Wall clock time and date at job start Tue Mar 31 2020 13:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47370 * 2 1 4 4 C 1.50698 * 109.46639 * 240.00198 * 2 1 3 5 5 H 1.08004 * 120.00218 * 245.58450 * 4 2 1 6 6 C 1.37875 * 120.00194 * 65.58660 * 4 2 1 7 7 N 1.31513 * 119.99942 * 6.24130 * 6 4 2 8 8 Si 1.86803 * 120.00341 * 186.23554 * 6 4 2 9 9 H 1.48508 * 109.46845 * 94.99322 * 8 6 4 10 10 H 1.48491 * 109.47343 * 214.99231 * 8 6 4 11 11 H 1.48499 * 109.47177 * 335.00009 * 8 6 4 12 12 N 1.46500 * 109.46768 * 120.00835 * 2 1 3 13 13 C 1.34779 * 119.99536 * 274.99023 * 12 2 1 14 14 O 1.21588 * 120.00116 * 0.02562 * 13 12 2 15 15 N 1.34778 * 119.99720 * 179.97438 * 13 12 2 16 16 C 1.40148 * 119.99844 * 174.96815 * 15 13 12 17 17 C 1.38834 * 120.01669 * 325.49622 * 16 15 13 18 18 C 1.38094 * 119.98258 * 179.97438 * 17 16 15 19 19 C 1.38714 * 120.01706 * 359.97438 * 18 17 16 20 20 O 1.35983 * 119.98526 * 180.02562 * 19 18 17 21 21 C 1.42905 * 116.99875 * 5.51343 * 20 19 18 22 22 H 1.08992 * 110.90675 * 33.38526 * 21 20 19 23 23 C 1.55307 * 110.84418 * 156.96340 * 21 20 19 24 24 C 1.54943 * 100.94014 * 152.32065 * 23 21 20 25 25 O 1.43648 * 105.13950 * 323.55928 * 24 23 21 26 26 C 1.43239 * 109.96818 * 24.42334 * 25 24 23 27 27 C 1.38715 * 120.03141 * 0.27748 * 19 18 17 28 28 C 1.38102 * 120.00805 * 359.48810 * 27 19 18 29 29 H 1.08999 * 109.46558 * 304.75309 * 1 2 3 30 30 H 1.09004 * 109.46572 * 64.74415 * 1 2 3 31 31 H 1.08995 * 109.47590 * 184.74815 * 1 2 3 32 32 H 0.97000 * 120.00174 * 180.02562 * 7 6 4 33 33 H 0.97001 * 120.00483 * 94.99804 * 12 2 1 34 34 H 0.97005 * 120.00015 * 354.98040 * 15 13 12 35 35 H 1.07991 * 120.00698 * 359.94722 * 17 16 15 36 36 H 1.08007 * 119.98926 * 180.02562 * 18 17 16 37 37 H 1.09007 * 111.12525 * 34.40693 * 23 21 20 38 38 H 1.09001 * 111.12691 * 270.24136 * 23 21 20 39 39 H 1.08998 * 110.31398 * 204.63554 * 24 23 21 40 40 H 1.09010 * 110.38919 * 82.51313 * 24 23 21 41 41 H 1.09003 * 109.82750 * 117.80528 * 26 25 24 42 42 H 1.08997 * 109.82913 * 238.77688 * 26 25 24 43 43 H 1.07993 * 119.99617 * 179.74658 * 27 19 18 44 44 H 1.07998 * 120.00492 * 180.27798 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5768 -1.6381 -1.1341 6 6 1.7967 -0.1760 -2.4795 7 7 1.2433 1.0117 -2.5928 8 14 2.2638 -1.1387 -4.0107 9 1 1.0822 -1.8933 -4.5004 10 1 2.7230 -0.1994 -5.0651 11 1 3.3571 -2.0889 -3.6836 12 7 2.0183 -0.6908 1.1961 13 6 2.1472 -0.0185 2.3571 14 8 1.8577 1.1612 2.4118 15 7 2.5958 -0.6541 3.4576 16 6 2.8302 0.0667 4.6365 17 6 3.3033 1.3703 4.5711 18 6 3.5335 2.0801 5.7331 19 6 3.2916 1.4910 6.9654 20 8 3.5180 2.1907 8.1093 21 6 3.8879 3.5637 7.9674 22 1 3.4015 4.0100 7.1001 23 6 3.5566 4.3615 9.2581 24 6 4.6187 5.4874 9.1887 25 8 5.7920 4.8633 8.6433 26 6 5.4216 3.7128 7.8747 27 6 2.8239 0.1868 7.0317 28 6 2.5887 -0.5224 5.8703 29 1 -0.3632 0.5858 0.8444 30 1 -0.3632 0.4385 -0.9295 31 1 -0.3634 -1.0241 0.0851 32 1 1.0773 1.3875 -3.4715 33 1 2.2490 -1.6320 1.1525 34 1 2.7567 -1.6104 3.4337 35 1 3.4916 1.8290 3.6117 36 1 3.9011 3.0944 5.6823 37 1 3.6946 3.7456 10.1469 38 1 2.5471 4.7707 9.2189 39 1 4.8252 5.8749 10.1863 40 1 4.2787 6.2904 8.5345 41 1 5.7174 3.8520 6.8348 42 1 5.9048 2.8248 8.2820 43 1 2.6397 -0.2726 7.9915 44 1 2.2203 -1.5363 5.9218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160709176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:25 Heat of formation + Delta-G solvation = -80.732280 kcal Electronic energy + Delta-G solvation = -26117.681731 eV Core-core repulsion = 22228.690712 eV Total energy + Delta-G solvation = -3888.991018 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76932 -39.94290 -38.82622 -37.22690 -34.95609 -33.96052 -32.41237 -31.90857 -31.02762 -29.54999 -29.15379 -27.74986 -25.25238 -23.50627 -23.33431 -22.63557 -21.43316 -20.92849 -19.84800 -18.60402 -18.23967 -17.46808 -17.02917 -16.47822 -16.00283 -15.56069 -15.26424 -15.06129 -14.58365 -14.54218 -14.40937 -14.08337 -13.71893 -13.55112 -13.30880 -13.12785 -12.81042 -12.61951 -12.40161 -12.30110 -11.96950 -11.85314 -11.47540 -11.20714 -11.08014 -11.00784 -10.81333 -10.77764 -10.39549 -10.29918 -9.95875 -9.70518 -9.45082 -9.11027 -8.96544 -8.57177 -8.05189 -7.52937 -6.17064 -4.24010 1.32045 1.45071 2.81625 3.18533 3.22482 3.30283 3.32837 3.50729 3.59780 3.92479 4.02689 4.30501 4.40692 4.46450 4.63790 4.77908 4.82496 4.88251 4.97137 5.14278 5.17111 5.24348 5.27703 5.31332 5.41890 5.47000 5.57651 5.60093 5.95320 6.01355 6.39314 6.41471 6.50696 6.53919 6.72938 6.88835 6.99299 7.06127 7.17669 7.34315 7.40653 7.59576 7.76820 7.92073 8.05871 8.71463 8.82242 9.21368 9.43674 10.91143 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023871 B = 0.002226 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.669019 B =12575.560486 C =13141.540068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.279 3.721 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.719 5.719 13 C 0.692 3.308 14 O -0.583 6.583 15 N -0.696 5.696 16 C 0.151 3.849 17 C -0.079 4.079 18 C -0.185 4.185 19 C 0.094 3.906 20 O -0.301 6.301 21 C 0.051 3.949 22 H 0.094 0.906 23 C -0.151 4.151 24 C 0.051 3.949 25 O -0.378 6.378 26 C 0.030 3.970 27 C -0.129 4.129 28 C -0.117 4.117 29 H 0.019 0.981 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.402 0.598 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.131 0.869 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 1.356 22.346 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.177 3.823 3 H 0.073 0.927 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.370 5.370 13 C 0.393 3.607 14 O -0.461 6.461 15 N -0.345 5.345 16 C 0.055 3.945 17 C -0.100 4.100 18 C -0.204 4.204 19 C 0.049 3.951 20 O -0.216 6.216 21 C -0.006 4.006 22 H 0.112 0.888 23 C -0.189 4.189 24 C -0.025 4.025 25 O -0.297 6.297 26 C -0.047 4.047 27 C -0.148 4.148 28 C -0.138 4.138 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.237 0.763 35 H 0.160 0.840 36 H 0.145 0.855 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.149 0.851 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.666 2.591 22.316 22.945 hybrid contribution 0.095 -1.371 -1.221 1.838 sum 4.760 1.220 21.095 21.660 Atomic orbital electron populations 1.22047 0.98884 0.98468 1.00812 1.18694 0.90477 0.94233 0.78918 0.92677 1.21181 1.37151 1.08640 0.90373 0.92055 1.24893 0.94971 0.94722 0.99064 1.69969 1.42549 1.15132 1.24216 0.86451 0.78663 0.79696 0.82389 1.20548 1.21087 1.19834 1.45861 1.68642 1.13398 1.09085 1.16173 0.78572 0.85576 0.80426 1.90889 1.56688 1.14374 1.84125 1.42848 1.70483 1.11360 1.09814 1.17466 0.98954 0.92892 0.85181 1.21081 0.96186 0.93655 0.99050 1.21122 1.06851 1.00884 0.91571 1.18894 0.99096 0.92267 0.84800 1.86103 1.83891 1.22236 1.29334 1.23960 0.95125 0.81576 0.99981 0.88822 1.23329 1.00828 0.96888 0.97838 1.23369 0.84621 0.94873 0.99656 1.88451 1.30051 1.42230 1.69009 1.23688 0.94375 0.89865 0.96803 1.20080 1.03933 0.92120 0.98660 1.20677 1.02047 1.00778 0.90278 0.96158 0.90526 0.95380 0.92528 0.78168 0.76316 0.84039 0.85515 0.88921 0.88822 0.88975 0.91547 0.90435 0.89883 0.85130 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.37 37.16 0.35 -3.14 16 2 C 0.28 6.98 2.43 -69.08 -0.17 6.81 16 3 H 0.06 1.61 7.54 -51.93 -0.39 1.22 16 4 C -0.53 -13.94 8.67 -34.44 -0.30 -14.24 16 5 H 0.06 1.52 7.73 -52.48 -0.41 1.12 16 6 C 0.07 1.79 5.22 -17.82 -0.09 1.70 16 7 N -0.88 -24.80 12.01 55.43 0.67 -24.14 16 8 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.72 -14.61 5.07 -59.81 -0.30 -14.91 16 13 C 0.69 13.77 8.26 -86.91 -0.72 13.05 16 14 O -0.58 -13.87 13.77 5.29 0.07 -13.80 16 15 N -0.70 -10.43 5.35 -14.19 -0.08 -10.51 16 16 C 0.15 2.22 6.26 -83.61 -0.52 1.69 16 17 C -0.08 -1.23 8.65 -39.41 -0.34 -1.57 16 18 C -0.19 -2.43 8.90 -39.46 -0.35 -2.78 16 19 C 0.09 1.16 6.67 -39.23 -0.26 0.90 16 20 O -0.30 -3.38 9.88 -19.69 -0.19 -3.58 16 21 C 0.05 0.47 2.77 -24.79 -0.07 0.40 16 22 H 0.09 0.84 6.29 -51.93 -0.33 0.51 16 23 C -0.15 -1.07 6.89 -24.48 -0.17 -1.24 16 24 C 0.05 0.36 7.78 38.18 0.30 0.66 16 25 O -0.38 -3.86 11.36 -35.23 -0.40 -4.26 16 26 C 0.03 0.28 7.36 37.88 0.28 0.56 16 27 C -0.13 -1.48 9.98 -39.46 -0.39 -1.88 16 28 C -0.12 -1.38 9.96 -39.41 -0.39 -1.78 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 2.01 6.68 -51.93 -0.35 1.67 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.39 6.63 8.54 -40.82 -0.35 6.28 16 34 H 0.40 4.55 8.84 -40.82 -0.36 4.19 16 35 H 0.14 2.54 6.49 -52.49 -0.34 2.20 16 36 H 0.13 1.43 5.62 -52.48 -0.30 1.14 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 41 H 0.08 0.70 7.81 -51.93 -0.41 0.29 16 42 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 43 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -32.07 364.34 -8.78 -40.85 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.16 Total: 10.33 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -2.85 Total: -0.85 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.29 Total: -49.56 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.52 Total: -21.63 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.07 -8.78 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160709176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.887 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds