Wall clock time and date at job start Tue Mar 31 2020 13:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47314 * 2 1 4 4 C 1.50696 * 109.47506 * 239.99525 * 2 1 3 5 5 H 1.08001 * 120.00444 * 239.99737 * 4 2 1 6 6 C 1.37877 * 119.99352 * 60.00223 * 4 2 1 7 7 N 1.31512 * 120.00551 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99771 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47286 * 89.99772 * 8 6 4 10 10 H 1.48497 * 109.47062 * 209.99985 * 8 6 4 11 11 H 1.48504 * 109.46777 * 329.99921 * 8 6 4 12 12 N 1.46504 * 109.47272 * 119.99849 * 2 1 3 13 13 C 1.34781 * 119.99996 * 275.00517 * 12 2 1 14 14 O 1.21598 * 119.99767 * 359.97438 * 13 12 2 15 15 N 1.34777 * 119.99932 * 179.97438 * 13 12 2 16 16 C 1.40172 * 119.99844 * 174.35049 * 15 13 12 17 17 C 1.38715 * 120.08428 * 336.17212 * 16 15 13 18 18 C 1.38210 * 119.97923 * 180.02562 * 17 16 15 19 19 C 1.38272 * 120.16310 * 359.97438 * 18 17 16 20 20 C 1.38249 * 120.17777 * 0.02929 * 19 18 17 21 21 C 1.38546 * 120.01367 * 359.96974 * 20 19 18 22 22 O 1.35976 * 120.08149 * 180.02562 * 21 20 19 23 23 C 1.42901 * 117.00133 * 353.39067 * 22 21 20 24 24 H 1.09003 * 110.43316 * 333.10126 * 23 22 21 25 25 C 1.54811 * 110.48904 * 210.55743 * 23 22 21 26 26 C 1.55230 * 101.98553 * 220.51742 * 25 23 22 27 27 O 1.44378 * 103.56877 * 36.87601 * 26 25 23 28 28 C 1.43746 * 106.97403 * 320.01391 * 27 26 25 29 29 H 1.09003 * 109.46976 * 60.00098 * 1 2 3 30 30 H 1.09001 * 109.47314 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47377 * 300.00309 * 1 2 3 32 32 H 0.97001 * 120.00311 * 180.02562 * 7 6 4 33 33 H 0.97001 * 120.00342 * 94.99791 * 12 2 1 34 34 H 0.96993 * 120.00048 * 354.34372 * 15 13 12 35 35 H 1.07992 * 120.01252 * 0.02562 * 17 16 15 36 36 H 1.08001 * 119.91236 * 180.27851 * 18 17 16 37 37 H 1.08002 * 119.90636 * 179.97438 * 19 18 17 38 38 H 1.08002 * 119.99230 * 179.97438 * 20 19 18 39 39 H 1.08999 * 110.90434 * 338.63275 * 25 23 22 40 40 H 1.08998 * 110.91104 * 102.23889 * 25 23 22 41 41 H 1.08998 * 110.51582 * 278.38183 * 26 25 23 42 42 H 1.08994 * 110.77725 * 155.49976 * 26 25 23 43 43 H 1.08997 * 109.87965 * 267.08677 * 28 27 26 44 44 H 1.09009 * 109.87515 * 145.93665 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8581 1.1617 2.4117 15 7 2.5958 -0.6537 3.4578 16 6 2.8423 0.0695 4.6330 17 6 3.1111 1.4288 4.5696 18 6 3.3543 2.1396 5.7296 19 6 3.3301 1.4992 6.9549 20 6 3.0630 0.1446 7.0258 21 6 2.8180 -0.5751 5.8675 22 8 2.5547 -1.9073 5.9357 23 6 2.6886 -2.5305 7.2147 24 1 3.4093 -1.9895 7.8280 25 6 3.1158 -4.0099 7.0545 26 6 2.2531 -4.7134 8.1364 27 8 1.0019 -3.9943 8.0923 28 6 1.3231 -2.6032 7.9251 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.7090 1.1613 -3.4844 33 1 2.2490 -1.6318 1.1527 34 1 2.7481 -1.6113 3.4367 35 1 3.1302 1.9316 3.6140 36 1 3.5591 3.1989 5.6794 37 1 3.5212 2.0585 7.8587 38 1 3.0452 -0.3527 7.9843 39 1 2.8694 -4.3803 6.0595 40 1 4.1789 -4.1324 7.2615 41 1 2.7172 -4.6163 9.1178 42 1 2.1012 -5.7636 7.8871 43 1 1.3856 -2.1176 8.8989 44 1 0.5615 -2.1178 7.3147 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162781694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:30 Heat of formation + Delta-G solvation = -97.392617 kcal Electronic energy + Delta-G solvation = -26799.318684 eV Core-core repulsion = 22909.605220 eV Total energy + Delta-G solvation = -3889.713465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.95123 -41.01014 -39.74806 -38.03397 -36.88888 -35.67546 -34.35152 -32.62708 -31.46725 -30.82788 -30.00316 -29.30528 -27.34783 -24.76729 -24.21273 -23.43590 -22.67870 -21.98645 -21.46268 -19.84813 -19.49179 -18.50991 -17.86289 -17.57310 -17.28358 -16.86332 -16.65736 -16.16378 -15.96489 -15.82659 -15.52042 -15.47284 -15.09240 -14.91383 -14.42100 -14.10961 -13.86480 -13.79681 -13.40146 -13.26929 -12.99930 -12.89606 -12.75027 -12.70157 -12.55649 -12.37273 -12.29619 -12.13334 -11.82526 -11.65721 -11.54671 -11.11181 -10.94499 -10.71173 -10.61866 -9.86583 -9.51103 -8.70271 -8.18317 -6.35854 0.36088 0.43443 1.44860 1.45968 1.56241 1.72562 2.06746 2.15289 2.41779 2.86453 2.93461 3.12144 3.38295 3.41642 3.74497 3.82446 3.98234 4.04140 4.12237 4.26062 4.28190 4.49095 4.56257 4.58237 4.68964 4.72908 4.80173 4.84582 4.89906 4.92568 5.02679 5.07544 5.14130 5.32789 5.38630 5.55100 5.56931 5.62686 5.67599 5.78919 5.83469 5.90330 6.07544 6.23737 6.43809 6.71436 7.18512 7.32706 7.63860 8.88339 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015205 B = 0.002944 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.116823 B = 9510.119038 C =10729.849626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.290 3.710 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.975 3.025 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.264 1.264 12 N -0.715 5.715 13 C 0.692 3.308 14 O -0.620 6.620 15 N -0.670 5.670 16 C 0.124 3.876 17 C -0.127 4.127 18 C -0.137 4.137 19 C -0.098 4.098 20 C -0.182 4.182 21 C 0.086 3.914 22 O -0.316 6.316 23 C 0.045 3.955 24 H 0.117 0.883 25 C -0.151 4.151 26 C 0.044 3.956 27 O -0.401 6.401 28 C 0.026 3.974 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.009 0.991 32 H 0.266 0.734 33 H 0.402 0.598 34 H 0.417 0.583 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.161 0.839 38 H 0.164 0.836 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.587 -8.979 25.122 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.186 3.814 3 H 0.020 0.980 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.188 1.188 12 N -0.367 5.367 13 C 0.393 3.607 14 O -0.502 6.502 15 N -0.318 5.318 16 C 0.028 3.972 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.117 4.117 20 C -0.201 4.201 21 C 0.038 3.962 22 O -0.231 6.231 23 C -0.011 4.011 24 H 0.135 0.865 25 C -0.189 4.189 26 C -0.032 4.032 27 O -0.320 6.320 28 C -0.051 4.051 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.029 0.971 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.254 0.746 35 H 0.140 0.860 36 H 0.158 0.842 37 H 0.179 0.821 38 H 0.181 0.819 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.105 0.895 42 H 0.126 0.874 43 H 0.111 0.889 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.960 -8.068 24.775 26.969 hybrid contribution 0.232 -0.661 -1.246 1.430 sum 7.192 -8.729 23.528 26.106 Atomic orbital electron populations 1.21931 0.98485 0.99371 0.99553 1.18265 0.90826 0.91759 0.80531 0.98006 1.21520 1.32774 1.13659 0.90671 0.90870 1.25802 0.94843 0.95568 1.02287 1.70051 1.36908 1.23833 1.24702 0.85303 0.78942 0.78008 0.77816 1.19628 1.21119 1.18845 1.45497 1.68879 1.13988 1.08318 1.16239 0.78366 0.85052 0.81065 1.90803 1.58326 1.16174 1.84864 1.42364 1.68582 1.11872 1.08940 1.17221 1.04449 0.92146 0.83337 1.21383 0.99876 0.92622 1.00880 1.21245 1.01685 1.00922 0.91719 1.21273 0.98322 0.93834 0.98231 1.21349 1.06177 0.95578 0.96970 1.18647 1.01336 0.83941 0.92247 1.86125 1.84363 1.18789 1.33824 1.24177 0.97904 0.95354 0.83654 0.86501 1.23354 1.02631 0.91433 1.01433 1.23820 0.83055 0.97600 0.98697 1.88906 1.30034 1.18480 1.94606 1.23751 0.96612 0.83834 1.00858 0.91197 0.94248 0.97141 0.92453 0.76338 0.74580 0.86003 0.84173 0.82117 0.81917 0.90222 0.86644 0.89472 0.87388 0.88897 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.40 16 2 C 0.29 15.47 2.56 44.24 0.11 15.58 16 3 H 0.00 0.13 7.58 -2.39 -0.02 0.11 16 4 C -0.55 -29.47 8.73 25.60 0.22 -29.24 16 5 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 6 C 0.02 0.82 5.30 84.65 0.45 1.27 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 8 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 9 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 12 N -0.71 -31.35 5.07 -461.40 -2.34 -33.69 16 13 C 0.69 30.23 8.34 179.05 1.49 31.72 16 14 O -0.62 -31.97 13.12 -4.02 -0.05 -32.02 16 15 N -0.67 -23.04 5.30 -316.78 -1.68 -24.72 16 16 C 0.12 4.04 6.46 38.17 0.25 4.28 16 17 C -0.13 -4.29 8.73 22.38 0.20 -4.09 16 18 C -0.14 -3.43 10.04 22.27 0.22 -3.21 16 19 C -0.10 -1.82 10.04 22.28 0.22 -1.60 16 20 C -0.18 -3.38 8.96 22.35 0.20 -3.18 16 21 C 0.09 2.14 6.69 22.59 0.15 2.29 16 22 O -0.32 -7.13 9.16 -93.28 -0.85 -7.99 16 23 C 0.05 0.66 2.92 31.58 0.09 0.75 16 24 H 0.12 1.10 5.92 -2.39 -0.01 1.09 16 25 C -0.15 -1.75 6.92 31.98 0.22 -1.53 16 26 C 0.04 0.49 7.72 72.75 0.56 1.05 16 27 O -0.40 -7.67 11.52 -148.98 -1.72 -9.39 16 28 C 0.03 0.43 7.50 72.35 0.54 0.97 16 29 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.40 14.90 8.56 -92.71 -0.79 14.10 16 34 H 0.42 11.92 8.34 -92.71 -0.77 11.15 16 35 H 0.12 5.03 5.72 -2.91 -0.02 5.02 16 36 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 38 H 0.16 1.78 5.95 -2.91 -0.02 1.76 16 39 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 40 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.53 7.97 -2.38 -0.02 1.51 16 Total: -1.00 -73.30 361.75 0.71 -72.59 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.52 Total: 35.03 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 5.60 Total: 8.67 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -3.78 Total: -111.21 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -2.62 Total: -49.40 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -73.30 0.71 -72.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162781694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.802 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds