Wall clock time and date at job start Tue Mar 31 2020 12:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47544 * 2 1 4 4 O 1.45197 * 109.47570 * 180.02562 * 3 2 1 5 5 C 1.34750 * 117.00063 * 179.97438 * 4 3 2 6 6 O 1.21509 * 120.00207 * 0.02562 * 5 4 3 7 7 C 1.47452 * 119.99810 * 179.97438 * 5 4 3 8 8 C 1.39817 * 120.07203 * 180.02562 * 7 5 4 9 9 C 1.37639 * 119.91468 * 180.02562 * 8 7 5 10 10 C 1.39158 * 120.07937 * 359.97438 * 9 8 7 11 11 N 1.39406 * 119.91680 * 179.97438 * 10 9 8 12 12 C 1.34776 * 119.99531 * 143.93766 * 11 10 9 13 13 O 1.21584 * 120.00042 * 4.66456 * 12 11 10 14 14 N 1.34777 * 119.99999 * 184.65834 * 12 11 10 15 15 C 1.46495 * 120.00156 * 179.97438 * 14 12 11 16 16 H 1.08999 * 109.47398 * 35.00385 * 15 14 12 17 17 C 1.52997 * 109.47176 * 275.00181 * 15 14 12 18 18 C 1.50704 * 109.47039 * 155.00041 * 15 14 12 19 19 H 1.07999 * 119.99927 * 5.35018 * 18 15 14 20 20 C 1.37883 * 119.99898 * 185.34071 * 18 15 14 21 21 N 1.31516 * 119.99897 * 185.67309 * 20 18 15 22 22 Si 1.86800 * 119.99805 * 5.95323 * 20 18 15 23 23 H 1.48494 * 109.47164 * 269.72090 * 22 20 18 24 24 H 1.48497 * 109.47509 * 29.72356 * 22 20 18 25 25 H 1.48501 * 109.46797 * 149.72312 * 22 20 18 26 26 C 1.39151 * 120.15921 * 0.25634 * 10 9 8 27 27 C 1.37642 * 120.07856 * 359.48680 * 26 10 9 28 28 H 1.08999 * 109.47149 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47018 * 299.99661 * 1 2 3 30 30 H 1.08995 * 109.47178 * 59.99931 * 1 2 3 31 31 H 1.09005 * 109.47064 * 239.99905 * 2 1 3 32 32 H 1.09000 * 109.47772 * 120.00473 * 2 1 3 33 33 H 1.08999 * 109.46686 * 60.00135 * 3 2 1 34 34 H 1.09000 * 109.46972 * 300.00963 * 3 2 1 35 35 H 1.07994 * 120.04454 * 359.97438 * 8 7 5 36 36 H 1.07999 * 119.96477 * 179.97438 * 9 8 7 37 37 H 0.96996 * 120.00350 * 323.92821 * 11 10 9 38 38 H 0.97000 * 119.99426 * 0.02562 * 14 12 11 39 39 H 1.09006 * 109.47068 * 174.86437 * 17 15 14 40 40 H 1.09001 * 109.47140 * 294.86531 * 17 15 14 41 41 H 1.09005 * 109.47319 * 54.86748 * 17 15 14 42 42 H 0.96996 * 119.99670 * 355.26039 * 21 20 18 43 43 H 1.08003 * 119.95960 * 179.72473 * 26 10 9 44 44 H 1.07998 * 120.04236 * 180.23374 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4921 1.4425 -0.0006 5 6 4.1038 2.6431 -0.0012 6 8 3.4421 3.6622 -0.0008 7 6 5.5763 2.7202 -0.0013 8 6 6.2127 3.9651 -0.0014 9 6 7.5874 4.0334 -0.0020 10 6 8.3437 2.8652 -0.0020 11 7 9.7358 2.9382 -0.0031 12 6 10.4586 2.0316 0.6839 13 8 9.9021 1.1013 1.2344 14 7 11.7985 2.1562 0.7606 15 6 12.5841 1.1711 1.5078 16 1 12.1316 0.1857 1.3970 17 6 12.6105 1.5566 2.9882 18 6 13.9922 1.1403 0.9715 19 1 14.2977 1.8484 0.2155 20 6 14.8904 0.2081 1.4462 21 7 16.1475 0.2511 1.0620 22 14 14.3202 -1.1206 2.6290 23 1 14.4715 -0.6385 4.0253 24 1 12.8934 -1.4377 2.3667 25 1 15.1424 -2.3419 2.4351 26 6 7.7136 1.6245 -0.0067 27 6 6.3393 1.5487 -0.0008 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 5.6264 4.8721 -0.0018 36 1 8.0798 4.9946 -0.0025 37 1 10.1842 3.6414 -0.4984 38 1 12.2424 2.8986 0.3216 39 1 13.1168 0.7771 3.5577 40 1 13.1442 2.4994 3.1087 41 1 11.5894 1.6679 3.3530 42 1 16.4283 0.8947 0.3929 43 1 8.3038 0.7200 -0.0112 44 1 5.8510 0.5854 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155548222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:00 Heat of formation + Delta-G solvation = -119.230989 kcal Electronic energy + Delta-G solvation = -25685.420801 eV Core-core repulsion = 21794.760353 eV Total energy + Delta-G solvation = -3890.660448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90998 -41.40771 -39.64229 -37.79802 -37.03279 -35.83145 -34.78683 -34.48911 -32.13785 -32.01452 -30.47369 -27.75446 -26.87197 -25.24152 -23.93554 -23.17696 -22.48561 -21.91086 -21.55832 -20.25541 -19.22578 -19.03714 -18.51483 -18.00412 -17.69268 -16.83106 -16.53689 -15.98456 -15.74379 -15.64923 -15.43441 -15.12407 -14.97796 -14.56073 -14.52637 -14.23616 -14.08902 -13.84429 -13.70832 -13.47629 -13.42776 -13.34283 -13.06542 -12.47173 -12.39239 -12.15144 -12.09769 -11.97718 -11.70480 -11.68539 -11.52013 -11.46100 -11.15407 -10.94653 -10.68926 -10.06579 -10.04655 -9.26330 -8.78188 -6.47378 -0.43189 0.34815 1.35643 1.43920 1.53329 1.56626 1.64377 1.70339 2.07964 2.41490 2.75755 3.04595 3.25914 3.57872 3.81138 3.90700 3.90961 3.92660 4.22099 4.25759 4.31548 4.45342 4.51400 4.51630 4.54276 4.65305 4.73561 4.74936 4.93606 5.01243 5.04836 5.10725 5.16015 5.20344 5.22314 5.26761 5.37009 5.41036 5.44236 5.57868 5.58340 5.85965 5.98076 6.06994 6.50763 6.64156 7.05384 7.28144 7.51043 8.61749 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022250 B = 0.002225 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.132298 B =12580.346653 C =13502.843137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.060 3.940 4 O -0.357 6.357 5 C 0.518 3.482 6 O -0.537 6.537 7 C -0.167 4.167 8 C -0.030 4.030 9 C -0.150 4.150 10 C 0.202 3.798 11 N -0.674 5.674 12 C 0.695 3.305 13 O -0.614 6.614 14 N -0.709 5.709 15 C 0.256 3.744 16 H 0.029 0.971 17 C -0.153 4.153 18 C -0.602 4.602 19 H 0.043 0.957 20 C -0.010 4.010 21 N -0.935 5.935 22 Si 1.081 2.919 23 H -0.259 1.259 24 H -0.264 1.264 25 H -0.288 1.288 26 C -0.154 4.154 27 C -0.036 4.036 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.154 0.846 36 H 0.168 0.832 37 H 0.426 0.574 38 H 0.404 0.596 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.258 0.742 43 H 0.127 0.873 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.980 5.832 -3.508 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.013 4.013 4 O -0.274 6.274 5 C 0.365 3.635 6 O -0.428 6.428 7 C -0.169 4.169 8 C -0.048 4.048 9 C -0.171 4.171 10 C 0.105 3.895 11 N -0.323 5.323 12 C 0.396 3.604 13 O -0.493 6.493 14 N -0.361 5.361 15 C 0.150 3.850 16 H 0.047 0.953 17 C -0.212 4.212 18 C -0.641 4.641 19 H 0.062 0.938 20 C -0.210 4.210 21 N -0.570 5.570 22 Si 0.904 3.096 23 H -0.184 1.184 24 H -0.189 1.189 25 H -0.215 1.215 26 C -0.175 4.175 27 C -0.054 4.054 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.172 0.828 36 H 0.185 0.815 37 H 0.265 0.735 38 H 0.239 0.761 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.145 0.855 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -27.039 3.996 -2.077 27.412 hybrid contribution 0.403 2.020 -1.574 2.592 sum -26.636 6.016 -3.651 27.550 Atomic orbital electron populations 1.21690 0.92800 1.03370 1.02631 1.21545 0.97155 0.93137 1.04019 1.23396 0.74873 1.00232 1.02788 1.86548 1.24839 1.32190 1.83812 1.21204 0.89246 0.81282 0.71780 1.90803 1.67385 1.36701 1.47950 1.19139 0.88658 0.95559 1.13585 1.21183 0.93922 0.96774 0.92953 1.21067 0.92994 0.97803 1.05211 1.18042 0.82031 0.94499 0.94962 1.42452 1.04340 1.33004 1.52493 1.16174 0.82286 0.82416 0.79548 1.90874 1.70840 1.34624 1.53012 1.45254 1.03836 1.31027 1.56015 1.18832 0.89317 0.88039 0.88767 0.95283 1.22308 0.99756 1.01527 0.97568 1.22315 0.96577 1.19283 1.25889 0.93845 1.26840 0.93047 1.00545 1.00581 1.70938 1.16733 1.38636 1.30716 0.83534 0.76090 0.74277 0.75701 1.18382 1.18883 1.21487 1.21301 0.94817 0.97925 1.03453 1.21360 0.92587 0.98537 0.92954 0.90596 0.92076 0.91943 0.90479 0.90675 0.91178 0.90965 0.82837 0.81495 0.73511 0.76075 0.93243 0.92445 0.93725 0.93293 0.85492 0.83392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.50 16 2 C -0.12 -1.41 6.31 30.59 0.19 -1.22 16 3 C 0.06 0.99 5.48 71.98 0.39 1.38 16 4 O -0.36 -7.65 9.46 -56.60 -0.54 -8.18 16 5 C 0.52 12.50 7.89 70.25 0.55 13.05 16 6 O -0.54 -14.80 16.13 19.81 0.32 -14.48 16 7 C -0.17 -3.85 5.88 -20.09 -0.12 -3.97 16 8 C -0.03 -0.59 9.58 22.51 0.22 -0.37 16 9 C -0.15 -2.80 9.95 22.35 0.22 -2.58 16 10 C 0.20 4.97 6.27 38.38 0.24 5.21 16 11 N -0.67 -16.85 5.31 -317.16 -1.69 -18.54 16 12 C 0.70 24.45 8.36 179.05 1.50 25.95 16 13 O -0.61 -26.13 13.49 -3.98 -0.05 -26.18 16 14 N -0.71 -26.18 5.07 -461.42 -2.34 -28.52 16 15 C 0.26 11.64 2.14 44.25 0.09 11.73 16 16 H 0.03 1.47 6.06 -2.39 -0.01 1.46 16 17 C -0.15 -6.40 9.08 71.98 0.65 -5.75 16 18 C -0.60 -31.60 9.09 25.60 0.23 -31.37 16 19 H 0.04 2.39 7.95 -2.91 -0.02 2.37 16 20 C -0.01 -0.57 5.43 84.66 0.46 -0.11 16 21 N -0.93 -55.61 13.70 21.45 0.29 -55.31 16 22 Si 1.08 49.58 25.32 68.60 1.74 51.32 16 23 H -0.26 -10.89 6.81 99.48 0.68 -10.21 16 24 H -0.26 -11.63 6.35 99.48 0.63 -11.00 16 25 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 26 C -0.15 -4.26 8.66 22.35 0.19 -4.07 16 27 C -0.04 -0.85 9.60 22.51 0.22 -0.63 16 28 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.15 2.61 7.64 -2.91 -0.02 2.59 16 36 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 37 H 0.43 7.35 8.84 -92.71 -0.82 6.53 16 38 H 0.40 12.73 8.55 -92.71 -0.79 11.94 16 39 H 0.05 2.07 4.46 -2.38 -0.01 2.06 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 42 H 0.26 15.34 8.72 -92.71 -0.81 14.54 16 43 H 0.13 4.16 6.30 -2.91 -0.02 4.14 16 44 H 0.15 3.11 7.60 -2.91 -0.02 3.09 16 Total: -1.00 -69.59 369.80 2.78 -66.81 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -0.71 Total: 26.32 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.76 Total: 6.77 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -3.73 Total: -102.37 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.27 Total: -48.85 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.74 Total: 51.32 kcal Total: -69.59 2.78 -66.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155548222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.422 kcal (2) G-P(sol) polarization free energy of solvation -69.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds