Wall clock time and date at job start Tue Mar 31 2020 13:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47370 * 2 1 4 4 C 1.50698 * 109.46639 * 240.00198 * 2 1 3 5 5 H 1.08004 * 120.00218 * 245.58450 * 4 2 1 6 6 C 1.37875 * 120.00194 * 65.58660 * 4 2 1 7 7 N 1.31513 * 119.99942 * 6.24130 * 6 4 2 8 8 Si 1.86803 * 120.00341 * 186.23554 * 6 4 2 9 9 H 1.48508 * 109.46845 * 94.99322 * 8 6 4 10 10 H 1.48491 * 109.47343 * 214.99231 * 8 6 4 11 11 H 1.48499 * 109.47177 * 335.00009 * 8 6 4 12 12 N 1.46500 * 109.46768 * 120.00835 * 2 1 3 13 13 C 1.34779 * 119.99536 * 274.99023 * 12 2 1 14 14 O 1.21588 * 120.00116 * 0.02562 * 13 12 2 15 15 N 1.34778 * 119.99720 * 179.97438 * 13 12 2 16 16 C 1.40148 * 119.99844 * 174.96815 * 15 13 12 17 17 C 1.38834 * 120.01669 * 325.49622 * 16 15 13 18 18 C 1.38094 * 119.98258 * 179.97438 * 17 16 15 19 19 C 1.38714 * 120.01706 * 359.97438 * 18 17 16 20 20 O 1.35983 * 119.98526 * 180.02562 * 19 18 17 21 21 C 1.42905 * 116.99875 * 5.51343 * 20 19 18 22 22 H 1.08992 * 110.90675 * 33.38526 * 21 20 19 23 23 C 1.55307 * 110.84418 * 156.96340 * 21 20 19 24 24 C 1.54943 * 100.94014 * 152.32065 * 23 21 20 25 25 O 1.43648 * 105.13950 * 323.55928 * 24 23 21 26 26 C 1.43239 * 109.96818 * 24.42334 * 25 24 23 27 27 C 1.38715 * 120.03141 * 0.27748 * 19 18 17 28 28 C 1.38102 * 120.00805 * 359.48810 * 27 19 18 29 29 H 1.08999 * 109.46558 * 304.75309 * 1 2 3 30 30 H 1.09004 * 109.46572 * 64.74415 * 1 2 3 31 31 H 1.08995 * 109.47590 * 184.74815 * 1 2 3 32 32 H 0.97000 * 120.00174 * 180.02562 * 7 6 4 33 33 H 0.97001 * 120.00483 * 94.99804 * 12 2 1 34 34 H 0.97005 * 120.00015 * 354.98040 * 15 13 12 35 35 H 1.07991 * 120.00698 * 359.94722 * 17 16 15 36 36 H 1.08007 * 119.98926 * 180.02562 * 18 17 16 37 37 H 1.09007 * 111.12525 * 34.40693 * 23 21 20 38 38 H 1.09001 * 111.12691 * 270.24136 * 23 21 20 39 39 H 1.08998 * 110.31398 * 204.63554 * 24 23 21 40 40 H 1.09010 * 110.38919 * 82.51313 * 24 23 21 41 41 H 1.09003 * 109.82750 * 117.80528 * 26 25 24 42 42 H 1.08997 * 109.82913 * 238.77688 * 26 25 24 43 43 H 1.07993 * 119.99617 * 179.74658 * 27 19 18 44 44 H 1.07998 * 120.00492 * 180.27798 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5768 -1.6381 -1.1341 6 6 1.7967 -0.1760 -2.4795 7 7 1.2433 1.0117 -2.5928 8 14 2.2638 -1.1387 -4.0107 9 1 1.0822 -1.8933 -4.5004 10 1 2.7230 -0.1994 -5.0651 11 1 3.3571 -2.0889 -3.6836 12 7 2.0183 -0.6908 1.1961 13 6 2.1472 -0.0185 2.3571 14 8 1.8577 1.1612 2.4118 15 7 2.5958 -0.6541 3.4576 16 6 2.8302 0.0667 4.6365 17 6 3.3033 1.3703 4.5711 18 6 3.5335 2.0801 5.7331 19 6 3.2916 1.4910 6.9654 20 8 3.5180 2.1907 8.1093 21 6 3.8879 3.5637 7.9674 22 1 3.4015 4.0100 7.1001 23 6 3.5566 4.3615 9.2581 24 6 4.6187 5.4874 9.1887 25 8 5.7920 4.8633 8.6433 26 6 5.4216 3.7128 7.8747 27 6 2.8239 0.1868 7.0317 28 6 2.5887 -0.5224 5.8703 29 1 -0.3632 0.5858 0.8444 30 1 -0.3632 0.4385 -0.9295 31 1 -0.3634 -1.0241 0.0851 32 1 1.0773 1.3875 -3.4715 33 1 2.2490 -1.6320 1.1525 34 1 2.7567 -1.6104 3.4337 35 1 3.4916 1.8290 3.6117 36 1 3.9011 3.0944 5.6823 37 1 3.6946 3.7456 10.1469 38 1 2.5471 4.7707 9.2189 39 1 4.8252 5.8749 10.1863 40 1 4.2787 6.2904 8.5345 41 1 5.7174 3.8520 6.8348 42 1 5.9048 2.8248 8.2820 43 1 2.6397 -0.2726 7.9915 44 1 2.2203 -1.5363 5.9218 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160709176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:24 Heat of formation + Delta-G solvation = -103.028556 kcal Electronic energy + Delta-G solvation = -26118.648570 eV Core-core repulsion = 22228.690712 eV Total energy + Delta-G solvation = -3889.957858 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.78279 -41.14387 -39.82044 -38.31427 -36.72059 -35.35216 -34.26757 -32.70233 -31.99687 -31.10238 -30.02391 -29.00247 -27.30174 -24.48075 -24.42815 -23.51395 -22.71321 -21.98670 -21.51964 -19.82798 -19.48068 -18.70449 -17.84553 -17.73717 -17.41154 -16.86402 -16.54340 -16.14156 -15.88745 -15.82391 -15.42432 -15.34912 -15.05983 -14.52127 -14.39881 -14.28170 -14.14023 -13.96334 -13.63259 -13.45292 -13.21308 -12.99143 -12.91481 -12.69845 -12.59552 -12.35848 -12.27927 -12.13062 -11.95463 -11.68190 -11.19386 -11.13068 -10.81558 -10.63513 -10.59928 -9.99861 -9.80415 -8.66203 -8.19923 -6.34648 0.31231 0.37906 1.45476 1.45863 1.56674 1.78176 2.02772 2.18219 2.42286 2.81338 2.87122 3.12888 3.27621 3.45712 3.71802 3.73367 3.87463 3.93935 4.06519 4.21967 4.24502 4.38553 4.54388 4.57747 4.63695 4.72211 4.76894 4.84168 4.88545 4.90424 4.99456 5.05643 5.08732 5.29123 5.34046 5.41983 5.49035 5.59652 5.62103 5.82548 5.85304 5.89592 6.02723 6.28475 6.38156 6.74467 7.25544 7.33967 7.69620 8.89100 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023871 B = 0.002226 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.669019 B =12575.560486 C =13141.540068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.287 3.713 3 H 0.002 0.998 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.972 3.028 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.261 1.261 12 N -0.714 5.714 13 C 0.692 3.308 14 O -0.627 6.627 15 N -0.675 5.675 16 C 0.123 3.877 17 C -0.104 4.104 18 C -0.189 4.189 19 C 0.098 3.902 20 O -0.302 6.302 21 C 0.044 3.956 22 H 0.094 0.906 23 C -0.144 4.144 24 C 0.046 3.954 25 O -0.400 6.400 26 C 0.031 3.969 27 C -0.125 4.125 28 C -0.099 4.099 29 H 0.013 0.987 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.422 0.578 35 H 0.106 0.894 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.161 0.839 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 -0.661 24.187 24.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.183 3.817 3 H 0.020 0.980 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.185 1.185 12 N -0.367 5.367 13 C 0.392 3.608 14 O -0.508 6.508 15 N -0.325 5.325 16 C 0.028 3.972 17 C -0.125 4.125 18 C -0.209 4.209 19 C 0.052 3.948 20 O -0.216 6.216 21 C -0.013 4.013 22 H 0.112 0.888 23 C -0.181 4.181 24 C -0.030 4.030 25 O -0.319 6.319 26 C -0.046 4.046 27 C -0.144 4.144 28 C -0.120 4.120 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.260 0.740 35 H 0.124 0.876 36 H 0.153 0.847 37 H 0.114 0.886 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.178 0.822 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.796 0.514 24.218 24.694 hybrid contribution 0.108 -0.650 -1.620 1.748 sum 4.904 -0.135 22.599 23.125 Atomic orbital electron populations 1.21865 0.98468 0.99255 0.99229 1.18259 0.90737 0.91991 0.80725 0.97973 1.21519 1.37017 1.08997 0.90740 0.90647 1.25816 0.94891 0.95494 1.02427 1.70122 1.43870 1.16886 1.24918 0.85330 0.78733 0.78202 0.78051 1.19766 1.21436 1.18532 1.45432 1.68961 1.14064 1.08209 1.16274 0.78323 0.85009 0.81199 1.90865 1.58462 1.16548 1.84958 1.42453 1.69286 1.12174 1.08579 1.17701 1.00691 0.92924 0.85858 1.20934 0.98361 0.94808 0.98397 1.21164 1.06991 1.01316 0.91385 1.19062 0.98241 0.92816 0.84660 1.86111 1.83646 1.23170 1.28654 1.24139 0.94985 0.80826 1.01371 0.88838 1.23352 1.01720 0.96447 0.96586 1.23598 0.83681 0.94910 1.00770 1.88425 1.31783 1.42487 1.69254 1.23641 0.94573 0.89740 0.96680 1.20483 1.02534 0.91603 0.99800 1.20975 1.00233 1.01989 0.88777 0.96771 0.92876 0.93323 0.92562 0.76069 0.73958 0.87570 0.84661 0.88634 0.87187 0.87124 0.90624 0.90659 0.90297 0.82186 0.81721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 9.37 71.98 0.67 -5.76 16 2 C 0.29 14.77 2.43 44.25 0.11 14.88 16 3 H 0.00 0.14 7.54 -2.39 -0.02 0.13 16 4 C -0.54 -28.43 8.67 25.60 0.22 -28.21 16 5 H 0.08 3.64 7.73 -2.91 -0.02 3.62 16 6 C 0.01 0.74 5.22 84.65 0.44 1.18 16 7 N -0.92 -53.17 12.01 21.45 0.26 -52.91 16 8 Si 0.97 41.65 29.54 68.60 2.03 43.67 16 9 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 12 N -0.71 -29.19 5.07 -461.40 -2.34 -31.53 16 13 C 0.69 28.05 8.26 179.05 1.48 29.53 16 14 O -0.63 -31.40 13.77 -3.99 -0.05 -31.46 16 15 N -0.67 -19.75 5.35 -317.06 -1.70 -21.44 16 16 C 0.12 3.53 6.26 38.10 0.24 3.77 16 17 C -0.10 -3.37 8.65 22.38 0.19 -3.18 16 18 C -0.19 -5.01 8.90 22.35 0.20 -4.81 16 19 C 0.10 2.25 6.67 22.50 0.15 2.40 16 20 O -0.30 -6.22 9.88 -93.35 -0.92 -7.15 16 21 C 0.04 0.75 2.77 31.85 0.09 0.84 16 22 H 0.09 1.62 6.29 -2.39 -0.02 1.61 16 23 C -0.14 -1.75 6.89 32.05 0.22 -1.53 16 24 C 0.05 0.57 7.78 72.65 0.56 1.14 16 25 O -0.40 -7.84 11.36 -148.98 -1.69 -9.53 16 26 C 0.03 0.57 7.36 72.45 0.53 1.10 16 27 C -0.13 -2.51 9.98 22.35 0.22 -2.28 16 28 C -0.10 -2.07 9.96 22.38 0.22 -1.85 16 29 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 2.87 6.68 -2.38 -0.02 2.86 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.40 13.42 8.54 -92.71 -0.79 12.63 16 34 H 0.42 8.69 8.84 -92.70 -0.82 7.87 16 35 H 0.11 4.17 6.49 -2.91 -0.02 4.15 16 36 H 0.14 3.18 5.62 -2.91 -0.02 3.16 16 37 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.08 1.38 7.81 -2.39 -0.02 1.36 16 42 H 0.08 1.49 8.05 -2.39 -0.02 1.47 16 43 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 44 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -72.16 364.34 0.57 -71.59 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.57 Total: 31.53 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.56 Total: 7.22 kcal Atomic # 7 Polarization: -102.11 SS G_CDS: -3.78 Total: -105.89 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -2.67 Total: -48.13 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -72.16 0.57 -71.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160709176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.437 kcal (2) G-P(sol) polarization free energy of solvation -72.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds