Wall clock time and date at job start Tue Mar 31 2020 13:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46811 * 2 1 4 4 C 1.50695 * 109.47476 * 240.00313 * 2 1 3 5 5 H 1.07996 * 120.00106 * 273.14479 * 4 2 1 6 6 C 1.37880 * 120.00244 * 93.14626 * 4 2 1 7 7 N 1.31517 * 120.00047 * 178.81379 * 6 4 2 8 8 Si 1.86796 * 119.99787 * 358.80647 * 6 4 2 9 9 H 1.48500 * 109.47150 * 86.88780 * 8 6 4 10 10 H 1.48505 * 109.47013 * 206.88798 * 8 6 4 11 11 H 1.48501 * 109.47413 * 326.88892 * 8 6 4 12 12 N 1.46503 * 109.47086 * 119.99928 * 2 1 3 13 13 C 1.34774 * 120.00097 * 274.72624 * 12 2 1 14 14 O 1.21594 * 120.00164 * 0.27821 * 13 12 2 15 15 N 1.34769 * 120.00425 * 180.27393 * 13 12 2 16 16 C 1.40148 * 120.00504 * 174.82284 * 15 13 12 17 17 C 1.38837 * 120.01280 * 325.71583 * 16 15 13 18 18 C 1.38096 * 119.98450 * 179.72481 * 17 16 15 19 19 C 1.38708 * 120.01531 * 0.54798 * 18 17 16 20 20 O 1.35977 * 119.99019 * 179.70471 * 19 18 17 21 21 C 1.42897 * 117.00266 * 175.15503 * 20 19 18 22 22 H 1.08998 * 110.45687 * 326.32271 * 21 20 19 23 23 C 1.54516 * 110.50909 * 203.72215 * 21 20 19 24 24 C 1.54478 * 104.06053 * 241.35359 * 23 21 20 25 25 O 1.44422 * 104.80332 * 23.98155 * 24 23 21 26 26 C 1.44427 * 105.27351 * 319.48440 * 25 24 23 27 27 C 1.38723 * 120.02841 * 359.72616 * 19 18 17 28 28 C 1.38098 * 120.01267 * 0.02562 * 27 19 18 29 29 H 1.09002 * 109.46931 * 184.82097 * 1 2 3 30 30 H 1.09005 * 109.47768 * 304.82484 * 1 2 3 31 31 H 1.09006 * 109.47367 * 64.82706 * 1 2 3 32 32 H 0.96997 * 120.00073 * 180.02562 * 7 6 4 33 33 H 0.96998 * 119.99918 * 95.00448 * 12 2 1 34 34 H 0.97011 * 119.99858 * 354.82382 * 15 13 12 35 35 H 1.07999 * 120.00277 * 359.97295 * 17 16 15 36 36 H 1.08005 * 119.99228 * 180.30211 * 18 17 16 37 37 H 1.08997 * 110.51042 * 0.02562 * 23 21 20 38 38 H 1.08994 * 110.51070 * 122.70575 * 23 21 20 39 39 H 1.09000 * 110.37241 * 142.80819 * 24 23 21 40 40 H 1.09003 * 110.37224 * 265.03302 * 24 23 21 41 41 H 1.08997 * 110.37616 * 281.68291 * 26 25 24 42 42 H 1.09003 * 110.36734 * 159.34843 * 26 25 24 43 43 H 1.07998 * 119.99452 * 179.97438 * 27 19 18 44 44 H 1.07991 * 120.00583 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.1640 -1.7821 -1.2193 6 6 2.3240 0.0082 -2.3705 7 7 2.7846 -0.6087 -3.4368 8 14 2.0647 1.8578 -2.4006 9 1 3.2794 2.5365 -1.8819 10 1 1.8086 2.2991 -3.7953 11 1 0.9000 2.2084 -1.5487 12 7 2.0183 -0.6906 1.1962 13 6 2.1522 -0.0169 2.3558 14 8 1.8630 1.1628 2.4105 15 7 2.6067 -0.6508 3.4548 16 6 2.8491 0.0719 4.6308 17 6 3.3192 1.3764 4.5599 18 6 3.5525 2.0899 5.7189 19 6 3.3281 1.4999 6.9540 20 8 3.5637 2.2010 8.0951 21 6 3.2109 1.5709 9.3282 22 1 2.3268 0.9469 9.1979 23 6 2.9691 2.6297 10.4273 24 6 4.0337 2.3076 11.4994 25 8 5.0789 1.6133 10.7845 26 6 4.3929 0.7346 9.8663 27 6 2.8638 0.1946 7.0258 28 6 2.6252 -0.5183 5.8674 29 1 -0.3633 -1.0241 0.0864 30 1 -0.3635 0.5869 0.8436 31 1 -0.3634 0.4371 -0.9301 32 1 2.9901 -0.1032 -4.2387 33 1 2.2490 -1.6317 1.1526 34 1 2.7660 -1.6075 3.4319 35 1 3.4985 1.8342 3.5983 36 1 3.9135 3.1064 5.6638 37 1 3.1182 3.6336 10.0299 38 1 1.9663 2.5275 10.8420 39 1 4.4206 3.2273 11.9382 40 1 3.6109 1.6672 12.2735 41 1 4.0259 -0.1487 10.3888 42 1 5.0559 0.4458 9.0506 43 1 2.6897 -0.2644 7.9877 44 1 2.2642 -1.5345 5.9233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160708902.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:19 Heat of formation + Delta-G solvation = -78.841772 kcal Electronic energy + Delta-G solvation = -26148.744899 eV Core-core repulsion = 22259.835859 eV Total energy + Delta-G solvation = -3888.909040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.82696 -40.02596 -38.82411 -37.20703 -35.04754 -34.03338 -32.38941 -31.98501 -31.04888 -29.98727 -29.23207 -27.96890 -25.30435 -23.86824 -23.26442 -22.52790 -21.62613 -20.67494 -19.86127 -18.58914 -18.39089 -17.40640 -16.96243 -16.69915 -16.37803 -15.85172 -15.31855 -15.04052 -14.84333 -14.83555 -14.22678 -14.07831 -13.54558 -13.44692 -13.26433 -13.11472 -12.83278 -12.59604 -12.51905 -12.37077 -12.24434 -11.98997 -11.63083 -11.54181 -11.26503 -11.19062 -10.84518 -10.80472 -10.51617 -10.25124 -9.92263 -9.74061 -9.55662 -9.19421 -8.97563 -8.77227 -8.19899 -7.56677 -6.25540 -4.29543 1.32387 1.39748 2.89501 3.11014 3.27918 3.33897 3.41218 3.45472 3.54933 3.93493 4.01395 4.31056 4.31254 4.44526 4.58920 4.71136 4.75942 4.79672 4.85058 4.95337 5.16824 5.18019 5.25062 5.27498 5.33141 5.40885 5.52548 5.64305 5.95456 5.95723 6.22290 6.27490 6.29261 6.39247 6.52109 6.58748 6.66636 6.86120 6.99820 7.09305 7.30949 7.35386 7.47998 7.53749 8.22780 8.63522 8.76050 9.10306 9.36455 10.86017 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.033877 B = 0.002209 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.321718 B =12673.536897 C =12935.255927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.249 3.751 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.258 1.258 12 N -0.714 5.714 13 C 0.692 3.308 14 O -0.588 6.588 15 N -0.695 5.695 16 C 0.149 3.851 17 C -0.080 4.080 18 C -0.127 4.127 19 C 0.098 3.902 20 O -0.302 6.302 21 C 0.051 3.949 22 H 0.090 0.910 23 C -0.153 4.153 24 C 0.044 3.956 25 O -0.368 6.368 26 C 0.024 3.976 27 C -0.191 4.191 28 C -0.116 4.116 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.055 0.945 32 H 0.268 0.732 33 H 0.391 0.609 34 H 0.403 0.597 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 0.813 27.792 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.146 3.854 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.183 1.183 12 N -0.366 5.366 13 C 0.393 3.607 14 O -0.466 6.466 15 N -0.343 5.343 16 C 0.053 3.947 17 C -0.100 4.100 18 C -0.146 4.146 19 C 0.053 3.947 20 O -0.216 6.216 21 C -0.006 4.006 22 H 0.108 0.892 23 C -0.190 4.190 24 C -0.033 4.033 25 O -0.286 6.286 26 C -0.053 4.053 27 C -0.210 4.210 28 C -0.137 4.137 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.224 0.776 34 H 0.238 0.762 35 H 0.163 0.837 36 H 0.149 0.851 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.120 0.880 43 H 0.144 0.856 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.548 2.120 27.536 27.623 hybrid contribution -0.307 -0.326 -0.204 0.493 sum 0.240 1.794 27.332 27.392 Atomic orbital electron populations 1.22286 0.98752 1.00052 0.99858 1.18994 0.90639 0.94027 0.81710 0.93262 1.20990 1.45550 0.95967 0.94378 0.90343 1.24925 0.93433 0.98662 0.95377 1.69877 1.42771 1.36566 1.03266 0.86897 0.80064 0.85514 0.77424 1.19856 1.21165 1.18259 1.45927 1.68474 1.13659 1.08491 1.16230 0.78466 0.85570 0.80472 1.90880 1.57071 1.14420 1.84208 1.42814 1.70086 1.11388 1.10008 1.17459 0.99203 0.92894 0.85124 1.21122 0.96380 0.93580 0.98966 1.20316 1.04501 1.00874 0.88918 1.18921 0.98712 0.90889 0.86192 1.86187 1.79963 1.43453 1.12022 1.23801 0.97897 0.95123 0.83784 0.89173 1.23082 1.00476 1.00910 0.94573 1.23453 0.88114 0.97514 0.94180 1.89189 1.29072 1.56774 1.53566 1.24017 0.94719 0.92882 0.93715 1.20895 1.07147 0.94214 0.98727 1.20613 1.01999 1.00589 0.90475 0.93677 0.95149 0.92570 0.92204 0.77580 0.76191 0.83724 0.85063 0.88779 0.89082 0.88553 0.91907 0.90984 0.88011 0.85582 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.23 37.15 0.34 -2.94 16 2 C 0.25 5.85 2.13 -69.09 -0.15 5.70 16 3 H 0.05 1.27 5.08 -51.93 -0.26 1.00 16 4 C -0.53 -14.04 9.05 -34.44 -0.31 -14.35 16 5 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 6 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 7 N -0.89 -25.91 13.96 55.43 0.77 -25.14 16 8 Si 0.87 21.35 26.43 -169.99 -4.49 16.86 16 9 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.26 -6.17 6.41 56.52 0.36 -5.81 16 12 N -0.71 -14.05 5.07 -59.82 -0.30 -14.35 16 13 C 0.69 13.29 8.27 -86.93 -0.72 12.57 16 14 O -0.59 -13.37 13.75 5.28 0.07 -13.30 16 15 N -0.69 -10.15 5.35 -14.19 -0.08 -10.22 16 16 C 0.15 2.14 6.26 -83.61 -0.52 1.62 16 17 C -0.08 -1.24 8.65 -39.41 -0.34 -1.58 16 18 C -0.13 -1.74 9.98 -39.46 -0.39 -2.13 16 19 C 0.10 1.20 6.66 -39.23 -0.26 0.94 16 20 O -0.30 -3.48 9.78 -19.67 -0.19 -3.67 16 21 C 0.05 0.42 2.94 -25.16 -0.07 0.34 16 22 H 0.09 0.60 6.25 -51.93 -0.32 0.28 16 23 C -0.15 -0.98 6.90 -25.16 -0.17 -1.15 16 24 C 0.04 0.28 7.63 37.93 0.29 0.57 16 25 O -0.37 -3.59 11.65 -35.23 -0.41 -4.00 16 26 C 0.02 0.19 6.99 37.93 0.26 0.45 16 27 C -0.19 -2.03 8.87 -39.45 -0.35 -2.38 16 28 C -0.12 -1.32 9.96 -39.41 -0.39 -1.71 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.24 7.28 -51.93 -0.38 0.86 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 33 H 0.39 6.64 8.61 -40.82 -0.35 6.29 16 34 H 0.40 4.46 8.84 -40.82 -0.36 4.10 16 35 H 0.15 2.55 6.48 -52.49 -0.34 2.21 16 36 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.09 0.68 8.00 -51.93 -0.42 0.26 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.89 8.09 -51.93 -0.42 0.47 16 43 H 0.13 0.98 5.84 -52.49 -0.31 0.68 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -33.21 361.41 -8.21 -41.42 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.14 Total: 8.87 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -2.89 Total: -1.91 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.39 Total: -49.71 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.53 Total: -20.97 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.49 Total: 16.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.21 -8.21 -41.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160708902.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.424 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds