Wall clock time and date at job start Tue Mar 31 2020 13:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.67710 * 2 1 4 4 C 1.53295 * 109.71271 * 120.53558 * 2 1 3 5 5 O 1.42964 * 109.21830 * 172.04445 * 4 2 1 6 6 C 1.42964 * 114.16621 * 297.41835 * 5 4 2 7 7 H 1.09003 * 109.51324 * 302.65422 * 6 5 4 8 8 C 1.52996 * 109.51185 * 182.56089 * 6 5 4 9 9 O 1.42898 * 109.47721 * 65.00022 * 8 6 5 10 10 C 1.52877 * 109.29813 * 62.45300 * 6 5 4 11 11 N 1.47154 * 109.67787 * 239.48382 * 2 1 3 12 12 C 1.34769 * 120.98293 * 9.67838 * 11 2 1 13 13 O 1.21583 * 120.00179 * 6.28191 * 12 11 2 14 14 N 1.34779 * 120.00073 * 186.28630 * 12 11 2 15 15 C 1.39238 * 120.00166 * 185.40481 * 14 12 11 16 16 C 1.39485 * 119.83485 * 210.35981 * 15 14 12 17 17 C 1.36376 * 120.17088 * 179.71815 * 16 15 14 18 18 C 1.40871 * 119.82361 * 0.53308 * 17 16 15 19 19 C 1.41158 * 120.16093 * 179.75851 * 18 17 16 20 20 H 1.07996 * 120.00105 * 214.29737 * 19 18 17 21 21 C 1.39898 * 119.99854 * 34.30255 * 19 18 17 22 22 N 1.30876 * 119.99723 * 356.93185 * 21 19 18 23 23 Si 1.86792 * 120.00139 * 176.93036 * 21 19 18 24 24 H 1.48499 * 109.47138 * 89.99867 * 23 21 19 25 25 H 1.48503 * 109.47249 * 209.99881 * 23 21 19 26 26 H 1.48504 * 109.47184 * 329.99763 * 23 21 19 27 27 C 1.40867 * 119.67609 * 359.74890 * 18 17 16 28 28 C 1.36374 * 119.82758 * 359.97438 * 27 18 17 29 29 H 1.08994 * 109.47032 * 171.65598 * 1 2 3 30 30 H 1.09007 * 109.46645 * 291.64982 * 1 2 3 31 31 H 1.08996 * 109.47608 * 51.64962 * 1 2 3 32 32 H 1.09003 * 109.51152 * 291.96277 * 4 2 1 33 33 H 1.08999 * 109.51256 * 52.12264 * 4 2 1 34 34 H 1.08999 * 109.47178 * 185.00172 * 8 6 5 35 35 H 1.09008 * 109.47162 * 304.99714 * 8 6 5 36 36 H 0.96695 * 114.00404 * 180.02562 * 9 8 6 37 37 H 1.08999 * 109.61776 * 188.11681 * 10 6 5 38 38 H 1.08993 * 109.52547 * 67.70124 * 10 6 5 39 39 H 0.97001 * 119.99573 * 5.13223 * 14 12 11 40 40 H 1.08001 * 119.91371 * 0.02562 * 16 15 14 41 41 H 1.08001 * 120.08897 * 180.30065 * 17 16 15 42 42 H 0.96996 * 120.00321 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.08747 * 180.02562 * 27 18 17 44 44 H 1.07995 * 119.91967 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0471 -0.7332 1.2430 5 8 3.4644 -0.8901 1.1412 6 6 3.8869 -1.6882 0.0328 7 1 3.4226 -2.6724 0.0949 8 6 5.4091 -1.8387 0.0622 9 8 5.7928 -2.5747 1.2254 10 6 3.4631 -1.0089 -1.2695 11 7 2.0255 -0.7036 -1.1937 12 6 1.1867 -1.0627 -2.1855 13 8 0.0243 -0.7073 -2.1571 14 7 1.6363 -1.8159 -3.2087 15 6 0.8020 -2.0928 -4.2885 16 6 0.9502 -3.2886 -4.9912 17 6 0.1329 -3.5694 -6.0462 18 6 -0.8554 -2.6431 -6.4328 19 6 -1.7018 -2.9242 -7.5270 20 1 -2.0393 -2.1235 -8.1683 21 6 -2.1034 -4.2401 -7.7806 22 7 -1.6467 -5.2178 -7.0401 23 14 -3.2915 -4.6015 -9.1759 24 1 -2.5271 -4.8576 -10.4231 25 1 -4.1027 -5.7986 -8.8379 26 1 -4.1893 -3.4357 -9.3761 27 6 -0.9951 -1.4349 -5.7220 28 6 -0.1742 -1.1707 -4.6656 29 1 -0.3633 -1.0167 -0.1491 30 1 -0.3633 0.3792 0.9553 31 1 -0.3634 0.6376 -0.8059 32 1 1.8082 -0.1525 2.1339 33 1 1.5761 -1.7139 1.3094 34 1 5.7389 -2.3712 -0.8299 35 1 5.8714 -0.8518 0.0879 36 1 6.7468 -2.7083 1.3095 37 1 3.6525 -1.6773 -2.1094 38 1 4.0280 -0.0859 -1.3995 39 1 2.5425 -2.1617 -3.1948 40 1 1.7108 -3.9962 -4.6958 41 1 0.2457 -4.4979 -6.5863 42 1 -1.9249 -6.1302 -7.2161 43 1 -1.7509 -0.7202 -6.0124 44 1 -0.2803 -0.2451 -4.1194 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157098028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:28 Heat of formation + Delta-G solvation = -95.206169 kcal Electronic energy + Delta-G solvation = -27176.111263 eV Core-core repulsion = 23286.492609 eV Total energy + Delta-G solvation = -3889.618653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.07613 -40.24690 -39.08088 -37.55796 -36.42801 -35.90096 -34.95542 -33.71901 -31.51673 -31.13339 -30.20884 -27.55826 -26.75233 -26.13786 -23.96621 -23.26792 -22.59801 -22.15069 -20.72769 -19.28718 -18.99759 -18.51887 -18.03431 -17.72429 -17.12994 -17.03472 -16.35206 -16.03668 -15.96436 -15.77749 -15.46625 -15.22708 -14.87327 -14.52040 -14.42993 -14.00432 -13.95265 -13.64382 -13.55006 -13.33816 -13.21928 -12.94834 -12.80585 -12.76771 -12.42069 -12.39619 -12.11235 -11.86764 -11.68568 -11.35903 -11.31505 -11.21143 -10.92514 -10.75080 -10.29232 -9.61870 -9.44735 -8.65273 -8.48391 -6.29821 0.85071 1.15078 1.39939 1.43827 1.50095 1.54723 2.13400 2.25332 2.61401 2.79783 2.84137 3.18153 3.67309 3.70162 3.86839 3.93994 3.98800 4.16274 4.17226 4.29724 4.38589 4.49412 4.52398 4.53100 4.57164 4.69042 4.76504 4.86507 4.92424 5.05692 5.08563 5.14981 5.26278 5.34301 5.44471 5.59290 5.65268 5.76766 6.03923 6.05204 6.07370 6.18309 6.41011 6.69804 6.92855 6.95560 6.99119 7.02873 7.58472 8.44224 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.002757 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.124220 B =10154.011261 C =10900.794838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.127 3.873 3 H 0.092 0.908 4 C 0.056 3.944 5 O -0.379 6.379 6 C 0.074 3.926 7 H 0.054 0.946 8 C 0.087 3.913 9 O -0.591 6.591 10 C 0.084 3.916 11 N -0.629 5.629 12 C 0.697 3.303 13 O -0.600 6.600 14 N -0.661 5.661 15 C 0.046 3.954 16 C -0.124 4.124 17 C -0.155 4.155 18 C 0.065 3.935 19 C -0.498 4.498 20 H 0.071 0.929 21 C 0.027 3.973 22 N -0.843 5.843 23 Si 0.987 3.013 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.264 1.264 27 C -0.217 4.217 28 C -0.098 4.098 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.132 0.868 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.401 0.599 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.408 0.592 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.284 0.716 43 H 0.095 0.905 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.424 5.467 13.762 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.024 3.976 3 H 0.110 0.890 4 C -0.021 4.021 5 O -0.297 6.297 6 C 0.015 3.985 7 H 0.072 0.928 8 C 0.009 3.991 9 O -0.400 6.400 10 C -0.039 4.039 11 N -0.368 5.368 12 C 0.400 3.600 13 O -0.479 6.479 14 N -0.310 5.310 15 C -0.049 4.049 16 C -0.144 4.144 17 C -0.175 4.175 18 C 0.062 3.938 19 C -0.529 4.529 20 H 0.089 0.911 21 C -0.184 4.184 22 N -0.471 5.471 23 Si 0.808 3.192 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.188 1.188 27 C -0.237 4.237 28 C -0.119 4.119 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.251 0.749 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.247 0.753 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.095 5.583 14.071 20.683 hybrid contribution -0.066 -0.601 -0.911 1.094 sum 14.029 4.981 13.159 19.869 Atomic orbital electron populations 1.21912 0.92775 1.02250 1.01621 1.21951 0.95854 0.96304 0.83504 0.88988 1.23166 0.80884 1.00140 0.97934 1.87994 1.22131 1.71581 1.48016 1.22502 0.96296 0.93700 0.86039 0.92819 1.22146 0.90817 0.97042 0.89070 1.86471 1.30794 1.77205 1.45565 1.22317 0.80429 1.02637 0.98505 1.47393 1.07788 1.61762 1.19868 1.16070 0.84460 0.79645 0.79874 1.90945 1.17795 1.60719 1.78444 1.42222 1.16324 1.53995 1.18509 1.17097 0.99207 0.95777 0.92777 1.20470 1.01371 0.94529 0.98053 1.21125 0.95605 1.01178 0.99561 1.18005 0.91264 0.91678 0.92834 1.19703 1.27421 0.94092 1.11695 0.91054 1.26708 0.97768 0.95188 0.98744 1.69826 1.39238 1.01314 1.36707 0.85122 0.77930 0.78396 0.77723 1.18382 1.19507 1.18764 1.20908 1.03048 1.00469 0.99245 1.20432 0.96782 0.98286 0.96364 0.94401 0.90652 0.92259 0.85054 0.93653 0.89111 0.91105 0.74868 0.87828 0.88194 0.75280 0.85917 0.86380 0.90565 0.88728 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 7.65 71.98 0.55 -2.88 16 2 C 0.13 2.88 3.68 44.97 0.17 3.04 16 3 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 4 C 0.06 1.10 6.28 72.08 0.45 1.55 16 5 O -0.38 -7.97 10.35 -144.45 -1.50 -9.47 16 6 C 0.07 1.31 3.04 30.55 0.09 1.40 16 7 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 8 C 0.09 1.04 6.71 71.98 0.48 1.52 16 9 O -0.59 -8.92 13.63 -144.45 -1.97 -10.89 16 10 C 0.08 1.45 5.91 86.21 0.51 1.96 16 11 N -0.63 -16.02 3.03 -812.19 -2.46 -18.47 16 12 C 0.70 24.13 7.82 179.06 1.40 25.53 16 13 O -0.60 -25.48 9.61 -3.98 -0.04 -25.52 16 14 N -0.66 -22.40 5.22 -316.78 -1.65 -24.06 16 15 C 0.05 1.99 6.34 38.57 0.24 2.24 16 16 C -0.12 -5.55 9.89 22.14 0.22 -5.33 16 17 C -0.15 -8.10 8.61 22.48 0.19 -7.91 16 18 C 0.06 3.59 5.55 -21.27 -0.12 3.48 16 19 C -0.50 -27.67 9.03 23.39 0.21 -27.45 16 20 H 0.07 3.84 7.85 -2.91 -0.02 3.81 16 21 C 0.03 1.42 5.41 85.24 0.46 1.88 16 22 N -0.84 -44.92 10.60 21.82 0.23 -44.68 16 23 Si 0.99 39.58 29.56 68.60 2.03 41.61 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 26 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 27 C -0.22 -11.41 9.74 22.48 0.22 -11.19 16 28 C -0.10 -4.78 8.59 22.13 0.19 -4.59 16 29 H 0.04 1.23 6.99 -2.39 -0.02 1.21 16 30 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.06 1.92 6.60 -2.39 -0.02 1.90 16 32 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.40 1.97 9.12 -74.06 -0.68 1.30 16 37 H 0.10 1.46 5.65 -2.39 -0.01 1.44 16 38 H 0.10 1.38 8.13 -2.39 -0.02 1.36 16 39 H 0.41 10.41 6.34 -92.71 -0.59 9.83 16 40 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.12 6.44 6.14 -2.91 -0.02 6.42 16 42 H 0.28 13.75 8.30 -92.71 -0.77 12.99 16 43 H 0.09 4.81 8.06 -2.91 -0.02 4.79 16 44 H 0.11 5.18 6.18 -2.91 -0.02 5.16 16 Total: -1.00 -73.22 351.98 -0.30 -73.52 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: -0.22 Total: 34.71 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 5.27 Total: -16.74 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -3.88 Total: -87.21 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -3.50 Total: -45.89 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -73.22 -0.30 -73.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157098028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.685 kcal (2) G-P(sol) polarization free energy of solvation -73.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds