Wall clock time and date at job start Tue Mar 31 2020 13:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.67710 * 2 1 4 4 C 1.53295 * 109.71271 * 120.53558 * 2 1 3 5 5 O 1.42964 * 109.21830 * 172.04445 * 4 2 1 6 6 C 1.42964 * 114.16621 * 297.41835 * 5 4 2 7 7 H 1.09003 * 109.51324 * 302.65422 * 6 5 4 8 8 C 1.52996 * 109.51185 * 182.56089 * 6 5 4 9 9 O 1.42898 * 109.47721 * 65.00022 * 8 6 5 10 10 C 1.52877 * 109.29813 * 62.45300 * 6 5 4 11 11 N 1.47154 * 109.67787 * 239.48382 * 2 1 3 12 12 C 1.34769 * 120.98293 * 9.67838 * 11 2 1 13 13 O 1.21583 * 120.00179 * 6.28191 * 12 11 2 14 14 N 1.34779 * 120.00073 * 186.28630 * 12 11 2 15 15 C 1.39238 * 120.00166 * 185.40481 * 14 12 11 16 16 C 1.39485 * 119.83485 * 210.35981 * 15 14 12 17 17 C 1.36376 * 120.17088 * 179.71815 * 16 15 14 18 18 C 1.40871 * 119.82361 * 0.53308 * 17 16 15 19 19 C 1.41158 * 120.16093 * 179.75851 * 18 17 16 20 20 H 1.07996 * 120.00105 * 214.29737 * 19 18 17 21 21 C 1.39898 * 119.99854 * 34.30255 * 19 18 17 22 22 N 1.30876 * 119.99723 * 356.93185 * 21 19 18 23 23 Si 1.86792 * 120.00139 * 176.93036 * 21 19 18 24 24 H 1.48499 * 109.47138 * 89.99867 * 23 21 19 25 25 H 1.48503 * 109.47249 * 209.99881 * 23 21 19 26 26 H 1.48504 * 109.47184 * 329.99763 * 23 21 19 27 27 C 1.40867 * 119.67609 * 359.74890 * 18 17 16 28 28 C 1.36374 * 119.82758 * 359.97438 * 27 18 17 29 29 H 1.08994 * 109.47032 * 171.65598 * 1 2 3 30 30 H 1.09007 * 109.46645 * 291.64982 * 1 2 3 31 31 H 1.08996 * 109.47608 * 51.64962 * 1 2 3 32 32 H 1.09003 * 109.51152 * 291.96277 * 4 2 1 33 33 H 1.08999 * 109.51256 * 52.12264 * 4 2 1 34 34 H 1.08999 * 109.47178 * 185.00172 * 8 6 5 35 35 H 1.09008 * 109.47162 * 304.99714 * 8 6 5 36 36 H 0.96695 * 114.00404 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.61776 * 188.11681 * 10 6 5 38 38 H 1.08993 * 109.52547 * 67.70124 * 10 6 5 39 39 H 0.97001 * 119.99573 * 5.13223 * 14 12 11 40 40 H 1.08001 * 119.91371 * 0.02562 * 16 15 14 41 41 H 1.08001 * 120.08897 * 180.30065 * 17 16 15 42 42 H 0.96996 * 120.00321 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.08747 * 180.02562 * 27 18 17 44 44 H 1.07995 * 119.91967 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0471 -0.7332 1.2430 5 8 3.4644 -0.8901 1.1412 6 6 3.8869 -1.6882 0.0328 7 1 3.4226 -2.6724 0.0949 8 6 5.4091 -1.8387 0.0622 9 8 5.7928 -2.5747 1.2254 10 6 3.4631 -1.0089 -1.2695 11 7 2.0255 -0.7036 -1.1937 12 6 1.1867 -1.0627 -2.1855 13 8 0.0243 -0.7073 -2.1571 14 7 1.6363 -1.8159 -3.2087 15 6 0.8020 -2.0928 -4.2885 16 6 0.9502 -3.2886 -4.9912 17 6 0.1329 -3.5694 -6.0462 18 6 -0.8554 -2.6431 -6.4328 19 6 -1.7018 -2.9242 -7.5270 20 1 -2.0393 -2.1235 -8.1683 21 6 -2.1034 -4.2401 -7.7806 22 7 -1.6467 -5.2178 -7.0401 23 14 -3.2915 -4.6015 -9.1759 24 1 -2.5271 -4.8576 -10.4231 25 1 -4.1027 -5.7986 -8.8379 26 1 -4.1893 -3.4357 -9.3761 27 6 -0.9951 -1.4349 -5.7220 28 6 -0.1742 -1.1707 -4.6656 29 1 -0.3633 -1.0167 -0.1491 30 1 -0.3633 0.3792 0.9553 31 1 -0.3634 0.6376 -0.8059 32 1 1.8082 -0.1525 2.1339 33 1 1.5761 -1.7139 1.3094 34 1 5.7389 -2.3712 -0.8299 35 1 5.8714 -0.8518 0.0879 36 1 6.7468 -2.7083 1.3095 37 1 3.6525 -1.6773 -2.1094 38 1 4.0280 -0.0859 -1.3995 39 1 2.5425 -2.1617 -3.1948 40 1 1.7108 -3.9962 -4.6958 41 1 0.2457 -4.4979 -6.5863 42 1 -1.9249 -6.1302 -7.2161 43 1 -1.7509 -0.7202 -6.0124 44 1 -0.2803 -0.2451 -4.1194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157098028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:29 Heat of formation + Delta-G solvation = -71.876501 kcal Electronic energy + Delta-G solvation = -27175.099612 eV Core-core repulsion = 23286.492609 eV Total energy + Delta-G solvation = -3888.607003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.85198 -39.02245 -37.50377 -36.80324 -34.92281 -34.69875 -33.38435 -32.46810 -30.05454 -29.49690 -28.58607 -26.54667 -25.40950 -24.89078 -22.67306 -21.87888 -21.29971 -20.52872 -19.33622 -17.95659 -17.64250 -17.26543 -17.03697 -16.50841 -15.98027 -15.35844 -15.26099 -15.08844 -14.88257 -14.31450 -14.13669 -13.97555 -13.66323 -13.27873 -12.83872 -12.68631 -12.62717 -12.32097 -12.06335 -11.95911 -11.71216 -11.53100 -11.32196 -11.25263 -11.14000 -11.00784 -10.94612 -10.69121 -10.47543 -10.25579 -9.89525 -9.44652 -9.42134 -9.02532 -8.77487 -8.51981 -7.53184 -6.80101 -6.59502 -4.30839 2.58815 2.71493 3.09209 3.10358 3.12538 3.16969 3.37194 3.60865 3.74875 3.99639 4.13525 4.51272 4.68338 4.71199 4.74738 4.85098 4.91921 4.94423 5.09888 5.15581 5.21119 5.43851 5.53019 5.62328 5.67151 5.75406 6.15342 6.19121 6.27359 6.40971 6.65786 6.78602 6.80624 6.88459 7.03609 7.14022 7.25777 7.27529 7.36923 7.65976 7.84455 7.94684 8.09655 8.31654 8.39569 8.65560 8.91422 8.95396 9.06508 10.31919 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.002757 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.124220 B =10154.011261 C =10900.794838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.129 3.871 3 H 0.076 0.924 4 C 0.050 3.950 5 O -0.369 6.369 6 C 0.077 3.923 7 H 0.071 0.929 8 C 0.086 3.914 9 O -0.565 6.565 10 C 0.087 3.913 11 N -0.635 5.635 12 C 0.701 3.299 13 O -0.562 6.562 14 N -0.667 5.667 15 C 0.025 3.975 16 C -0.126 4.126 17 C -0.138 4.138 18 C 0.097 3.903 19 C -0.461 4.461 20 H 0.075 0.925 21 C 0.069 3.931 22 N -0.813 5.813 23 Si 0.915 3.085 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.202 4.202 28 C -0.089 4.089 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.381 0.619 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.388 0.612 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.277 0.723 43 H 0.095 0.905 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.518 5.369 12.754 19.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.026 3.974 3 H 0.094 0.906 4 C -0.027 4.027 5 O -0.287 6.287 6 C 0.017 3.983 7 H 0.089 0.911 8 C 0.008 3.992 9 O -0.370 6.370 10 C -0.037 4.037 11 N -0.375 5.375 12 C 0.404 3.596 13 O -0.439 6.439 14 N -0.315 5.315 15 C -0.067 4.067 16 C -0.146 4.146 17 C -0.158 4.158 18 C 0.094 3.906 19 C -0.492 4.492 20 H 0.093 0.907 21 C -0.145 4.145 22 N -0.441 5.441 23 Si 0.740 3.260 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.188 1.188 27 C -0.222 4.222 28 C -0.109 4.109 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.124 0.876 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.228 0.772 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.224 0.776 40 H 0.107 0.893 41 H 0.149 0.851 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.095 5.475 13.013 18.591 hybrid contribution 0.400 -0.642 -0.796 1.098 sum 12.495 4.833 12.217 18.131 Atomic orbital electron populations 1.22101 0.91548 1.04730 1.01079 1.21778 0.96837 0.95336 0.83484 0.90627 1.23164 0.81167 1.00537 0.97877 1.87991 1.22002 1.71424 1.47284 1.22378 0.94404 0.94847 0.86630 0.91103 1.22079 0.92857 0.95947 0.88361 1.86538 1.28603 1.76953 1.44914 1.22049 0.82740 1.01154 0.97802 1.47357 1.06607 1.62827 1.20739 1.15887 0.84463 0.79993 0.79307 1.90944 1.15860 1.59608 1.77493 1.42430 1.15839 1.53713 1.19474 1.17091 1.00124 0.96873 0.92626 1.20238 1.01356 0.93917 0.99114 1.21147 0.94790 1.01598 0.98293 1.17702 0.90268 0.90735 0.91855 1.19479 1.25899 0.93101 1.10761 0.90693 1.25862 0.96400 0.95923 0.96355 1.69761 1.38167 1.00810 1.35343 0.86211 0.80326 0.78637 0.80867 1.19570 1.20353 1.18768 1.20791 1.02350 1.00525 0.98529 1.20345 0.96167 0.97683 0.96706 0.91354 0.93675 0.89529 0.87587 0.92497 0.91693 0.92417 0.77247 0.89293 0.90368 0.77647 0.89267 0.85110 0.91211 0.88649 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.65 37.16 0.28 -1.58 16 2 C 0.13 1.59 3.68 -67.42 -0.25 1.34 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.05 0.54 6.28 37.31 0.23 0.78 16 5 O -0.37 -4.37 10.35 -39.97 -0.41 -4.78 16 6 C 0.08 0.78 3.04 -26.80 -0.08 0.70 16 7 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 8 C 0.09 0.66 6.71 37.16 0.25 0.91 16 9 O -0.56 -5.01 13.63 -39.97 -0.54 -5.55 16 10 C 0.09 0.88 5.91 -3.75 -0.02 0.86 16 11 N -0.63 -8.66 3.03 -170.68 -0.52 -9.18 16 12 C 0.70 12.45 7.82 -86.92 -0.68 11.77 16 13 O -0.56 -11.82 9.61 5.29 0.05 -11.77 16 14 N -0.67 -11.83 5.22 -14.10 -0.07 -11.91 16 15 C 0.03 0.56 6.34 -83.57 -0.53 0.03 16 16 C -0.13 -2.86 9.89 -39.79 -0.39 -3.25 16 17 C -0.14 -3.55 8.61 -39.26 -0.34 -3.89 16 18 C 0.10 2.60 5.55 -106.80 -0.59 2.01 16 19 C -0.46 -12.36 9.03 -37.85 -0.34 -12.70 16 20 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 21 C 0.07 1.76 5.41 -17.34 -0.09 1.67 16 22 N -0.81 -21.27 10.60 55.55 0.59 -20.68 16 23 Si 0.91 19.12 29.56 -169.99 -5.02 14.09 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 27 C -0.20 -5.12 9.74 -39.26 -0.38 -5.51 16 28 C -0.09 -2.12 8.59 -39.79 -0.34 -2.47 16 29 H 0.07 1.10 6.99 -51.93 -0.36 0.74 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 1.38 6.60 -51.93 -0.34 1.04 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 36 H 0.38 1.45 9.12 45.56 0.42 1.86 16 37 H 0.09 0.78 5.65 -51.93 -0.29 0.49 16 38 H 0.08 0.70 8.13 -51.93 -0.42 0.27 16 39 H 0.39 5.49 6.34 -40.82 -0.26 5.23 16 40 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.13 3.47 6.14 -52.49 -0.32 3.15 16 42 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 43 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 44 H 0.11 2.54 6.18 -52.49 -0.32 2.21 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -32.59 351.98 -9.17 -41.76 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.26 Total: 12.03 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -3.28 Total: -9.33 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.00 Total: -41.76 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.91 Total: -22.10 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.59 -9.17 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157098028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.117 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds