * 119.91468 * 180.02562 * 8 7 5 10 10 C 1.39158 * 120.07937 * 359.97438 * 9 8 7 11 11 N 1.39406 * 119.91680 * 179.97438 * 10 9 8 12 12 C 1.34776 * 119.99531 * 143.93766 * 11 10 9 13 13 O 1.21584 * 120.00042 * 4.66456 * 12 11 10 14 14 N 1.34777 * 119.99999 * 184.65834 * 12 11 10 15 15 C 1.46495 * 120.00156 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.47398 * 35.00385 * 15 14 12 17 17 C 1.52997 * 109.47176 * 275.00181 * 15 14 12 18 18 C 1.50704 * 109.47039 * 155.00041 * 15 14 12 19 19 H 1.07999 * 119.99927 * 5.35018 * 18 15 14 20 20 C 1.37883 * 119.99898 * 185.34071 * 18 15 14 21 21 N 1.31516 * 119.99897 * 185.67309 * 20 18 15 22 22 Si 1.86800 * 119.99805 * 5.95323 * 20 18 15 23 23 H 1.48494 * 109.47164 * 269.72090 * 22 20 18 24 24 H 1.48497 * 109.47509 * 29.72356 * 22 20 18 25 25 H 1.48501 * 109.46797 * 149.72312 * 22 20 18 26 26 C 1.39151 * 120.15921 * 0.25634 * 10 9 8 27 27 C 1.37642 * 120.07856 * 359.48680 * 26 10 9 28 28 H 1.08999 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47018 * 299.99661 * 1 2 3 30 30 H 1.08995 * 109.47178 * 59.99931 * 1 2 3 31 31 H 1.09005 * 109.47064 * 239.99905 * 2 1 3 32 32 H 1.09000 * 109.47772 * 120.00473 * 2 1 3 33 33 H 1.08999 * 109.46686 * 60.00135 * 3 2 1 34 34 H 1.09000 * 109.46972 * 300.00963 * 3 2 1 35 35 H 1.07994 * 120.04454 * 359.97438 * 8 7 5 36 36 H 1.07999 * 119.96477 * 179.97438 * 9 8 7 37 37 H 0.96996 * 120.00350 * 323.92821 * 11 10 9 38 38 H 0.97000 * 119.99426 * 0.02562 * 14 12 11 39 39 H 1.09006 * 109.47068 * 174.86437 * 17 15 14 40 40 H 1.09001 * 109.47140 * 294.86531 * 17 15 14 41 41 H 1.09005 * 109.47319 * 54.86748 * 17 15 14 42 42 H 0.96996 * 119.99670 * 355.26039 * 21 20 18 43 43 H 1.08003 * 119.95960 * 179.72473 * 26 10 9 44 44 H 1.07998 * 120.04236 * 180.23374 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4921 1.4425 -0.0006 5 6 4.1038 2.6431 -0.0012 6 8 3.4421 3.6622 -0.0008 7 6 5.5763 2.7202 -0.0013 8 6 6.2127 3.9651 -0.0014 9 6 7.5874 4.0334 -0.0020 10 6 8.3437 2.8652 -0.0020 11 7 9.7358 2.9382 -0.0031 12 6 10.4586 2.0316 0.6839 13 8 9.9021 1.1013 1.2344 14 7 11.7985 2.1562 0.7606 15 6 12.5841 1.1711 1.5078 16 1 12.1316 0.1857 1.3970 17 6 12.6105 1.5566 2.9882 18 6 13.9922 1.1403 0.9715 19 1 14.2977 1.8484 0.2155 20 6 14.8904 0.2081 1.4462 21 7 16.1475 0.2511 1.0620 22 14 14.3202 -1.1206 2.6290 23 1 14.4715 -0.6385 4.0253 24 1 12.8934 -1.4377 2.3667 25 1 15.1424 -2.3419 2.4351 26 6 7.7136 1.6245 -0.0067 27 6 6.3393 1.5487 -0.0008 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 5.6264 4.8721 -0.0018 36 1 8.0798 4.9946 -0.0025 37 1 10.1842 3.6414 -0.4984 38 1 12.2424 2.8986 0.3216 39 1 13.1168 0.7771 3.5577 40 1 13.1442 2.4994 3.1087 41 1 11.5894 1.6679 3.3530 42 1 16.4283 0.8947 0.3929 43 1 8.3038 0.7200 -0.0112 44 1 5.8510 0.5854 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155548222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:01 Heat of formation + Delta-G solvation = -98.805613 kcal Electronic energy + Delta-G solvation = -25684.535090 eV Core-core repulsion = 21794.760353 eV Total energy + Delta-G solvation = -3889.774737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83283 -40.25236 -38.50022 -36.85711 -35.42856 -34.51290 -34.17426 -32.56125 -31.16648 -30.58795 -29.12838 -27.08532 -24.94220 -24.15428 -22.95048 -22.01377 -21.70141 -20.73523 -19.99210 -18.64298 -18.09570 -17.80965 -17.07066 -16.97586 -16.87551 -15.42977 -15.07641 -15.02730 -14.77730 -14.61855 -14.15207 -13.99794 -13.52576 -13.36036 -13.24639 -13.09108 -12.82129 -12.67121 -12.64912 -12.42473 -12.27410 -11.82364 -11.58908 -11.55590 -11.53440 -11.36862 -10.76591 -10.69593 -10.59710 -10.37235 -10.12066 -9.86429 -9.69490 -9.10894 -8.94814 -8.62415 -8.46638 -8.10116 -6.61990 -4.30548 0.56795 1.28918 2.38357 2.42089 2.88350 3.32344 3.42112 3.42774 3.55409 3.78225 4.36052 4.36392 4.48596 4.56337 4.59236 4.73181 4.83112 4.84846 5.02187 5.13038 5.15564 5.16793 5.20520 5.32004 5.45284 5.53502 5.63940 5.72040 5.87684 6.00658 6.17632 6.21060 6.23813 6.30040 6.37386 6.42927 6.54809 6.74738 6.90428 6.98112 7.24909 7.33699 7.59211 7.63848 8.16512 8.44929 8.64200 8.93641 9.40368 10.78945 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.002225 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.132298 B =12580.346653 C =13502.843137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.067 3.933 4 O -0.354 6.354 5 C 0.516 3.484 6 O -0.516 6.516 7 C -0.162 4.162 8 C -0.031 4.031 9 C -0.169 4.169 10 C 0.220 3.780 11 N -0.694 5.694 12 C 0.693 3.307 13 O -0.579 6.579 14 N -0.709 5.709 15 C 0.251 3.749 16 H 0.051 0.949 17 C -0.160 4.160 18 C -0.611 4.611 19 H 0.062 0.938 20 C 0.036 3.964 21 N -0.903 5.903 22 Si 1.050 2.950 23 H -0.281 1.281 24 H -0.273 1.273 25 H -0.287 1.287 26 C -0.137 4.137 27 C -0.039 4.039 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.407 0.593 38 H 0.392 0.608 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.034 0.966 42 H 0.269 0.731 43 H 0.152 0.848 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.004 4.870 -3.885 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.007 4.007 4 O -0.271 6.271 5 C 0.362 3.638 6 O -0.406 6.406 7 C -0.165 4.165 8 C -0.050 4.050 9 C -0.190 4.190 10 C 0.122 3.878 11 N -0.341 5.341 12 C 0.393 3.607 13 O -0.457 6.457 14 N -0.360 5.360 15 C 0.147 3.853 16 H 0.068 0.932 17 C -0.219 4.219 18 C -0.649 4.649 19 H 0.080 0.920 20 C -0.170 4.170 21 N -0.536 5.536 22 Si 0.879 3.121 23 H -0.208 1.208 24 H -0.199 1.199 25 H -0.213 1.213 26 C -0.158 4.158 27 C -0.058 4.058 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.156 0.844 36 H 0.152 0.848 37 H 0.243 0.757 38 H 0.224 0.776 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.169 0.831 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.032 2.980 -2.418 25.324 hybrid contribution -0.075 2.268 -1.360 2.646 sum -25.107 5.248 -3.778 25.926 Atomic orbital electron populations 1.21688 0.94157 1.02585 1.02295 1.21530 0.96109 0.94695 1.03963 1.23128 0.76273 0.98644 1.02640 1.86547 1.23337 1.32894 1.84291 1.21142 0.89126 0.81192 0.72307 1.90816 1.66957 1.36050 1.46807 1.18985 0.88672 0.95088 1.13707 1.20929 0.93621 0.96608 0.93881 1.20828 0.93371 0.97412 1.07404 1.17859 0.82347 0.93891 0.93683 1.42820 1.04287 1.33665 1.53306 1.16163 0.82711 0.82246 0.79562 1.90888 1.70288 1.32992 1.51495 1.45599 1.03380 1.31238 1.55756 1.19183 0.90903 0.87740 0.87431 0.93173 1.22427 0.99065 1.01355 0.99005 1.22141 0.95044 1.20582 1.27114 0.91980 1.25713 0.93287 0.98716 0.99274 1.70838 1.15422 1.37862 1.29511 0.83920 0.76040 0.76199 0.75932 1.20756 1.19881 1.21347 1.21419 0.94242 0.98210 1.01930 1.21339 0.93247 0.97827 0.93353 0.91606 0.92317 0.92334 0.90648 0.90604 0.91192 0.91216 0.84423 0.84777 0.75706 0.77551 0.92988 0.93121 0.94716 0.92126 0.83072 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.13 -0.81 6.31 -26.73 -0.17 -0.98 16 3 C 0.07 0.58 5.48 37.16 0.20 0.78 16 4 O -0.35 -3.96 9.46 -40.63 -0.38 -4.35 16 5 C 0.52 6.55 7.89 34.48 0.27 6.82 16 6 O -0.52 -7.46 16.13 -19.27 -0.31 -7.77 16 7 C -0.16 -1.99 5.88 -104.97 -0.62 -2.61 16 8 C -0.03 -0.35 9.58 -39.21 -0.38 -0.73 16 9 C -0.17 -1.84 9.95 -39.46 -0.39 -2.23 16 10 C 0.22 2.91 6.27 -83.73 -0.53 2.39 16 11 N -0.69 -9.32 5.31 -14.22 -0.08 -9.39 16 12 C 0.69 12.55 8.36 -86.92 -0.73 11.82 16 13 O -0.58 -12.42 13.49 5.29 0.07 -12.35 16 14 N -0.71 -13.45 5.07 -59.82 -0.30 -13.75 16 15 C 0.25 5.80 2.14 -69.08 -0.15 5.65 16 16 H 0.05 1.27 6.06 -51.93 -0.31 0.96 16 17 C -0.16 -3.48 9.08 37.16 0.34 -3.14 16 18 C -0.61 -15.99 9.09 -34.44 -0.31 -16.30 16 19 H 0.06 1.69 7.95 -52.49 -0.42 1.27 16 20 C 0.04 1.00 5.43 -17.82 -0.10 0.90 16 21 N -0.90 -26.49 13.70 55.43 0.76 -25.73 16 22 Si 1.05 24.84 25.32 -169.99 -4.30 20.54 16 23 H -0.28 -6.30 6.81 56.52 0.38 -5.92 16 24 H -0.27 -6.24 6.35 56.52 0.36 -5.88 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 C -0.14 -1.93 8.66 -39.46 -0.34 -2.28 16 27 C -0.04 -0.48 9.60 -39.21 -0.38 -0.85 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.14 1.38 7.64 -52.49 -0.40 0.98 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.41 4.05 8.84 -40.82 -0.36 3.69 16 38 H 0.39 6.42 8.55 -40.82 -0.35 6.07 16 39 H 0.05 1.14 4.46 -51.93 -0.23 0.91 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.27 7.79 8.72 -40.82 -0.36 7.43 16 43 H 0.15 2.42 6.30 -52.48 -0.33 2.09 16 44 H 0.14 1.49 7.60 -52.49 -0.40 1.09 16 LS Contribution 369.80 15.07 5.57 5.57 Total: -1.00 -32.30 369.80 -8.12 -40.41 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -6.24 Total: 7.94 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.90 Total: -1.12 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.38 Total: -48.88 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.62 Total: -24.47 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.30 Total: 20.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.30 -8.12 -40.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155548222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.392 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds