Wall clock time and date at job start Tue Mar 31 2020 13:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47314 * 2 1 4 4 C 1.50696 * 109.47506 * 239.99525 * 2 1 3 5 5 H 1.08001 * 120.00444 * 239.99737 * 4 2 1 6 6 C 1.37877 * 119.99352 * 60.00223 * 4 2 1 7 7 N 1.31512 * 120.00551 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99771 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47286 * 89.99772 * 8 6 4 10 10 H 1.48497 * 109.47062 * 209.99985 * 8 6 4 11 11 H 1.48504 * 109.46777 * 329.99921 * 8 6 4 12 12 N 1.46504 * 109.47272 * 119.99849 * 2 1 3 13 13 C 1.34781 * 119.99996 * 275.00517 * 12 2 1 14 14 O 1.21598 * 119.99767 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99932 * 179.97438 * 13 12 2 16 16 C 1.40172 * 119.99844 * 174.35049 * 15 13 12 17 17 C 1.38715 * 120.08428 * 336.17212 * 16 15 13 18 18 C 1.38210 * 119.97923 * 180.02562 * 17 16 15 19 19 C 1.38272 * 120.16310 * 359.97438 * 18 17 16 20 20 C 1.38249 * 120.17777 * 0.02929 * 19 18 17 21 21 C 1.38546 * 120.01367 * 359.96974 * 20 19 18 22 22 O 1.35976 * 120.08149 * 180.02562 * 21 20 19 23 23 C 1.42901 * 117.00133 * 353.39067 * 22 21 20 24 24 H 1.09003 * 110.43316 * 333.10126 * 23 22 21 25 25 C 1.54811 * 110.48904 * 210.55743 * 23 22 21 26 26 C 1.55230 * 101.98553 * 220.51742 * 25 23 22 27 27 O 1.44378 * 103.56877 * 36.87601 * 26 25 23 28 28 C 1.43746 * 106.97403 * 320.01391 * 27 26 25 29 29 H 1.09003 * 109.46976 * 60.00098 * 1 2 3 30 30 H 1.09001 * 109.47314 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47377 * 300.00309 * 1 2 3 32 32 H 0.97001 * 120.00311 * 180.02562 * 7 6 4 33 33 H 0.97001 * 120.00342 * 94.99791 * 12 2 1 34 34 H 0.96993 * 120.00048 * 354.34372 * 15 13 12 35 35 H 1.07992 * 120.01252 * 0.02562 * 17 16 15 36 36 H 1.08001 * 119.91236 * 180.27851 * 18 17 16 37 37 H 1.08002 * 119.90636 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99230 * 179.97438 * 20 19 18 39 39 H 1.08999 * 110.90434 * 338.63275 * 25 23 22 40 40 H 1.08998 * 110.91104 * 102.23889 * 25 23 22 41 41 H 1.08998 * 110.51582 * 278.38183 * 26 25 23 42 42 H 1.08994 * 110.77725 * 155.49976 * 26 25 23 43 43 H 1.08997 * 109.87965 * 267.08677 * 28 27 26 44 44 H 1.09009 * 109.87515 * 145.93665 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8581 1.1617 2.4117 15 7 2.5958 -0.6537 3.4578 16 6 2.8423 0.0695 4.6330 17 6 3.1111 1.4288 4.5696 18 6 3.3543 2.1396 5.7296 19 6 3.3301 1.4992 6.9549 20 6 3.0630 0.1446 7.0258 21 6 2.8180 -0.5751 5.8675 22 8 2.5547 -1.9073 5.9357 23 6 2.6886 -2.5305 7.2147 24 1 3.4093 -1.9895 7.8280 25 6 3.1158 -4.0099 7.0545 26 6 2.2531 -4.7134 8.1364 27 8 1.0019 -3.9943 8.0923 28 6 1.3231 -2.6032 7.9251 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.7090 1.1613 -3.4844 33 1 2.2490 -1.6318 1.1527 34 1 2.7481 -1.6113 3.4367 35 1 3.1302 1.9316 3.6140 36 1 3.5591 3.1989 5.6794 37 1 3.5212 2.0585 7.8587 38 1 3.0452 -0.3527 7.9843 39 1 2.8694 -4.3803 6.0595 40 1 4.1789 -4.1324 7.2615 41 1 2.7172 -4.6163 9.1178 42 1 2.1012 -5.7636 7.8871 43 1 1.3856 -2.1176 8.8989 44 1 0.5615 -2.1178 7.3147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162781694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:31 Heat of formation + Delta-G solvation = -75.202731 kcal Electronic energy + Delta-G solvation = -26798.356459 eV Core-core repulsion = 22909.605220 eV Total energy + Delta-G solvation = -3888.751239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.88401 -39.84215 -38.69661 -37.05261 -35.12835 -34.15899 -32.42954 -31.92676 -30.15453 -29.69134 -29.06165 -27.97200 -25.24864 -23.76905 -23.27799 -22.42764 -21.42841 -20.83625 -19.79000 -18.65791 -18.08452 -17.38486 -16.90269 -16.36858 -16.01942 -15.64210 -15.15459 -15.06979 -14.84327 -14.68414 -14.38009 -14.18449 -13.80367 -13.42380 -13.23917 -12.93966 -12.64945 -12.49812 -12.38356 -11.95673 -11.78417 -11.64858 -11.59128 -11.09858 -11.07055 -10.98079 -10.96163 -10.76089 -10.34836 -10.23239 -10.17002 -10.06846 -9.32315 -9.04012 -8.57867 -8.48182 -8.02439 -7.51540 -6.12735 -4.21903 1.42535 1.45259 2.85774 3.20316 3.24533 3.31699 3.34784 3.50113 3.63721 3.99051 4.09966 4.32394 4.39229 4.44851 4.65923 4.79002 4.84255 4.88566 4.95133 5.11665 5.19909 5.24613 5.28574 5.31952 5.45180 5.50436 5.58875 5.68020 5.95287 6.18280 6.31361 6.40203 6.59865 6.74413 6.81054 6.96111 7.00122 7.13608 7.24522 7.40568 7.47265 7.62467 7.84183 8.00280 8.15370 8.72805 8.84702 9.23253 9.46472 10.93325 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015205 B = 0.002944 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.116823 B = 9510.119038 C =10729.849626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.281 3.719 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.718 5.718 13 C 0.693 3.307 14 O -0.582 6.582 15 N -0.685 5.685 16 C 0.164 3.836 17 C -0.101 4.101 18 C -0.129 4.129 19 C -0.115 4.115 20 C -0.189 4.189 21 C 0.079 3.921 22 O -0.302 6.302 23 C 0.052 3.948 24 H 0.092 0.908 25 C -0.154 4.154 26 C 0.047 3.953 27 O -0.371 6.371 28 C 0.028 3.972 29 H 0.091 0.909 30 H 0.026 0.974 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.406 0.594 35 H 0.161 0.839 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.130 -7.149 22.489 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.368 5.368 13 C 0.394 3.606 14 O -0.461 6.461 15 N -0.332 5.332 16 C 0.067 3.933 17 C -0.122 4.122 18 C -0.148 4.148 19 C -0.134 4.134 20 C -0.208 4.208 21 C 0.031 3.969 22 O -0.217 6.217 23 C -0.005 4.005 24 H 0.109 0.891 25 C -0.191 4.191 26 C -0.030 4.030 27 O -0.290 6.290 28 C -0.049 4.049 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.241 0.759 35 H 0.178 0.822 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.475 -6.185 22.078 23.573 hybrid contribution 0.672 -1.235 -0.615 1.535 sum 6.147 -7.421 21.463 23.527 Atomic orbital electron populations 1.22109 0.98531 0.99138 1.00962 1.18689 0.90867 0.93746 0.78807 0.93203 1.21208 1.32526 1.13280 0.90247 0.92063 1.24878 0.94825 0.94947 0.99022 1.69902 1.35838 1.22368 1.23919 0.86432 0.79148 0.79260 0.82155 1.20545 1.21054 1.19866 1.45886 1.68460 1.13436 1.09047 1.16150 0.78542 0.85527 0.80401 1.90819 1.56788 1.14358 1.84099 1.42708 1.69366 1.11461 1.09669 1.16978 1.01705 0.91851 0.82795 1.21567 0.97564 0.91943 1.01095 1.21023 1.01807 1.00100 0.91887 1.20819 1.01067 0.93642 0.97875 1.20902 1.08080 0.95514 0.96351 1.18620 1.02344 0.83160 0.92738 1.86127 1.84543 1.19421 1.31563 1.23847 0.97493 0.94417 0.84726 0.89065 1.23312 1.01126 0.92651 1.02045 1.23594 0.84293 0.97497 0.97588 1.88939 1.27871 1.17723 1.94421 1.23713 0.97157 0.84089 0.99977 0.89082 0.95511 0.96546 0.92536 0.78123 0.75945 0.82217 0.85719 0.86123 0.85659 0.88682 0.89090 0.91852 0.88243 0.91360 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.75 9.26 37.15 0.34 -3.41 16 2 C 0.28 7.17 2.56 -69.09 -0.18 6.99 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.14 8.73 -34.44 -0.30 -14.45 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.84 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.72 -15.17 5.07 -59.81 -0.30 -15.47 16 13 C 0.69 14.37 8.34 -86.91 -0.73 13.64 16 14 O -0.58 -13.97 13.12 5.28 0.07 -13.90 16 15 N -0.69 -11.38 5.30 -14.10 -0.07 -11.46 16 16 C 0.16 2.62 6.46 -83.48 -0.54 2.08 16 17 C -0.10 -1.64 8.73 -39.42 -0.34 -1.98 16 18 C -0.13 -1.68 10.04 -39.58 -0.40 -2.08 16 19 C -0.11 -1.27 10.04 -39.57 -0.40 -1.67 16 20 C -0.19 -2.10 8.96 -39.46 -0.35 -2.46 16 21 C 0.08 1.04 6.69 -39.08 -0.26 0.78 16 22 O -0.30 -3.65 9.16 -19.66 -0.18 -3.83 16 23 C 0.05 0.46 2.92 -25.20 -0.07 0.39 16 24 H 0.09 0.65 5.92 -51.93 -0.31 0.35 16 25 C -0.15 -1.10 6.92 -24.60 -0.17 -1.27 16 26 C 0.05 0.32 7.72 38.34 0.30 0.62 16 27 O -0.37 -3.88 11.52 -35.23 -0.41 -4.29 16 28 C 0.03 0.26 7.50 37.73 0.28 0.54 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.39 7.06 8.56 -40.82 -0.35 6.71 16 34 H 0.41 5.70 8.34 -40.82 -0.34 5.36 16 35 H 0.16 3.00 5.72 -52.49 -0.30 2.70 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.04 5.95 -52.49 -0.31 0.73 16 39 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 1.05 7.97 -51.92 -0.41 0.64 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -31.84 361.75 -8.82 -40.66 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -6.08 Total: 12.04 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.91 Total: -0.57 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: 0.25 Total: -51.14 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.52 Total: -22.02 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.84 -8.82 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162781694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.542 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds